mRNA_11003 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171493
Unique NamemRNA_11003
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Match: A0A836C8N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N2_9STRA)

HSP 1 Score: 655 bits (1690), Expect = 4.780e-238
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 1
Query:    1 MAGGTKLGRHKQLRKLDNLAAATTLRAVPAKTPGPCIFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKPIASDAQDKDKDALPSECAVCLMPLAAAEHTVTRACGHRYYATCLQRWQESSIGATCTACRTELHGVGAAA 954
            MAGGTKLGRHKQLRKLDNLAAATTLRAVPAKTPGPCIFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKPIASDAQDKDKDALPSECAVCLMPLAAAEHTVTRACGHRYYATCLQRWQESSIGATCTACRTELHGVGAAA
Sbjct:    1 MAGGTKLGRHKQLRKLDNLAAATTLRAVPAKTPGPCIFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKPIASDAQDKDKDALPSECAVCLMPLAAAEHTVTRACGHRYYATCLQRWQESSIGATCTACRTELHGVGAAA 318          
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Match: A0A836CAN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN6_9STRA)

HSP 1 Score: 361 bits (926), Expect = 5.750e-122
Identity = 181/302 (59.93%), Postives = 224/302 (74.17%), Query Frame = 1
Query:   70 TLRAVPAKTPGPCIFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVP--VDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRS-MPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKPIASDAQDKDKDALPSECAVCLMPLAAAEHTVTRACGHRYYATCLQRWQESSIG----ATCTACRTELHGVGAAA 954
            TL+AVPA   G  IFVK+LSG T TVHGLS SDTV ++ EA+E KEGV    D+Q+L FAG++L+   TL +  I + ST+HM+  L GG S +  LKIPFADVS++ A+Q + F PDAP WRT   GLN+EGYCRN  C ARN+LVI+ +GM+AFTLG++CACP+C + + P TCGFYACTW YEGAKTDG+ M SPW+TA D  Y  VNEHGNMA WSRLVLVAKPIAS A+DKD  A+P++C +CLM LA +E+T  R CGHRY+ATCL RWQ+   G    +TC ACR + HG  A+A
Sbjct:    2 TLQAVPADEHGINIFVKSLSGKTFTVHGLSCSDTVDTIMEAVEDKEGVLNLFDEQRLVFAGQQLETGRTLYEHRIQNDSTLHMMGRLRGGSSSLAPLKIPFADVSKTSAIQHIRFSPDAPSWRTVVTGLNLEGYCRNPRCAARNELVIANVGMDAFTLGARCACPQCSSAILPHTCGFYACTWKYEGAKTDGVFMCSPWYTAGDTAYDLVNEHGNMALWSRLVLVAKPIASGAKDKDGRAVPNDCGLCLMSLAESENTAVRNCGHRYHATCLTRWQQQYSGGSHRSTCPACRAQHHGASASA 303          
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Match: A0A835ZEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG5_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.530e-88
Identity = 161/324 (49.69%), Postives = 198/324 (61.11%), Query Frame = 1
Query:   10 GTKLGRHKQLRKLDNLAAATTLRAVPAKTPGP----CIFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKP---IASDAQDKDKDAL----------PSECAVCLMPLAAAEHTVTRA-CGHRYYATCLQRWQESSIGATCTACRT 927
            G +L R+  L  L +LA A TL+A  A  PGP     I+VKTL G ++ + G+   DTV  L++ I   EG+P DQQ+L FAGK+L+ S T+ D+ +   ST+H+VL L GG   P   + FADVS   A++R SF  DAP WRT   GLNMEGYCR+  CKAR  LVI+ IGM AF LGS+C CP CG+ +TPVTCGF AC W Y+GAK DG L+R  W TA DD Y R  E  NMA+WSRLVLVAKP   + SD      DA+          P ECAV L         VT   CGHRY+A CL  W+E S  A+C+ C T
Sbjct:  121 GERLIRYWPLATLPSLACAMTLQAPAA--PGPQGSRAIYVKTLRGQSLPLSGVLPCDTVDILKDRISDCEGIPADQQRLIFAGKQLEDSRTVDDYSMERDSTLHLVLRLRGGGCGPS-SLQFADVSNDGAIERRSFSQDAPRWRTVRRGLNMEGYCRDARCKARGALVIAPIGMAAFPLGSRCTCPMCGSAITPVTCGFNACAWTYDGAKEDGELVRGAWRTAGDDKYERFRESDNMATWSRLVLVAKPAVKVKSDPGAAVADAVDNKEAAGASEPDECAVGLRGFGGRSGAVTTTRCGHRYHALCLAGWRECSH-ASCSKCPT 440          
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Match: A0A835ZBQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ4_9STRA)

HSP 1 Score: 270 bits (690), Expect = 6.650e-85
Identity = 147/322 (45.65%), Postives = 197/322 (61.18%), Query Frame = 1
Query:   10 GTKLGRHKQLRKLDNLAAATTLRAVPAKTPGPCIFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKPI----------ASDAQDKDKDA---LPSECAVCLMPLAAAEHT---VTRACGHRYYATCLQRWQESSIGATCTACRT 927
            G +L + +QLR L  L+ A TL+AVPA+     +FVKTL+G+   +  +   DT+ +L+E I+  EG+  DQQ++ FAG++L+   ++ D+ I    T+H+VL L GG   P   + FADV+   AM+R S   DAP WRT   G+NMEGYCRN  C+AR  LVI+ +GM AF LGS C CP C + +TPVTCGFYAC W Y+GAK  G L+R  W TA DD Y R  E  NM +WSRLVLVAKP           A+++   DK A    P ECAVCL    + + +    +  CG+RY+A CL  W+E S  A+C+ C T
Sbjct:   76 GKRLTKKRQLRALPGLSCAMTLQAVPAQGVSMKLFVKTLTGACFELDDVLSGDTIDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSIQKEHTLHLVLRLRGGGCGPS-GLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAKEGGELVRGAWRTAGDDKYDRFRESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGRLQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSH-ASCSKCPT 395          
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Match: A0A835YTW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW7_9STRA)

HSP 1 Score: 202 bits (514), Expect = 8.170e-58
Identity = 119/297 (40.07%), Postives = 165/297 (55.56%), Query Frame = 1
Query:  109 IFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIG-----SGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDGMLMRSPWHTASDDLYHRVN------EHGNMASWSRLVLVAK------PIASDAQDKDKDALPSECAVCLMPLAAAEHTVTRA---CGHRYYATCLQRWQESSIGA--TCTACRTEL 933
            ++VKTL+G  I +  +    TV  L++ I   EG+P DQQ+L + GK L+ S T+ D+G+         +V ++L L GG S+   +  FADV+ ++A+ R++F  +AP WR AC GLN+EG C    C+AR ++VI  +GM AFTLG  CACP C     PVTC F AC WM+EG K  G +       A+ D Y R N        G+M  W RLVLVAK      P A+ A      A   +CAVCL PL +   ++  A   CGH Y+  CL+ W+ SS  +  TC +C  +L
Sbjct:  140 VYVKTLTGKVIALAAVVADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPELREPSVQILLRLRGGGSVTSGR--FADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAALASGSS--AQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 432          
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Match: A0A835Z319_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z319_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.520e-53
Identity = 119/311 (38.26%), Postives = 164/311 (52.73%), Query Frame = 1
Query:  109 IFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIG-----SGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDG-MLMRSPWHTASDDLYHRVN------EHGNMASWSRLVLVAK-------PIASDAQ-----DKDKDALPS-------ECAVCLMPLAAAEHTVTRA---CGHRYYATCLQRWQESSIGA--TCTACRTEL 933
            ++VKTL+G T+ +  +    TV  L++  +  + +P DQQ+L + GK L+ S T+ D+G+         T+ + L L GG  +   +  FADV+  +A+  ++F  +AP WR AC GLN+EG C    C+AR K+VI  +GM AFTLG  CACP C     PVTC F+AC WM+EG K  G   +   W  A D  Y R N        G+M  W RLVLVAK       P A  A       +   AL S       +CAVCL PL +   ++  A   CGH Y+  CL+ W+ SS  +  TC +CR  L
Sbjct:  165 VYVKTLTGKTVALAAVVADTTVDKLKQMFQDAQSIPPDQQRLRWRGKMLEDSRTVSDYGMKFCPQLREPTLQLELRLRGGGCVTGGR--FADVADLNAISHMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGKMVIRGVGMGAFTLGDACACPLCRRPFAPVTCAFHACAWMFEGVKAGGGAALGGVWREAGD-AYERFNTGADGESGGSMVEWERLVLVAKYRGRKRIPAADAAAAGGVAGEPAAALASGSGAQVDDCAVCLEPLHSWHVSLQAAVTPCGHVYHEACLKAWRRSSSASNGTCPSCRANL 472          
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Match: A0A835YSA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA3_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.250e-50
Identity = 105/277 (37.91%), Postives = 145/277 (52.35%), Query Frame = 1
Query:  172 VASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGS------TVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDG-MLMRSPWHTASDDLYHRVN------EHGNMASWSRLVLVAK------PIASDAQDKDKDALP-SECAVCLMPLAAAEHTVTRA-CGHRYYATCLQRWQESSIGAT--CTACRTEL 933
            V  +++ I+  EG P +QQ+L ++GK L+ S +L    +  G       T+ ++  L GG S  L    FADV+ ++ + R++F   AP+WR ACEGLN+EG C N  C A  ++VI  IGM AF LG  CACP C A + P+TC F+ C WM+EG K DG   + + W  A D  Y R N        G M  W R +L+AK        A+D +D   +     +CAVCL PL        +  CGH Y+  CL  WQ  S   +  C  CR +L
Sbjct:    6 VHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGS--LSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDS-YERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDASSNGTQLDDCAVCLEPLRTRRAPFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 279          
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Match: A0A225VBF3_9STRA (Ubiquitin family protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBF3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.030e-46
Identity = 96/289 (33.22%), Postives = 149/289 (51.56%), Query Frame = 1
Query:  109 IFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTL--GSQCACPECGADVTPVTCGFYACTWMYEGAKT-DGMLMRSPWHTASDDLYHR--VNEHGNMASWSRLVLVAKPIASDAQDKDKDALPSE-------CAVCLMPLAA-AEHTVTRACGHRYYATCLQRWQESSI----GATCTACR 924
            +FVK ++G T ++  +S +DTV  ++  +E K G+  + Q L++ GK+L+   TL  + + +  T+ +   + GG S P+ +  FADVS    + R++F  DAP+WR  CEGLN+EG CRNR C+A  K+VI+      F L       CP C   V P+TCG + C+W YEG K  D + + S W  A   +Y+R   +E      W+ L++V KPIA     K   +  S        C++C  P  +  +   T  CGH ++  C   W ++        +C  CR
Sbjct:   42 VFVKMITGKTASIECMS-TDTVGYVKSRVEKKYGISTNDQCLTYGGKQLRDHFTLTTYNVNNMKTLLLSTKMLGGFSGPVSRT-FADVSDGSLITRINFSDDAPEWRLCCEGLNIEGRCRNRMCRAYRKMVIATKDFEMFNLIRDDNVRCPMCQHKVKPLTCGLHDCSWRYEGVKNADKLSVCSQWQEAKGYVYYRFAADEKNGTVEWASLLMVVKPIADSVSAKLTSSTTSVHVSTDDVCSICWSPFGSPVKRPTTSLCGHNFHQVCSDEWAKACAYNHTQPSCPICR 328          
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Match: A0A3M6V6M3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6M3_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.260e-46
Identity = 103/311 (33.12%), Postives = 152/311 (48.87%), Query Frame = 1
Query:   55 LAAATTLRAVPAKTPGPCIFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGGR--SMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTL--GSQCACPECGADVTPVTCGFYACTWMYEGAK-TDGMLMRSPWHTASDDLYHRVN--EHGNMASWSRLVLVAKP----------IASDAQDKDKDALPSECAVCLMPLAAAEHTVTRACGHRYYATCLQRW----QESSIGATCTACR 924
            L A   +R          +FV TLSG TIT++ LS +DTV  ++  IE KE +  + Q+L +AGK L     L  + I  G+T+H+ L + GG     P+ +  F DVS +  +    F PDAP+WR   +GLN+EG CRNR C+A   ++I       F L       CP C  +V P+TCGFY C W +EG   ++ + + S W+ AS D+YHR +  E      W+ L+++ KP          +      K  D     C +C  PL++     T  CGH ++  C + W    +      +C  CR
Sbjct:   60 LVATAQVRVKGRHATAMTVFVITLSGKTITINCLS-TDTVNYVKMKIEDKESIAPEVQRLVYAGKLLNDQVMLSSYNIKGGNTLHLSLRIRGGSIGHSPVFRT-FVDVSNNSLITARKFSPDAPEWRLVSKGLNIEGRCRNRECRAYRSMIIDRKEFVPFNLMRDDDIECPICHCEVRPITCGFYGCAWRFEGVTGSENLSICSQWNDASGDMYHRFDPDEVNGSVEWASLLILTKPRQEMIAAQLCLTVPTTFKSSDT----CTICWSPLSSPTKCFTPHCGHTFHRECSKEWAKWCKHRKTQPSCPICR 364          
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Match: A0A485LQL2_9STRA (Aste57867_24224 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQL2_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.240e-46
Identity = 103/292 (35.27%), Postives = 146/292 (50.00%), Query Frame = 1
Query:  109 IFVKTLSGSTITVHGLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGSTVHMVLSLCGG-----RSMPLLKIP-----FADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTL-GSQCACPECGADVTPVTCGFYACTWMYEGAKTDGML-MRSPWHTASDDLYHRVNE-HGNMASWSRLVLVAKPIASDAQDKDKDALPSECAVCLMPLAAAEHTVTRACGHRYYATCLQRW----QESSIGATCTACRTEL 933
            +FVKT+SG TI++H   H  ++  ++  IE KEG PV  Q+L + G  L  S  + D+ I + +T+H +  L GG     +  P  K+P     FADVS +  +  + F  DAP WRT   GLN+EG C N  C A  +LV + +G  +F +  S  +CP C   V P +CGFY C W YEG K    L + S W  A  D+YH       ++  W+ LV+ A+ +            PSECAVC  PL  +       C H  +  CL  W    + +   ATC  CR+ +
Sbjct:  110 VFVKTISGRTISLHVAPHR-SIRHVKVQIEDKEGTPVAMQRLVYRGVELTDSRFVEDYNIPANATLHGLARLAGGSLISSQPKPAPKLPTNGVAFADVSNAAMLDVIHFSSDAPKWRTVNFGLNVEGRCDNSGCVAYFQLVYTPLGFRSFNVVASVASCPMCHEAVVPKSCGFYKCRWRYEGVKVHTDLHLSSGWALAEGDVYHAFKAVDSDLVRWASLVVTAQQLQP----------PSECAVCFEPLGRSPSLAKLGCKHSIHQACLNEWTAMCRSNHKQATCPLCRSTI 390          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171493 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8N2_9STRA4.780e-238100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAN6_9STRA5.750e-12259.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEG5_9STRA1.530e-8849.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBQ4_9STRA6.650e-8545.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTW7_9STRA8.170e-5840.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z319_9STRA1.520e-5338.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSA3_9STRA1.250e-5037.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A225VBF3_9STRA1.030e-4633.22Ubiquitin family protein n=1 Tax=Phytophthora mega... [more]
A0A3M6V6M3_9STRA1.260e-4633.12Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A485LQL2_9STRA4.240e-4635.27Aste57867_24224 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_82contigContig_82:615406..616362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171493|e_gw1.82.99.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02983
Descriptionstructural constituent of ribosome
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1552@1|root,KOG0003@2759|Eukaryota
Evalue2.89e-38
Seed ortholog112098.XP_008615466.1
Hectar predicted targeting categoryother localisation
TranscriptId171815
TrackFilteredModels1
ProteinId171493
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171493gene_11003Tribonema minus UTEX_B_3156 geneContig_82 615406..616362 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11003_1exon_11003_1Tribonema minus UTEX_B_3156 exonContig_82 615406..616362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11003CDS_11003Tribonema minus UTEX_B_3156 CDSContig_82 615406..616362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171493Trimin1|171493|e_gw1.82.99.1Tribonema minus UTEX_B_3156 polypeptideContig_82 615406..616362 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11003 ID=mRNA_11003|Name=jgi.p|Trimin1|171493|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=957bp|location=Sequence derived from alignment at Contig_82:615406..616362- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGTGGAACGAAGCTGGGCCGGCACAAGCAGCTGAGGAAGCTGGA
CAACCTCGCAGCCGCCACGACGCTGCGTGCAGTACCGGCAAAGACACCTG
GGCCTTGCATCTTCGTCAAGACCCTGAGCGGGAGCACGATCACGGTGCAC
GGCCTGTCTCACAGTGACACAGTCGCCTCCCTCGAGGAGGCCATTGAGGG
CAAGGAAGGCGTTCCGGTCGACCAGCAGAAACTCTCATTTGCTGGCAAGA
GGCTGCAGCCGAGCCACACACTCGGCGACTTTGGCATTGGGAGTGGGAGC
ACTGTGCACATGGTGCTTAGCCTCTGCGGAGGGCGCAGCATGCCACTGCT
CAAAATCCCCTTCGCCGACGTGTCCCGAAGCGATGCCATGCAGCGCTTGA
GCTTTGACCCAGACGCCCCCGACTGGCGCACCGCCTGCGAGGGGCTGAAC
ATGGAGGGCTACTGCCGCAACCGCGCCTGCAAGGCACGCAACAAACTCGT
CATCAGCATGATAGGCATGAACGCATTTACGCTGGGATCGCAGTGCGCGT
GCCCCGAGTGCGGTGCAGACGTCACCCCCGTCACCTGCGGCTTCTATGCG
TGCACCTGGATGTACGAGGGCGCCAAGACGGACGGCATGCTCATGCGCAG
CCCCTGGCACACAGCCAGCGATGACCTCTATCATCGAGTCAATGAGCACG
GCAACATGGCCTCGTGGTCGCGGCTCGTGCTCGTCGCCAAGCCCATCGCC
AGCGACGCCCAGGATAAAGACAAGGACGCCTTGCCCAGCGAGTGCGCTGT
GTGCCTCATGCCTCTTGCCGCAGCGGAGCACACCGTCACGAGGGCTTGCG
GGCACAGGTACTATGCCACATGCCTGCAGAGGTGGCAGGAGAGCAGCATC
GGGGCGACGTGCACCGCGTGCCGCACTGAGCTTCACGGGGTGGGCGCCGC
CGCCTAA
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protein sequence of jgi.p|Trimin1|171493

>Trimin1|171493|e_gw1.82.99.1 ID=Trimin1|171493|e_gw1.82.99.1|Name=jgi.p|Trimin1|171493|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=319bp
MAGGTKLGRHKQLRKLDNLAAATTLRAVPAKTPGPCIFVKTLSGSTITVH
GLSHSDTVASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGS
TVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLN
MEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYA
CTWMYEGAKTDGMLMRSPWHTASDDLYHRVNEHGNMASWSRLVLVAKPIA
SDAQDKDKDALPSECAVCLMPLAAAEHTVTRACGHRYYATCLQRWQESSI
GATCTACRTELHGVGAAA*
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mRNA from alignment at Contig_82:615406..616362-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11003 ID=mRNA_11003|Name=jgi.p|Trimin1|171493|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=957bp|location=Sequence derived from alignment at Contig_82:615406..616362- (Tribonema minus UTEX_B_3156 )
ATGGCGGGTGGAACGAAGCTGGGCCGGCACAAGCAGCTGAGGAAGCTGGA CAACCTCGCAGCCGCCACGACGCTGCGTGCAGTACCGGCAAAGACACCTG GGCCTTGCATCTTCGTCAAGACCCTGAGCGGGAGCACGATCACGGTGCAC GGCCTGTCTCACAGTGACACAGTCGCCTCCCTCGAGGAGGCCATTGAGGG CAAGGAAGGCGTTCCGGTCGACCAGCAGAAACTCTCATTTGCTGGCAAGA GGCTGCAGCCGAGCCACACACTCGGCGACTTTGGCATTGGGAGTGGGAGC ACTGTGCACATGGTGCTTAGCCTCTGCGGAGGGCGCAGCATGCCACTGCT CAAAATCCCCTTCGCCGACGTGTCCCGAAGCGATGCCATGCAGCGCTTGA GCTTTGACCCAGACGCCCCCGACTGGCGCACCGCCTGCGAGGGGCTGAAC ATGGAGGGCTACTGCCGCAACCGCGCCTGCAAGGCACGCAACAAACTCGT CATCAGCATGATAGGCATGAACGCATTTACGCTGGGATCGCAGTGCGCGT GCCCCGAGTGCGGTGCAGACGTCACCCCCGTCACCTGCGGCTTCTATGCG TGCACCTGGATGTACGAGGGCGCCAAGACGGACGGCATGCTCATGCGCAG CCCCTGGCACACAGCCAGCGATGACCTCTATCATCGAGTCAATGAGCACG GCAACATGGCCTCGTGGTCGCGGCTCGTGCTCGTCGCCAAGCCCATCGCC AGCGACGCCCAGGATAAAGACAAGGACGCCTTGCCCAGCGAGTGCGCTGT GTGCCTCATGCCTCTTGCCGCAGCGGAGCACACCGTCACGAGGGCTTGCG GGCACAGGTACTATGCCACATGCCTGCAGAGGTGGCAGGAGAGCAGCATC GGGGCGACGTGCACCGCGTGCCGCACTGAGCTTCACGGGGTGGGCGCCGC CGCCTAA
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Coding sequence (CDS) from alignment at Contig_82:615406..616362-

>mRNA_11003 ID=mRNA_11003|Name=jgi.p|Trimin1|171493|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=957bp|location=Sequence derived from alignment at Contig_82:615406..616362- (Tribonema minus UTEX_B_3156 )
ATGGCGGGTGGAACGAAGCTGGGCCGGCACAAGCAGCTGAGGAAGCTGGA
CAACCTCGCAGCCGCCACGACGCTGCGTGCAGTACCGGCAAAGACACCTG
GGCCTTGCATCTTCGTCAAGACCCTGAGCGGGAGCACGATCACGGTGCAC
GGCCTGTCTCACAGTGACACAGTCGCCTCCCTCGAGGAGGCCATTGAGGG
CAAGGAAGGCGTTCCGGTCGACCAGCAGAAACTCTCATTTGCTGGCAAGA
GGCTGCAGCCGAGCCACACACTCGGCGACTTTGGCATTGGGAGTGGGAGC
ACTGTGCACATGGTGCTTAGCCTCTGCGGAGGGCGCAGCATGCCACTGCT
CAAAATCCCCTTCGCCGACGTGTCCCGAAGCGATGCCATGCAGCGCTTGA
GCTTTGACCCAGACGCCCCCGACTGGCGCACCGCCTGCGAGGGGCTGAAC
ATGGAGGGCTACTGCCGCAACCGCGCCTGCAAGGCACGCAACAAACTCGT
CATCAGCATGATAGGCATGAACGCATTTACGCTGGGATCGCAGTGCGCGT
GCCCCGAGTGCGGTGCAGACGTCACCCCCGTCACCTGCGGCTTCTATGCG
TGCACCTGGATGTACGAGGGCGCCAAGACGGACGGCATGCTCATGCGCAG
CCCCTGGCACACAGCCAGCGATGACCTCTATCATCGAGTCAATGAGCACG
GCAACATGGCCTCGTGGTCGCGGCTCGTGCTCGTCGCCAAGCCCATCGCC
AGCGACGCCCAGGATAAAGACAAGGACGCCTTGCCCAGCGAGTGCGCTGT
GTGCCTCATGCCTCTTGCCGCAGCGGAGCACACCGTCACGAGGGCTTGCG
GGCACAGGTACTATGCCACATGCCTGCAGAGGTGGCAGGAGAGCAGCATC
GGGGCGACGTGCACCGCGTGCCGCACTGAGCTTCACGGGGTGGGCGCCGC
CGCCTAA
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