mRNA_10999 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|336265
Unique Name	mRNA_10999
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|336265 vs. uniprot
Match: A0A836C8Y6_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Y6_9STRA)

HSP 1 Score: 557 bits (1435), Expect = 1.470e-196
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 1

Query:    1 MNDGGANFTPSCVSCLQPISEDSGLLLSCQHFICGGCAATASRAQCPACADVPVDAVPLSSLPVEVGMYMQQPPQILQMVGEVWSFQASHYQATIANMRAALGEVTQAVGGLQGQVASLQRGVNSEMELRKRAEAENQALRQQLAQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPQQRPQSAHPQDNFSRPGTAQXXXXXXXXXRSSPPKPRXXXXXPSSGSAGGGGSRGDAFSSGRPGSRGSEMGHPGAAPRTPLGVVRGSNALGSSSPLSLGSPTTRLRSTQLPYARTGSGGAXXXXXXXXXXLARLRSPPSLQRPSTXXXXXXXXXXXXXXXXXXXXXXXXXXGLMSRPGTAASSANGSLGMGAMRGIGAPVSRRPGSSMPSTW 1182
            MNDGGANFTPSCVSCLQPISEDSGLLLSCQHFICGGCAATASRAQCPACADVPVDAVPLSSLPVEVGMYMQQPPQILQMVGEVWSFQASHYQATIANMRAALGEVTQAVGGLQGQVASLQRGVNSEMELRKRAEAENQALRQQLAQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPQQRPQSAHPQDNFSRPGTAQXXXXXXXXXRSSPPKPRXXXXXPSSGSAGGGGSRGDAFSSGRPGSRGSEMGHPGAAPRTPLGVVRGSNALGSSSPLSLGSPTTRLRSTQLPYARTGSGGAXXXXXXXXXXLARLRSPPSLQRPSTXXXXXXXXXXXXXXXXXXXXXXXXXXGLMSRPGTAASSANGSLGMGAMRGIGAPVSRRPGSSMPSTW
Sbjct:    1 MNDGGANFTPSCVSCLQPISEDSGLLLSCQHFICGGCAATASRAQCPACADVPVDAVPLSSLPVEVGMYMQQPPQILQMVGEVWSFQASHYQATIANMRAALGEVTQAVGGLQGQVASLQRGVNSEMELRKRAEAENQALRQQLAQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPQQRPQSAHPQDNFSRPGTAQXXXXXXXXXRSSPPKPRXXXXXPSSGSAGGGGSRGDAFSSGRPGSRGSEMGHPGAAPRTPLGVVRGSNALGSSSPLSLGSPTTRLRSTQLPYARTGSGGAXXXXXXXXXXLARLRSPPSLQRPSTXXXXXXXXXXXXXXXXXXXXXXXXXXGLMSRPGTAASSANGSLGMGAMRGIGAPVSRRPGSSMPSTW 394

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|336265 vs. uniprot

BLAST of jgi.p|Trimin1|336265 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836C8Y6_9STRA	1.470e-196	100.00	RING-type domain-containing protein n=1 Tax=Tribon...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_82	contig	Contig_82:595082..596414 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|336265\|MIX45028_2_13
Description	Ring finger
COG category	O
Max annot lvl	5653\|Kinetoplastida
EggNOG OGs	2DZMR@1\|root,2S74Y@2759\|Eukaryota,3XWM7@5653\|Kinetoplastida
Evalue	2.4e-05
Seed ortholog	5693.XP_817470.1
Hectar predicted targeting category	other localisation
TranscriptId	336587
Track	FilteredModels1
ProteinId	336265

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|336265	gene_10999	Tribonema minus UTEX_B_3156	gene	Contig_82 595082..596414 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10999_1	exon_10999_1	Tribonema minus UTEX_B_3156	exon	Contig_82 595082..595676 +
exon_10999_2	exon_10999_2	Tribonema minus UTEX_B_3156	exon	Contig_82 595803..596414 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10999	CDS_10999	Tribonema minus UTEX_B_3156	CDS	Contig_82 595082..595676 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10999	UTR3_10999	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_82 596393..596414 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|336265	Trimin1\|336265\|MIX45028_2_13	Tribonema minus UTEX_B_3156	polypeptide	Contig_82 595082..596392 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_82:595082..596414+
coding sequence from alignment at Contig_82:595082..596414+

spliced messenger RNA

>mRNA_10999 ID=mRNA_10999|Name=jgi.p|Trimin1|336265|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1207bp|location=Sequence derived from alignment at Contig_82:595082..596414+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGATGGCGGCGCAAATTTCACGCCGTCATGCGTGAGCTGCTTGCA
ACCTATCAGTGAGGACTCCGGCCTCTTGCTGTCGTGCCAGCACTTCATCT
GCGGGGGCTGCGCCGCCACGGCTTCCCGCGCGCAGTGCCCAGCATGCGCC
GACGTGCCCGTTGACGCAGTCCCGTTGTCCAGTCTGCCTGTTGAAGTTGG
CATGTACATGCAGCAACCCCCTCAGATCCTGCAGATGGTGGGGGAAGTGT
GGAGCTTTCAGGCCAGCCACTATCAAGCCACCATCGCCAACATGCGGGCA
GCTCTGGGAGAGGTGACGCAGGCGGTGGGAGGGCTGCAGGGACAGGTGGC
ATCGCTGCAGAGGGGCGTCAACTCCGAGATGGAGCTGCGCAAGAGAGCGG
AGGCGGAGAATCAGGCACTGAGGCAGCAGCTGGCCCAGCTGCAGCAACAG
CAGCAGCGGCAGCAGCACCACTTCAGGCCAGCGACGGCCGCGCAGCTCTA
CCAACAGCAACACGGCGGCCGCCAACACCACCAACAACAGGGACCGCAGC
AGCGGCCGCAGTCGGCCCACCCTCAGGACAATTTCAGCAGACCTGGCACG
GCGCAGCAGCAGCAGCAGCAGCGGCCCGTCTCGCGGTCCAGCCCGCCTAA
GCCGCGCTCCCCTTACACGCGCCCTTCCAGCGGCAGCGCCGGCGGCGGCG
GCAGCCGCGGCGACGCCTTCAGCAGCGGCAGACCCGGTTCTCGCGGGTCG
GAGATGGGCCACCCCGGCGCCGCGCCGCGCACGCCGCTGGGCGTCGTGCG
CGGCTCGAACGCGCTCGGCAGCTCGTCGCCGCTGTCGCTGGGGTCGCCCA
CCACGCGCCTGCGCAGCACGCAGCTGCCGTACGCGCGCACCGGCAGCGGC
GGCGCCGGCGCGTCCGACGGCAGCGGCGGCGGCGGCCTCGCGCGCCTGCG
CAGCCCGCCGTCGCTGCAGCGCCCCTCGACCAGCGCCGGCGGCGGCGGCA
TGCCGCGGCCCGGCTCGCACGGAAGCGGCGGCGGCGGCGGCGGCGGCGGC
AGCGGCGGCGGGTTGATGTCGAGGCCGGGGACAGCGGCGTCATCGGCGAA
CGGATCACTGGGGATGGGGGCGATGCGCGGCATCGGAGCGCCGGTGTCAC
GGCGGCCCGGCAGCAGCATGCCATCTACTTGGTGATGGTTGTGCAGCGGC
GATGCTG

protein sequence of jgi.p|Trimin1|336265

>Trimin1|336265|MIX45028_2_13 ID=Trimin1|336265|MIX45028_2_13|Name=jgi.p|Trimin1|336265|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=395bp
MNDGGANFTPSCVSCLQPISEDSGLLLSCQHFICGGCAATASRAQCPACA
DVPVDAVPLSSLPVEVGMYMQQPPQILQMVGEVWSFQASHYQATIANMRA
ALGEVTQAVGGLQGQVASLQRGVNSEMELRKRAEAENQALRQQLAQLQQQ
QQRQQHHFRPATAAQLYQQQHGGRQHHQQQGPQQRPQSAHPQDNFSRPGT
AQQQQQQRPVSRSSPPKPRSPYTRPSSGSAGGGGSRGDAFSSGRPGSRGS
EMGHPGAAPRTPLGVVRGSNALGSSSPLSLGSPTTRLRSTQLPYARTGSG
GAGASDGSGGGGLARLRSPPSLQRPSTSAGGGGMPRPGSHGSGGGGGGGG
SGGGLMSRPGTAASSANGSLGMGAMRGIGAPVSRRPGSSMPSTW*

mRNA from alignment at Contig_82:595082..596414+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10999 ID=mRNA_10999|Name=jgi.p|Trimin1|336265|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1333bp|location=Sequence derived from alignment at Contig_82:595082..596414+ (Tribonema minus UTEX_B_3156 )
ATGAACGATGGCGGCGCAAATTTCACGCCGTCATGCGTGAGCTGCTTGCA
ACCTATCAGTGAGGACTCCGGCCTCTTGCTGTCGTGCCAGCACTTCATCT
GCGGGGGCTGCGCCGCCACGGCTTCCCGCGCGCAGTGCCCAGCATGCGCC
GACGTGCCCGTTGACGCAGTCCCGTTGTCCAGTCTGCCTGTTGAAGTTGG
CATGTACATGCAGCAACCCCCTCAGATCCTGCAGATGGTGGGGGAAGTGT
GGAGCTTTCAGGCCAGCCACTATCAAGCCACCATCGCCAACATGCGGGCA
GCTCTGGGAGAGGTGACGCAGGCGGTGGGAGGGCTGCAGGGACAGGTGGC
ATCGCTGCAGAGGGGCGTCAACTCCGAGATGGAGCTGCGCAAGAGAGCGG
AGGCGGAGAATCAGGCACTGAGGCAGCAGCTGGCCCAGCTGCAGCAACAG
CAGCAGCGGCAGCAGCACCACTTCAGGCCAGCGACGGCCGCGCAGCTCTA
CCAACAGCAACACGGCGGCCGCCAACACCACCAACAACAGGGACCGCAGC
AGCGGCCGCAGTCGGCCCACCCTCAGGACAATTTCAGCAGACCTGGTACA
CAGCAGCAGCAGCAGCAGCACCAGCAGCGGCAGCAGGAGCAGCACCCCAG
GAACATCATGGGCGAGCTGCAGAGCTATTTTGTGCGCCAGAGCAATGCCG
AGAATCCGCCGCCTCCCCCAGGCACGGCGCAGCAGCAGCAGCAGCAGCGG
CCCGTCTCGCGGTCCAGCCCGCCTAAGCCGCGCTCCCCTTACACGCGCCC
TTCCAGCGGCAGCGCCGGCGGCGGCGGCAGCCGCGGCGACGCCTTCAGCA
GCGGCAGACCCGGTTCTCGCGGGTCGGAGATGGGCCACCCCGGCGCCGCG
CCGCGCACGCCGCTGGGCGTCGTGCGCGGCTCGAACGCGCTCGGCAGCTC
GTCGCCGCTGTCGCTGGGGTCGCCCACCACGCGCCTGCGCAGCACGCAGC
TGCCGTACGCGCGCACCGGCAGCGGCGGCGCCGGCGCGTCCGACGGCAGC
GGCGGCGGCGGCCTCGCGCGCCTGCGCAGCCCGCCGTCGCTGCAGCGCCC
CTCGACCAGCGCCGGCGGCGGCGGCATGCCGCGGCCCGGCTCGCACGGAA
GCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGGTTGATGTCGAGG
CCGGGGACAGCGGCGTCATCGGCGAACGGATCACTGGGGATGGGGGCGAT
GCGCGGCATCGGAGCGCCGGTGTCACGGCGGCCCGGCAGCAGCATGCCAT
CTACTTGGTGATGGTTGTGCAGCGGCGATGCTG

Coding sequence (CDS) from alignment at Contig_82:595082..596414+

>mRNA_10999 ID=mRNA_10999|Name=jgi.p|Trimin1|336265|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1185bp|location=Sequence derived from alignment at Contig_82:595082..596414+ (Tribonema minus UTEX_B_3156 )
ATGAACGATGGCGGCGCAAATTTCACGCCGTCATGCGTGAGCTGCTTGCA
ACCTATCAGTGAGGACTCCGGCCTCTTGCTGTCGTGCCAGCACTTCATCT
GCGGGGGCTGCGCCGCCACGGCTTCCCGCGCGCAGTGCCCAGCATGCGCC
GACGTGCCCGTTGACGCAGTCCCGTTGTCCAGTCTGCCTGTTGAAGTTGG
CATGTACATGCAGCAACCCCCTCAGATCCTGCAGATGGTGGGGGAAGTGT
GGAGCTTTCAGGCCAGCCACTATCAAGCCACCATCGCCAACATGCGGGCA
GCTCTGGGAGAGGTGACGCAGGCGGTGGGAGGGCTGCAGGGACAGGTGGC
ATCGCTGCAGAGGGGCGTCAACTCCGAGATGGAGCTGCGCAAGAGAGCGG
AGGCGGAGAATCAGGCACTGAGGCAGCAGCTGGCCCAGCTGCAGCAACAG
CAGCAGCGGCAGCAGCACCACTTCAGGCCAGCGACGGCCGCGCAGCTCTA
CCAACAGCAACACGGCGGCCGCCAACACCACCAACAACAGGGACCGCAGC
AGCGGCCGCAGTCGGCCCACCCTCAGGACAATTTCAGCAGACCTGGCACG
GCGCAGCAGCAGCAGCAGCAGCGGCCCGTCTCGCGGTCCAGCCCGCCTAA
GCCGCGCTCCCCTTACACGCGCCCTTCCAGCGGCAGCGCCGGCGGCGGCG
GCAGCCGCGGCGACGCCTTCAGCAGCGGCAGACCCGGTTCTCGCGGGTCG
GAGATGGGCCACCCCGGCGCCGCGCCGCGCACGCCGCTGGGCGTCGTGCG
CGGCTCGAACGCGCTCGGCAGCTCGTCGCCGCTGTCGCTGGGGTCGCCCA
CCACGCGCCTGCGCAGCACGCAGCTGCCGTACGCGCGCACCGGCAGCGGC
GGCGCCGGCGCGTCCGACGGCAGCGGCGGCGGCGGCCTCGCGCGCCTGCG
CAGCCCGCCGTCGCTGCAGCGCCCCTCGACCAGCGCCGGCGGCGGCGGCA
TGCCGCGGCCCGGCTCGCACGGAAGCGGCGGCGGCGGCGGCGGCGGCGGC
AGCGGCGGCGGGTTGATGTCGAGGCCGGGGACAGCGGCGTCATCGGCGAA
CGGATCACTGGGGATGGGGGCGATGCGCGGCATCGGAGCGCCGGTGTCAC
GGCGGCCCGGCAGCAGCATGCCATCTACTTGGTGA