mRNA_10904 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350736
Unique Name	mRNA_10904
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350736 vs. uniprot
Match: A0A835YPI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPI9_9STRA)

HSP 1 Score: 526 bits (1356), Expect = 1.740e-187
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1

Query:    1 MAHAHRSLASVCLQVQRKDAELRALQSRCTLLPADTDIGAAMQMEQYWPQAHRPAGVFFAEPTVQQQHELLPEHHLQQNELPPPPRQHVLPLPDQQQYQPPSFESTRQQRKHVSQDNLKQLSDQVVQLQGQRAFLRGQLEHCRELYQCAQQRVQWGQALELRVDARLQGLIQDRIVSETQASVGMQKLRRALQHEHAKNIKELKDQXXXDVQSLQNKIFTMELGHAEAVRQLEAERDKAQSDFALAEAAREKATEASKLVRDNAAAQCEAARRDASAEAHAELLDAAT 864
            MAHAHRSLASVCLQVQRKDAELRALQSRCTLLPADTDIGAAMQMEQYWPQAHRPAGVFFAEPTVQQQHELLPEHHLQQNELPPPPRQHVLPLPDQQQYQPPSFESTRQQRKHVSQDNLKQLSDQVVQLQGQRAFLRGQLEHCRELYQCAQQRVQWGQALELRVDARLQGLIQDRIVSETQASVGMQKLRRALQHEHAKNIKELKDQXXXDVQSLQNKIFTMELGHAEAVRQLEAERDKAQSDFALAEAAREKATEASKLVRDNAAAQCEAARRDASAEAHAELLDAAT
Sbjct:    1 MAHAHRSLASVCLQVQRKDAELRALQSRCTLLPADTDIGAAMQMEQYWPQAHRPAGVFFAEPTVQQQHELLPEHHLQQNELPPPPRQHVLPLPDQQQYQPPSFESTRQQRKHVSQDNLKQLSDQVVQLQGQRAFLRGQLEHCRELYQCAQQRVQWGQALELRVDARLQGLIQDRIVSETQASVGMQKLRRALQHEHAKNIKELKDQXXXDVQSLQNKIFTMELGHAEAVRQLEAERDKAQSDFALAEAAREKATEASKLVRDNAAAQCEAARRDASAEAHAELLDAAT 288

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350736 vs. uniprot

BLAST of jgi.p|Trimin1|350736 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YPI9_9STRA	1.740e-187	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_70	contig	Contig_70:546892..550604 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350736\|estExt_Genemark1.C_Ctg_700062
Hectar predicted targeting category	other localisation
TranscriptId	351058
Track	FilteredModels1
ProteinId	350736

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350736	gene_10904	Tribonema minus UTEX_B_3156	gene	Contig_70 546892..550604 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350736	Trimin1\|350736\|estExt_Genemark1.C_Ctg_700062	Tribonema minus UTEX_B_3156	polypeptide	Contig_70 548001..550604 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10904_5	exon_10904_5	Tribonema minus UTEX_B_3156	exon	Contig_70 546892..546995 -
exon_10904_4	exon_10904_4	Tribonema minus UTEX_B_3156	exon	Contig_70 547989..548192 -
exon_10904_3	exon_10904_3	Tribonema minus UTEX_B_3156	exon	Contig_70 548918..549013 -
exon_10904_2	exon_10904_2	Tribonema minus UTEX_B_3156	exon	Contig_70 549713..549814 -
exon_10904_1	exon_10904_1	Tribonema minus UTEX_B_3156	exon	Contig_70 550128..550604 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10904	UTR3_10904	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_70 547989..548000 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10904	CDS_10904	Tribonema minus UTEX_B_3156	CDS	Contig_70 550128..550604 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_70:546892..550604-
coding sequence from alignment at Contig_70:546892..550604-

spliced messenger RNA

>mRNA_10904 ID=mRNA_10904|Name=jgi.p|Trimin1|350736|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=983bp|location=Sequence derived from alignment at Contig_70:546892..550604- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCACGCGCACCGCTCGCTTGCATCCGTCTGCCTGCAGGTCCAGCG
GAAGGACGCGGAGCTGCGAGCACTGCAGTCGCGCTGCACGCTGCTCCCGG
CAGACACGGACATTGGCGCCGCCATGCAGATGGAGCAGTACTGGCCTCAG
GCGCACCGGCCGGCAGGCGTCTTCTTCGCTGAGCCAACGGTGCAGCAACA
GCATGAGCTTCTTCCTGAGCATCACCTGCAGCAGAACGAGCTTCCACCTC
CGCCGCGCCAGCACGTGCTGCCTCTTCCCGACCAGCAGCAATACCAGCCG
CCTTCGTTCGAGTCGACGCGGCAGCAGCGCAAGCACGTCTCTCAGGACAA
CCTGAAGCAACTGTCGGACCAGGTGGTGCAGCTCCAAGGGCAGCGCGCGT
TCTTGCGAGGGCAACTGGAGCACTGCAGGGAGCTGTACCAGTGCGCGCAG
CAGAGGGTCCAGTGGGGTCAAGCACTGGAGCTGCGCGTAGATGCGCGCCT
CCAGGGCCTTATCCAAGACCGCATTGTCAGCGAGACGCAGGCGAGCGTGG
GGATGCAGAAGCTGCGACGTGCCCTGCAGCACGAGCATGCCAAGAACATT
AAGGAACTGAAGGACCAGCATGCAAAGGACGTGCAGAGCTTGCAGAACAA
GATCTTCACCATGGAGCTGGGTCATGCTGAGGCGGTGCGGCAGCTGGAGG
CGGAGCGCGACAAGGCGCAGTCCGATTTCGCGTTAGCAGAGGCGGCTAGA
GAGAAGGCGACCGAGGCGTCGAAGCTGGTGCGCGACAACGCCGCCGCGCA
GTGCGAGGCGGCAAGGCGCGATGCCTCTGCCGAGGCGCATGCAGAACTTC
TCGACGCAGCAACGTGACTCGAGGCACAGCGGAAGCTACTGCGGGAGCAG
GTAGAGCGTGCGCGTGCTGAGGATCCGCAGCTGCAAAAGGAGCGAAGAGT
CGCGGCGCAGAGGATCGAGCAGCTGGAGCAGGA

protein sequence of jgi.p|Trimin1|350736

>Trimin1|350736|estExt_Genemark1.C_Ctg_700062 ID=Trimin1|350736|estExt_Genemark1.C_Ctg_700062|Name=jgi.p|Trimin1|350736|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=289bp
MAHAHRSLASVCLQVQRKDAELRALQSRCTLLPADTDIGAAMQMEQYWPQ
AHRPAGVFFAEPTVQQQHELLPEHHLQQNELPPPPRQHVLPLPDQQQYQP
PSFESTRQQRKHVSQDNLKQLSDQVVQLQGQRAFLRGQLEHCRELYQCAQ
QRVQWGQALELRVDARLQGLIQDRIVSETQASVGMQKLRRALQHEHAKNI
KELKDQHAKDVQSLQNKIFTMELGHAEAVRQLEAERDKAQSDFALAEAAR
EKATEASKLVRDNAAAQCEAARRDASAEAHAELLDAAT*

mRNA from alignment at Contig_70:546892..550604-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10904 ID=mRNA_10904|Name=jgi.p|Trimin1|350736|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3713bp|location=Sequence derived from alignment at Contig_70:546892..550604- (Tribonema minus UTEX_B_3156 )
ATGGCTCACGCGCACCGCTCGCTTGCATCCGTCTGCCTGCAGGTCCAGCG
GAAGGACGCGGAGCTGCGAGCACTGCAGTCGCGCTGCACGCTGCTCCCGG
CAGACACGGACATTGGCGCCGCCATGCAGATGGAGCAGTACTGGCCTCAG
GCGCACCGGCCGGCAGGCGTCTTCTTCGCTGAGCCAACGGTGCAGCAACA
GCATGAGCTTCTTCCTGAGCATCACCTGCAGCAGAACGAGCTTCCACCTC
CGCCGCGCCAGCACGTGCTGCCTCTTCCCGACCAGCAGCAATACCAGCCG
CCTTCGTTCGAGTCGACGCGGCAGCAGCGCAAGCACGTCTCTCAGGACAA
CCTGAAGCAACTGTCGGACCAGGTGGTGCAGCTCCAAGGGCAGCGCGCGT
TCTTGCGAGGGCAACTGGAGCACTGCAGGGAGCTGTACCAGTGCGCGCAG
CAGAGGGTCCAGTGGGGTCAAGCACTGGTACGTGCCCCACTTTTGGTTGT
GGACTTGAACATCAATATAGTATGTGGCAAGCATGCCTCTGTGCTGCTCT
AAGTAGCCAACGTATAGCAGTGATCTTGTGTAACAGGTGGCGTGCTGTGT
TTCGACGCGACCTGGCCTGTTTGTGTGCACGCGACAGGACAAATGCACTT
GAAGTATTGGAGCAAAAGCTGCCCCATCAAGCGGGCATTTGTGTGCAGGT
CCTTGCGCAGCTGCGTTCAACAATGCTGCACATTCACGGAGCTCCTCATG
TCCTGACACCCCCTCATGCCTGTCGCCCGTTGCATATCAGGAGCTGCGCG
TAGATGCGCGCCTCCAGGGCCTTATCCAAGACCGCATTGTCAGCGAGACG
CAGGCGAGCGTGGGGATGCAGAAGCTGCGACGTGCCCTGCAGGTACTGGC
GGTGACAACTGGCGTGGTAGCATGTCGTTGGTGTGCTGGTGGCTGCTGTA
ACGTGTCGACTTGGTGCAGAAACACAACACTTGTAACCACCCTCACAGCA
AGCGAGCGAGAAGTGAAGCTGACGTACTGTCACTGGATACACGTACGCTG
ACGATTCCACTGCATGGTCATGTGTGTATGTAAGACAAGCAAAGGCAAAC
CATGGATTCACAGCGAAAATGAAATTGTGTGGGCGAATGCACAATGAATG
ATGGTGACCATTGTGCGCCGCAGGCTCACTGAAATCAAGTACTTCAAAGT
ATCGTGCTCAGTTATGCACAGCGTTCCATGGGTGCCACGTTTGCTATTGA
AGTACCAAGAGCAAAGTCTAACCATGCAAGCAGTGTGCACCTGCAGCAGT
TAGTGAGCCTGCTACTGTAAGGGAAATGTGTTTGCAAGGCAATTGTTAGA
TGATGTGAGACGCATGCGTTCGGTGGCATCAGCTCAGTGGCGGCGTTGCA
GTTCGGGTGGTGAACGAAAGCCCTGGCACACTTCATCATGAACATTTCAT
GCGAGAAAGTGCACATGCATACGCCATCTGACGGCACGGGCAGCAGTGAC
TCTCTTTGTTGCCCTGGAGCGTATGCACAATATTTGGTATGCATGTGATT
TTTTTCCCTGTTGATTTGCATTGTTCACGCGCCTGCTGTAGCACGAGCAT
GCCAAGAACATTAAGGAACTGAAGGACCAGCATGCAAAGGACGTGCAGAG
CTTGCAGAACAAGATCTTCACCATGGAGCTGGGTCATGTGCGTACATGCT
GAGCTGCTGTTTTATCTTTGATTTGTACACGCATGAATGCCCTCTCTTGA
TCTGCCTGTTCCGACAAGCAGATTTGACGATTTGACCGTATTTCAAGCCC
TGTTTCAGGCGTGTTTTGGCATGTGATTGAAGTTGCGATGCCGCCAACAC
GATGCGCTGTTGTGTCACACCTGGTGACTATGGACTGCATACTTCAACAT
TTTCATACTTCAACGCTTACACAGGTGCTTAAGCTTTCTCAAGGCTATGC
ACTGTGGATAAGTTGGCAGTGTTCTTCAGAGCAGTACACCGATTACATGC
GCGCAGCGTGCGCGCCTCTGTTGCACGACGTTTGGAAGGGTATAGGGTTA
GGGTCAAACCCTGACGGTAATGTCTAGGGTTGGGGTCAACCTGACCTTAA
TCACGCACACAAACGTTTGTGCCCGCAATACTTGGCGACTTCACCTCCCG
GTGCGCCTCTAGATGTCCAACAGCAGTTACACTCACAGATGCATGCGCGA
CGTGCAGTTTCTTGCATCAACAAGTGCACATGCATCCCTGCCATGTCTTG
TGCATACCATTGACTGTCTTGTCCATGGCGATCTGGCTTGCAATGTCAAC
CCCAACTTTCGTGCAGAATGTCGAATAGTCCTCAGTGAAGTCGCATCGCA
ATGTATCCCACTGTGCAATGGAGAACCCACAACGCTCACGCTTTCTAATG
CTGATCCTGCAGGCTGAGGCGGTGCGGCAGCTGGAGGCGGAGCGCGACAA
GGCGCAGTCCGATTTCGCGTTAGCAGAGGCGGCTAGAGAGAAGGCGACCG
AGGCGTCGAAGCTGGTGCGCGACAACGCCGCCGCGCAGTGCGAGGCGGCA
AGGCGCGATGCCTCTGCCGAGGCGCATGCAGAACTTCTCGACGCAGCAAC
GTGACTCGAGGCACAGGTAAGATGACGTGTTTACTGACAGTTGGGGGGTC
CGCGCCTCCAGTACTTGAAGGGCGATCGGGTCTGGAGGCCGAAGGGTGGG
GATAGGGTCAGGCTCGCGTCCGCATGTCATCTGGACTGCGCTGTTTTCAG
GATGCGTGTGTAGTTAGCCAGCGAGGCGCGCACACGGCTCTTCAGCTGCT
GACGCTGCACCTGTTGCCGAATGCTGCCGCTGAGTGTGACTGGTACAAGT
ACGGCTCAGAGTTAAACACTTATCACTGTGACCAAAGGAACACTACACAG
CGATCGGGGGCGCGCGCCGTCCCCTTCGCCACCGCCCCATTGCTCAGCGC
AACAGCGCCGCGCTCCCAGCGCGCGCCCGCACTAGCTTGAACTTCAACCC
CTTGACCCACGCATCGGAGGTGAGCTACACCATGCGCGCGCATTGCCGGC
GCGCGCAGCCTCCTTGCCGCGGCAGCAGCAACGCTCAGCGCGAACGTCTT
GCACGGCGCGGCGGCGCACTCGCTCGTGACAGTTCGGGACAGCGCGCAAG
GCTGAAAGACTCACCTGCTCCTTCAACTCGTCAAACTCTACTCGGTCATC
AGAGTCCCTGACATCCTTCAGGCGCTGTGTAACAGTTTCCAAACTTCAAT
CTTGGTAACATTTTGGGAACTGCGCGCAAGGCGGAAGATCGCTCCTTCAA
CTCGTCGAGCTCCTTTACTCGGTCATCAGAGTCTCACGTGCCAGTTCTGC
TATGCGCTTCATGCAGTGCACTGATGTACCTCCAAGTACGACAACAGGAC
TTCACAGCAGGTCAAGACTTGCTGCACTTGCTGGAGGACTACAGGCACTG
TTTGTTGACGAATGATAGATCTTCTGCCATTTCAAAAGCGTACACCATAC
ATACATACGTACATGCACAGAGTGTGCCGTCATGCCATATTGTAATATTG
CTGGCATCATCTAGAATTATCCGTCGTCACATGCGTTGTGCGTGTTTCTT
CGGACGCAGCGGAAGCTACTGCGGGAGCAGGTAGAGCGTGCGCGTGCTGA
GGATCCGCAGCTGCAAAAGGAGCGAAGAGTCGCGGCGCAGAGGATCGAGC
AGCTGGAGCAGGA

Coding sequence (CDS) from alignment at Contig_70:546892..550604-

>mRNA_10904 ID=mRNA_10904|Name=jgi.p|Trimin1|350736|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=867bp|location=Sequence derived from alignment at Contig_70:546892..550604- (Tribonema minus UTEX_B_3156 )
ATGGCTCACGCGCACCGCTCGCTTGCATCCGTCTGCCTGCAGGTCCAGCG
GAAGGACGCGGAGCTGCGAGCACTGCAGTCGCGCTGCACGCTGCTCCCGG
CAGACACGGACATTGGCGCCGCCATGCAGATGGAGCAGTACTGGCCTCAG
GCGCACCGGCCGGCAGGCGTCTTCTTCGCTGAGCCAACGGTGCAGCAACA
GCATGAGCTTCTTCCTGAGCATCACCTGCAGCAGAACGAGCTTCCACCTC
CGCCGCGCCAGCACGTGCTGCCTCTTCCCGACCAGCAGCAATACCAGCCG
CCTTCGTTCGAGTCGACGCGGCAGCAGCGCAAGCACGTCTCTCAGGACAA
CCTGAAGCAACTGTCGGACCAGGTGGTGCAGCTCCAAGGGCAGCGCGCGT
TCTTGCGAGGGCAACTGGAGCACTGCAGGGAGCTGTACCAGTGCGCGCAG
CAGAGGGTCCAGTGGGGTCAAGCACTGGAGCTGCGCGTAGATGCGCGCCT
CCAGGGCCTTATCCAAGACCGCATTGTCAGCGAGACGCAGGCGAGCGTGG
GGATGCAGAAGCTGCGACGTGCCCTGCAGCACGAGCATGCCAAGAACATT
AAGGAACTGAAGGACCAGCATGCAAAGGACGTGCAGAGCTTGCAGAACAA
GATCTTCACCATGGAGCTGGGTCATGCTGAGGCGGTGCGGCAGCTGGAGG
CGGAGCGCGACAAGGCGCAGTCCGATTTCGCGTTAGCAGAGGCGGCTAGA
GAGAAGGCGACCGAGGCGTCGAAGCTGGTGCGCGACAACGCCGCCGCGCA
GTGCGAGGCGGCAAGGCGCGATGCCTCTGCCGAGGCGCATGCAGAACTTC
TCGACGCAGCAACGTGA