mRNA_10883 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|87063
Unique NamemRNA_10883
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|87063 vs. uniprot
Match: A0A835YLE4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE4_9STRA)

HSP 1 Score: 563 bits (1451), Expect = 3.950e-200
Identity = 277/283 (97.88%), Postives = 280/283 (98.94%), Query Frame = 1 
Query:   25 MAPLQRQKCQVEATGPIIYQNFGGEELDHGITLATCPNLKPDLSELPLTKPGTAGERLARSALFRSRVGPPIHYVPLSRNNENHGTVLFTSSTLKPDLSEVPLTKPGTDGERLGRSALFRSRARRPLRDVPVDLAEPNRGTVLCTCPHLQPNMAYSYRTNVAGGRPTERLGVRGGFTPGVVTRAGGPACDVPVAAAPVDRGTVLYTSAALRPDESQELRLKQGTSDERQGRVGSFEHGDAHLRMPTAAEAALWKEAGQKGGRRFAPGHFLAGTTVFAGCVPAY 873
            MAPLQRQKCQ+E TGPIIYQN+ GEELDHGITLATCPNLKPDLSELPLTKPGTAGERLARSALFRSRVGPPIHYVPLSRNNENHGTVLFTSSTLKPDLSEVPLTKPGTDGERLGRSALFRSRARRPLRDVPVDLAEPNRGTVLCTCPHLQPNMAYSYRTNVAGGR TERLGVRGGFTPGVVTRAGGPACDVPVAAAPV+RGTVLYTSAALRPDESQELRLKQGTSDERQGRVGSFEHGDAHLRMPTAAEAALWKEAGQKGGRRFAPGHFLAGTTVFAGCVPAY
Sbjct:    1 MAPLQRQKCQMEVTGPIIYQNYTGEELDHGITLATCPNLKPDLSELPLTKPGTAGERLARSALFRSRVGPPIHYVPLSRNNENHGTVLFTSSTLKPDLSEVPLTKPGTDGERLGRSALFRSRARRPLRDVPVDLAEPNRGTVLCTCPHLQPNMAYSYRTNVAGGRSTERLGVRGGFTPGVVTRAGGPACDVPVAAAPVNRGTVLYTSAALRPDESQELRLKQGTSDERQGRVGSFEHGDAHLRMPTAAEAALWKEAGQKGGRRFAPGHFLAGTTVFAGCVPAY 283
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BLAST of jgi.p|Trimin1|87063 vs. uniprot
Match: A0A835YKS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS3_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.310e-83
Identity = 154/236 (65.25%), Postives = 166/236 (70.34%), Query Frame = 1 
Query:  169 TKPGTAGERLARSALFRSRV---GPPIHYVPLSRNNENHGTVLFTSSTLKPDLSEVPLTKPGTDGERLGRSALFRSRARRPLRDVPVDLAEPNRGTVLCTCPHLQPNMAYSYRTNVAGGRPTERLGVRGGFTPGVVTRAGGPACDVPVAAAPVDRGTVLYTSAALRPDESQELRLKQGTSDERQGRVGSFEHGDAHLRMPTAAEAALWKEAGQKGGRRFAPGHFLAGTTVFAGCVP 867
            TKPG   ER   SA         G   H VP+  +  NHGTVL+TS+TL PD+      K G   ER G S   +    RP  D      E N GTVL T PHLQPNMAYSYRTN+AGGRPTERLGVRGGFTPGVV  AGG A DVP+AA     GTVLYTSAALRPD SQE RLKQGT  ERQGRVGSFEHGDAHLRMP+AA+AALWKEAGQKGGRRFA GH+LAGTT+FAG VP
Sbjct:    9 TKPGHPLEREGYSAWAHGVTVFAGGVPHDVPVPHDQANHGTVLYTSATLAPDMRGELRLKTGAVDERQGVSGA-QPHWIRPAHDAVAP--ELNHGTVLATFPHLQPNMAYSYRTNIAGGRPTERLGVRGGFTPGVVICAGGAARDVPIAAER-HHGTVLYTSAALRPDASQEPRLKQGTCYERQGRVGSFEHGDAHLRMPSAADAALWKEAGQKGGRRFAEGHYLAGTTIFAGTVP 240
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BLAST of jgi.p|Trimin1|87063 vs. uniprot
Match: A0A836CPV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPV2_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.550e-65
Identity = 122/213 (57.28%), Postives = 147/213 (69.01%), Query Frame = 1 
Query:  241 HYVPLSRNNENHGTVLFTSSTLKPDLSEVPLTKPGTDGERLGRSALFRSRARRPLRDVPVDLAEPNRGTVLCTCPHLQPNMAYSYRTNVAGGRPTERLGVRGGFTPGVVTRAGGPACDVPVAAAPVDRGTVLYTSAALRPDESQELR--LKQGTSDERQGRVGSFEHGDAHLRMPTAAEAALWKEAGQKGGRRFAPGHFLAGTTVFAGCVPAY 873
            H V   +   NHGTVLFTS++L+P+L +    K  +DGER GRS   ++    P  D  V L E N GT+L T PHL+P+++Y  RTN AGGR TERLG RG FTPG   RAGGPA DVPV A  ++RGTVL+T A L  D +      LK GT+DER GR GSFEHGDAHLRMPTAA+AALW+E GQ+GGRR+A GH+LAG +V AG  P Y
Sbjct:   42 HDVRPPKETTNHGTVLFTSASLRPNLEDELRIKSCSDGEREGRSG-SQAHWTHPAHDD-VQLDELNHGTILATFPHLRPDLSYEGRTNAAGGRATERLGARGSFTPGRAIRAGGPARDVPVPAPILNRGTVLFTLATLACDAAAAAAPALKPGTTDERVGRAGSFEHGDAHLRMPTAADAALWREDGQRGGRRYAGGHWLAGASVMAGGAPVY 252
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BLAST of jgi.p|Trimin1|87063 vs. uniprot
Match: A0A836CJG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG1_9STRA)

HSP 1 Score: 172 bits (436), Expect = 7.260e-47
Identity = 116/227 (51.10%), Postives = 130/227 (57.27%), Query Frame = 1 
Query:  271 NHGTVLFTSSTLKPDLSEVPLTKPGTDGERLGRSALFRSRARRPLRDVPVDLAE---------PNRGTVLCTCPHLQPNMAYSYRTNVAGGRPTERLGVRGGFTPGVVTRAGGPA-CDVPVAAAPV-----------DRGTVLYTSAALRPDESQELRLKQGT-SDERQGRVGSFEHGDAHLRMPTAAEAALWKE---AGQKG-GRRFAPGHFLAGTTVFAGCVPAY 873
            N GTVLFTS TL+PDLS VPLTKPG  GER+GRS    S+  R  R    D            P+RGTVL   PHLQP  A +   NV GGRPTER G RG FTPG    AGGPA   +P+   P            DRG VL +   L PD S   R K GT  +ER GRVGSFE G   LRMP+AA+AA W+E      KG GRRF P H+LAGTTV +G  P Y
Sbjct:   63 NSGTVLFTSETLRPDLSSVPLTKPGWPGERVGRSG---SQPHRHARSHSADXXXXXXXXXXXAPDRGTVLGEWPHLQPAAADA-GMNVVGGRPTERRGARGSFTPGSRILAGGPARASLPLLPPPEGDXXXXXXDVPDRGRVLSSCERLTPDLSGAARCKPGTRGEERWGRVGSFEGGATRLRMPSAADAARWREDDGGAHKGVGRRFGPAHYLAGTTVLSGGAPTY 285
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|87063 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YLE4_9STRA3.950e-20097.88Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YKS3_9STRA1.310e-8365.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CPV2_9STRA1.550e-6557.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJG1_9STRA7.260e-4751.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_70contigContig_70:323379..325062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|87063|CE87062_114
Hectar predicted targeting categoryother localisation
TranscriptId87385
TrackFilteredModels1
ProteinId87063
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|87063gene_10883Tribonema minus UTEX_B_3156 geneContig_70 323379..325062 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10883_1exon_10883_1Tribonema minus UTEX_B_3156 exonContig_70 323379..323445 +
exon_10883_2exon_10883_2Tribonema minus UTEX_B_3156 exonContig_70 323809..325062 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10883UTR5_10883Tribonema minus UTEX_B_3156 five_prime_UTRContig_70 323379..323402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10883CDS_10883Tribonema minus UTEX_B_3156 CDSContig_70 323403..323445 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10883UTR3_10883Tribonema minus UTEX_B_3156 three_prime_UTRContig_70 324618..325062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|87063Trimin1|87063|CE87062_114Tribonema minus UTEX_B_3156 polypeptideContig_70 323403..324617 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10883 ID=mRNA_10883|Name=jgi.p|Trimin1|87063|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1321bp|location=Sequence derived from alignment at Contig_70:323379..325062+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGACACAGCAAGACACACACAGACATGGCTCCGCTGCAGCGACAGAAGTG
CCAAGTGGAGGCTACCGGCCCCATCATCTACCAGAACTTTGGCGGTGAGG
AGCTCGACCACGGTATCACCCTGGCCACGTGCCCGAACCTCAAGCCCGAC
CTCAGCGAGCTGCCCCTGACCAAGCCCGGCACCGCAGGCGAGCGCCTCGC
ACGCAGCGCCCTCTTCAGGTCGCGCGTGGGCCCCCCCATCCACTACGTCC
CCCTCTCGCGCAACAACGAGAACCACGGCACCGTCCTCTTCACGAGCAGC
ACGCTCAAGCCCGACCTAAGCGAGGTGCCGCTCACCAAGCCCGGCACCGA
CGGCGAGCGCCTCGGCCGCAGCGCGCTGTTCCGCTCGCGCGCGCGCCGCC
CGCTGCGCGACGTCCCCGTCGACCTCGCCGAGCCCAACCGCGGCACCGTC
CTCTGCACGTGCCCGCACCTCCAGCCCAACATGGCGTACTCGTACCGCAC
CAACGTCGCGGGGGGGCGCCCCACGGAGCGCCTCGGCGTGCGCGGCGGTT
TCACGCCGGGCGTCGTCACCCGCGCCGGCGGCCCCGCGTGCGACGTGCCC
GTGGCAGCGGCGCCCGTCGACCGCGGCACCGTGCTGTACACGAGCGCGGC
GCTGCGGCCCGACGAGTCCCAGGAGCTGCGGCTCAAGCAGGGCACCAGCG
ACGAGCGGCAGGGGCGCGTGGGGTCCTTCGAGCACGGCGACGCTCATCTG
CGCATGCCCACCGCCGCAGAGGCGGCGCTCTGGAAGGAGGCGGGCCAGAA
GGGCGGGCGCCGGTTCGCCCCCGGCCACTTCCTCGCGGGCACCACCGTCT
TTGCGGGCTGCGTGCCCGCGTACTGAGCGCTGCTGCTGCTTTGTGCGGGG
TAGGGGGGGGGGGGGGGGGGGGGGTAAGGGGGGCTGCGCCTGCGCCGACC
GCCTTCTGTTCACGATACCCATACCTACCGCTGTTTGGGGGTGGCATGCG
CCCGGCGCGCGCCGCATAGACGCCACAATGTTCAGCGCTCATGAGCGCAG
TAGTTCGGACCGTTTTCTGGCCCGCAAGCCCTCGATGTCTAATGTAGTAT
AAGGCTTGGCCAATTGCCGCATGGGGCAGTGGGACCCCTGATTTCAGGGG
GGCCTGGAGGCAGCGGCGCATGCATGTTTGTGGTCTTGTGAGTTGTGTAG
ATAGCATCAGCTAACGACGTTGTGCATAGCTACAGCGGAGGCTTTGTACA
TCACGCAAGGCTGTCTGCGCCAGGGGCTACATCATCACATCACATGAGGA
AATGGCATGGGTATTTCTGCG
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protein sequence of jgi.p|Trimin1|87063

>Trimin1|87063|CE87062_114 ID=Trimin1|87063|CE87062_114|Name=jgi.p|Trimin1|87063|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=284bp
MAPLQRQKCQVEATGPIIYQNFGGEELDHGITLATCPNLKPDLSELPLTK
PGTAGERLARSALFRSRVGPPIHYVPLSRNNENHGTVLFTSSTLKPDLSE
VPLTKPGTDGERLGRSALFRSRARRPLRDVPVDLAEPNRGTVLCTCPHLQ
PNMAYSYRTNVAGGRPTERLGVRGGFTPGVVTRAGGPACDVPVAAAPVDR
GTVLYTSAALRPDESQELRLKQGTSDERQGRVGSFEHGDAHLRMPTAAEA
ALWKEAGQKGGRRFAPGHFLAGTTVFAGCVPAY*
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mRNA from alignment at Contig_70:323379..325062+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10883 ID=mRNA_10883|Name=jgi.p|Trimin1|87063|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1684bp|location=Sequence derived from alignment at Contig_70:323379..325062+ (Tribonema minus UTEX_B_3156 )
CGACACAGCAAGACACACACAGACATGGCTCCGCTGCAGCGACAGAAGTG
CCAAGTGGAGGCTACCGGTAAGCCGATGGTCAATTGACGCGAGGCTCACT
CACCAGCCTGTTGCGATTGTTTAGCCTTGGTAGAAGGCTGAGCAGCGACA
CAAAATTGTGTACAAGACGCTGGTGTTCCTCCGCAGTCTCTCGCTCTCTC
TGCCCAGCCAGCCAATTGTTGCTTGAAAGCTGTGATACATCCCCACCTAT
CAGCTTGCATTGCTAAGCAGTCACTACTGGTTTGTTGCTCTGTAGCAGCT
GACAAGTCTATTTGTGCTCGAGGGCCGAAGCCATCAAGTGATTTACTGAT
TTAACCTAGCTTGCTTTACTGAGTTACAGCAATTCACTAATTCACTCACT
CTGGATGTAAACACCTCCCTGTTCTCACAGGCCCCATCATCTACCAGAAC
TTTGGCGGTGAGGAGCTCGACCACGGTATCACCCTGGCCACGTGCCCGAA
CCTCAAGCCCGACCTCAGCGAGCTGCCCCTGACCAAGCCCGGCACCGCAG
GCGAGCGCCTCGCACGCAGCGCCCTCTTCAGGTCGCGCGTGGGCCCCCCC
ATCCACTACGTCCCCCTCTCGCGCAACAACGAGAACCACGGCACCGTCCT
CTTCACGAGCAGCACGCTCAAGCCCGACCTAAGCGAGGTGCCGCTCACCA
AGCCCGGCACCGACGGCGAGCGCCTCGGCCGCAGCGCGCTGTTCCGCTCG
CGCGCGCGCCGCCCGCTGCGCGACGTCCCCGTCGACCTCGCCGAGCCCAA
CCGCGGCACCGTCCTCTGCACGTGCCCGCACCTCCAGCCCAACATGGCGT
ACTCGTACCGCACCAACGTCGCGGGGGGGCGCCCCACGGAGCGCCTCGGC
GTGCGCGGCGGTTTCACGCCGGGCGTCGTCACCCGCGCCGGCGGCCCCGC
GTGCGACGTGCCCGTGGCAGCGGCGCCCGTCGACCGCGGCACCGTGCTGT
ACACGAGCGCGGCGCTGCGGCCCGACGAGTCCCAGGAGCTGCGGCTCAAG
CAGGGCACCAGCGACGAGCGGCAGGGGCGCGTGGGGTCCTTCGAGCACGG
CGACGCTCATCTGCGCATGCCCACCGCCGCAGAGGCGGCGCTCTGGAAGG
AGGCGGGCCAGAAGGGCGGGCGCCGGTTCGCCCCCGGCCACTTCCTCGCG
GGCACCACCGTCTTTGCGGGCTGCGTGCCCGCGTACTGAGCGCTGCTGCT
GCTTTGTGCGGGGTAGGGGGGGGGGGGGGGGGGGGGGTAAGGGGGGCTGC
GCCTGCGCCGACCGCCTTCTGTTCACGATACCCATACCTACCGCTGTTTG
GGGGTGGCATGCGCCCGGCGCGCGCCGCATAGACGCCACAATGTTCAGCG
CTCATGAGCGCAGTAGTTCGGACCGTTTTCTGGCCCGCAAGCCCTCGATG
TCTAATGTAGTATAAGGCTTGGCCAATTGCCGCATGGGGCAGTGGGACCC
CTGATTTCAGGGGGGCCTGGAGGCAGCGGCGCATGCATGTTTGTGGTCTT
GTGAGTTGTGTAGATAGCATCAGCTAACGACGTTGTGCATAGCTACAGCG
GAGGCTTTGTACATCACGCAAGGCTGTCTGCGCCAGGGGCTACATCATCA
CATCACATGAGGAAATGGCATGGGTATTTCTGCG
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Coding sequence (CDS) from alignment at Contig_70:323379..325062+

>mRNA_10883 ID=mRNA_10883|Name=jgi.p|Trimin1|87063|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=852bp|location=Sequence derived from alignment at Contig_70:323379..325062+ (Tribonema minus UTEX_B_3156 )
ATGGCTCCGCTGCAGCGACAGAAGTGCCAAGTGGAGGCTACCGGCCCCAT
CATCTACCAGAACTTTGGCGGTGAGGAGCTCGACCACGGTATCACCCTGG
CCACGTGCCCGAACCTCAAGCCCGACCTCAGCGAGCTGCCCCTGACCAAG
CCCGGCACCGCAGGCGAGCGCCTCGCACGCAGCGCCCTCTTCAGGTCGCG
CGTGGGCCCCCCCATCCACTACGTCCCCCTCTCGCGCAACAACGAGAACC
ACGGCACCGTCCTCTTCACGAGCAGCACGCTCAAGCCCGACCTAAGCGAG
GTGCCGCTCACCAAGCCCGGCACCGACGGCGAGCGCCTCGGCCGCAGCGC
GCTGTTCCGCTCGCGCGCGCGCCGCCCGCTGCGCGACGTCCCCGTCGACC
TCGCCGAGCCCAACCGCGGCACCGTCCTCTGCACGTGCCCGCACCTCCAG
CCCAACATGGCGTACTCGTACCGCACCAACGTCGCGGGGGGGCGCCCCAC
GGAGCGCCTCGGCGTGCGCGGCGGTTTCACGCCGGGCGTCGTCACCCGCG
CCGGCGGCCCCGCGTGCGACGTGCCCGTGGCAGCGGCGCCCGTCGACCGC
GGCACCGTGCTGTACACGAGCGCGGCGCTGCGGCCCGACGAGTCCCAGGA
GCTGCGGCTCAAGCAGGGCACCAGCGACGAGCGGCAGGGGCGCGTGGGGT
CCTTCGAGCACGGCGACGCTCATCTGCGCATGCCCACCGCCGCAGAGGCG
GCGCTCTGGAAGGAGGCGGGCCAGAAGGGCGGGCGCCGGTTCGCCCCCGG
CCACTTCCTCGCGGGCACCACCGTCTTTGCGGGCTGCGTGCCCGCGTACT
GA
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