mRNA_10858 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Match: A0A835YM57_9STRA (Putative RNA methylase family UPF0020-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM57_9STRA) HSP 1 Score: 805 bits (2080), Expect = 3.880e-294 Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 1
Query: 1 MGQTEAAVPGVDSYLLLCCGGLEHVVADALRERLHDPGISVEPIPRQELTNNHSGGAAGVGKLLVSVPHASDSADVRAALRGDTEPCIIIGLALIQHQTGTVKPEKEAGLQELGAAVAQSQRWAAALNLLARHLRDQGEAAAAQRIAEGTLRFRSSCVRDGPHDWSSNEAMASVGEAVGERFRWGVSMSAFDCDVCTIVLRDCMACGLTLKLLHHKSGNRLPHEPRAYLQRGGRIAMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAGACVGSVEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYSHVIVAAAAAVDVAQGGEGARWRVEQDLPVNIGGVPASVVVLERL 1251
MGQTEAAVPGVDSYLLLCCGGLEHVVADALRERLHDPGISVEPIPRQELTNNHSGGAAGVGKLLVSVPHASDSADVRAALRGDTEPCIIIGLALIQHQTGTVKPEKEAGLQELGAAVAQSQRWAAALNLLARHLRDQGEAAAAQRIAEGTLRFRSSCVRDGPHDWSSNEAMASVGEAVGERFRWGVSMSAFDCDVCTIVLRDCMACGLTLKLLHHKSGNRLPHEPRAYLQRGGRIAMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAGACVGSVEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYSHVIVAAAAAVDVAQGGEGARWRVEQDLPVNIGGVPASVVVLERL
Sbjct: 1 MGQTEAAVPGVDSYLLLCCGGLEHVVADALRERLHDPGISVEPIPRQELTNNHSGGAAGVGKLLVSVPHASDSADVRAALRGDTEPCIIIGLALIQHQTGTVKPEKEAGLQELGAAVAQSQRWAAALNLLARHLRDQGEAAAAQRIAEGTLRFRSSCVRDGPHDWSSNEAMASVGEAVGERFRWGVSMSAFDCDVCTIVLRDCMACGLTLKLLHHKSGNRLPHEPRAYLQRGGRIAMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAGACVGSVEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYSHVIVAAAAAVDVAQGGEGARWRVEQDLPVNIGGVPASVVVLERL 417
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Match: A0A813GQB1_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GQB1_POLGL) HSP 1 Score: 143 bits (361), Expect = 1.860e-33 Identity = 145/405 (35.80%), Postives = 192/405 (47.41%), Query Frame = 1
Query: 43 LLLCCGGLEHVVADALRERLHDPGISVEPIPRQELTNNHSGGAAGVGKLLVSVPH---ASDSADVRAALRGDTEPCIIIGLALIQHQTGTVKPEKEAGLQELGAAVAQSQRWAAALNLL----AR--------------------HLRDQGEAAAAQRIAEGTLRFRSSCVRDGPHDWSSNEAMASVGEAVGERFRWGVSMSAFDCDVCTIVLRDCMACGLTL--KLLHHKSGNR--------LPHEPRAYLQRG-----GRIAMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAGACVGS---VEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYSH 1122
LLL C GLE V AL+E D ++ +P + G A GK+L++ S D+ G + LA ++ P AGL EL A+ S RW AA+ L AR LR AAA R + LRFR S VRDG H++ ++E M +G A R W VS++ +D ++ +V D GL L + SG LP E R YL+ GR+ LRPST H LLR A + G +LDPMGG+GTIA+EAA+ G +SD S++AT A NAAA A C+ S + V Q DA LQL S+ VVTD+PFG + N +P +E RVL+ GGRAV+L T +H
Sbjct: 20 LLLVCQGLEDVCCAALQEA--DGSCRLKVLPAGGID-----GEASCGKILLATCERDGVSRLLDLACQAPGVQSAFAL--LAAVEKL-----PPSLAGLVELAVALEASPRWPAAVGLWQSARARWLGCSVQAEEERREEYGTEFRLRRLLAAAAGSRKKKAPLRFRGSAVRDGQHEFDTSEVMGRLGGAAKRRMGWQVSLTKYDTELFAVVSHDVAVVGLPLFPEWRGKASGLSDRPERFFVLPREVRPYLRPDVHINCGRM-RLRPSTCHLLLRLAGIKAGDKVLDPMGGVGTIAIEAAVHWPGVSARTSDISMDATKAAELNAAA-ARPCLASGSSLSVAQEDARCLQLEAGSMDAVVTDVPFGNRNRLVWVNGL-LPAFTAELARVLRPGGRAVMLMTRAH 407
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Match: A0A485LJ24_9STRA (Aste57867_20172 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJ24_9STRA) HSP 1 Score: 138 bits (348), Expect = 2.560e-33 Identity = 131/427 (30.68%), Postives = 190/427 (44.50%), Query Frame = 1
Query: 31 VDS--YLLLCCGGLEHVVADALRERLHDPGISVEPI------PRQELTNNHSGGAAGVGKLLVSVPHASDSADVRAALRGDTEPCIIIGLALIQHQTGTVKPEKEAGLQELGAAVAQSQRWAAALNLLARHLRDQGEAAAAQRIAEGTLRFRSSCVRDGPHDWSSNEAMASVGEAVGERFRWGVSMSAFDCDVCTIVLRDCMACGLTLKLLHHKSGNRLPHEPRAYLQRGGRIA-------------MLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAGACVGSVEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYSHVIVAAAAAVDVAQGGEGARWRVEQDLPVNIGGVPASVVVLER 1248
VDS Y+LL GLEH+ + E+L ++ + P+ ++ G A VGKLL+ S A V+A C I T+ AG + VA + W AAL L H + + ++RFR+SCVRDG H +SS VG AV +F +GVS++AFD +V +V+ + GL+L +P A RG R+A LRPSTA+ +L+ A + G +LD M G+GT+ + A D S +A A A N V QW +A L + +V V+ DMPFG G++ N + P+ + E RVL+ GGRAVLL ++V + V + QDLPV IGG+ + +LE+
Sbjct: 3 VDSAAYVLLVIRGLEHLAIKEIHEKLEVTSLTTLTLQADPNNPKMDVMR----GEAAVGKLLLHT--TSTPAQVKAL-------CSIQAFLAYLAHADTIPTTDIAGPDVIATLVATASTWPAALQLWEAHC---------PQSSASSVRFRASCVRDGKHAYSSETIAGKVGAAVVAKFGYGVSLAAFDLEVVCLVMHHHVVLGLSLA-----------DDPEAINFRGSRLAPERRRIPTMKYMSTLRPSTAYLMLQLAECSIGDIVLDCMCGVGTLPASSVF-WAPVVAFGGDISTDAVAQANTNFQG------QRANVCQWSSAHLPVRSNAVDCVLVDMPFGLLCGNSTQNAKLYPKAIKEMARVLRPGGRAVLLVMSKKLLVHSVRNVP--------SIAIVQDLPVTIGGLGVGIYILEK 381
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Match: K3X044_GLOUD (UPF0020 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X044_GLOUD) HSP 1 Score: 135 bits (339), Expect = 5.590e-32 Identity = 131/418 (31.34%), Postives = 201/418 (48.09%), Query Frame = 1
Query: 31 VDSYLLLCCGGLEHVVADALRERLHDPGI---SVEPIPRQELTNNHSGGAAGVGKLLVSVPHASDSADVRAALRGDTEPCIIIGLALIQH------QTGTVKPEKEAGLQELGAAVAQSQRWAAALNLLARHLRDQGEAAAAQRIAEGTLRFRSSCVRDGPHDWSSNEAMASVGEAVGERFRWGVSMSAFDCDVCTIVLRDCMACGLTLKLLHH-KSGNRLPHEPRAYLQRGGR-IAMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAA-LAVAGARCISSDTSVEATACARENAAACAGACVGSVEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYSHVIVAAAAAVDVAQGGEGARWRVEQDLPVNIGGVPASVVVLER 1248
V +YLLL G+E +V +R +L + SV+ P ++ N G AA VG++L LR + P ++ L +Q Q+ V ++ AGL+++ V + W AL L H AA ++ A FR SCVRDG H + S E +G AV ++F W V++ AFD ++ I+ + M G++L K +RL +E R + + I+ LRPST + + + A G LD M G+GTI + A A + + A + A +NAA V + + QWDA AL L S+ V+ DMPFG + G+ R N + P+L+ E RVL+ GGRAV+L + +++ + +RV Q VNIGG+ + VLE+
Sbjct: 17 VPTYLLLVMRGMEWLVEKEIRRKLQVTYLEICSVQNDPARKNMNVMQGEAA-VGRIL---------------LRTTSTPAEVMKLQSVQATLAFLVQSDAVITDRAAGLEQMAKLVTDAD-WEPALRLWRAHFPSAD--AAPKKPA-----FRGSCVRDGRHAYRSMEVAGEIGSAVIDKFGWDVNLVAFDLEIVCILYHNFMITGISLADTSKIKFCSRLANEDRKGVTADVKYISTLRPSTTYLMFQLAEYKVGEIFLDSMCGVGTIPIWCAEFADNNLFALGGELDDLAVSKAGQNAATS----VRNTNIMQWDATALPLRSQSIDKVIVDMPFGVRCGNHRINNKIYPKLMKELIRVLRDGGRAVILVMSKKLFLSSFQHLP---------FRVAQVHEVNIGGLAGGIYVLEK 397
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Match: A0A7C3B9X7_9CHLR (RNA methyltransferase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A7C3B9X7_9CHLR) HSP 1 Score: 122 bits (306), Expect = 1.370e-28 Identity = 97/265 (36.60%), Postives = 137/265 (51.70%), Query Frame = 1
Query: 457 FRSSCVRDGPHDWSSNEAMASVGEAVGERFRWGVSMSAFDCDVCTIVLRDCMACGLTLKLLHHKSGNRLPHEPRAYLQRGGRIAMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAGACVGSVEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYSHVIVAAAAAVDVAQGGEGARWRVEQDLPVNIGGVPASVVVLERL 1251
FR + R G H + S + A++G + RF W V + F+ +V + D + G+TL S L R GR A L+ S A+A++R AR PG L+DPM G+GTI +EAALA G RC D S A + A NA V + +W+ L LP+ SV +V DMPFGR+ GS N++ P L E RVL+V GRAVLL+ ++ + +G RWR++ VN+GG+ A + +L RL
Sbjct: 5 FRVTAQRSGDHAYQSPDIAAALGTGLVCRFGWPVKLKGFNLEVMAHLQGDELTLGITL------SPEGLYRRERVAW---GRTA-LKGSIAYAMVRLARPRPGELLVDPMCGVGTIPIEAALAWPGLRCWGGDLSWSAVSRAALNARHVNA----PVHLFRWNVRRLPLPEGSVDALVCDMPFGRRVGSHELNRRIYPPALREMARVLRVDGRAVLLTLEKRLME------QILRGDP--RWRLDAVHLVNVGGLEARLYLLRRL 247
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Match: A0A812MZ83_9DINO (Thumpd3 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812MZ83_9DINO) HSP 1 Score: 125 bits (313), Expect = 3.200e-27 Identity = 96/240 (40.00%), Postives = 130/240 (54.17%), Query Frame = 1
Query: 454 RFRSSCVRDGPHDWSSNEAMASVGEAVGERFRWGVSMSAFDCDVCTIVLRDCMACGLTLKLLHHKSGNRL----------PHEPRAYLQRG-----GRIAMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAG--ACVGSVEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYSH 1122
RFR+S VRDG HD+++ + M +G A R W V+++ +D +V +V GL L + L P E R YL+ GR+ LRPST LL+ A V G+TLLDPMGG+GTIA+EAA+ + R ++SD S +AT A+ N AA A A ++ V Q DA +L AS+ VVTD+PFG + N +P L+E RVL+ GGRA LL T H
Sbjct: 163 RFRASAVRDGRHDFAAGQVMGKLGGAAKRRMGWEVNLTKYDTEVFAVVCGGIAVVGLPLFAEWRGAACGLSDRPERFFVLPREVRPYLRPDVHMNFGRM-RLRPSTCFLLLQVAGVKEGSTLLDPMGGVGTIAIEAAVRIPHVRALTSDISWDATQAAKLNVAAAAPHLASGSTLVVSQEDARSLPNEAASIDFVVTDVPFGNRNRLVWVNGL-LPAFLAEMSRVLRPGGRAALLMTRGH 400
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Match: A0A812MHK0_9DINO (Thumpd3 protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812MHK0_9DINO) HSP 1 Score: 111 bits (278), Expect = 6.920e-23 Identity = 130/419 (31.03%), Postives = 181/419 (43.20%), Query Frame = 1
Query: 40 YLLLCCGGLEHVVADALRERLHDPGISVEPIPRQELTNNHSGGAAGVGKLLVSVPHASDSADVRAALRGDTEPC-----IIIGLALIQHQTGTVKPEKEAGLQELGAAVAQSQRWAAALNLLARHLRDQGEAAAAQRIAEGTLRFRSSCVRDGPHDWSSNEAMASVGEAVGERFRWGVSMSAFDCDVCTIVLRDCMACGLTLKLLHHK-----SGNRLPHEPRAYLQRGGRIAMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAGACVG------SVEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYSHVIVAAAAAVDVAQGGEGARWRVEQDLPVNIGGVPASVVVLER 1248
YLLLC GLE A+AL R + IP + S G A VGKL+V + G+ PC II AL+ TG + +KEA +++L W A L L A E T FR+S VRDG H+++S EAM +VG VG W V++ +D +V I+ RD + GL+ L ++LP E R + R LR STA LL A V+ G LLD GG+GTIA+EAA R +S+D S AC R A A +G SVEV VV+++PFG +N LL+ +RV++ GGR VL++ S + + + +W + N+GG ++ R
Sbjct: 68 YLLLCTRGLEDQ-AEALLWRSLGREVPSWRIPPPQDLPRVSEGHAAVGKLVVGLED------------GEEFPCGGIPGIIHIYALVDSATG-LSDDKEAAMKQLLT-------WTAGLGP---ELLTAVRLTPASAATEAT--FRASVVRDGEHNFTSEEAMPAVGGGVGMAMPWKVNLKTYDIEVTAIIHRDTVVLGLSCAQLGKSRRGATQPSKLPREQRPWHLSDARH--LRFSTARLLLELAEVSSGDRLLDLCGGMGTIALEAACCFPDLRAVSADVSQR--ACQRAEANVAAARSLGLLGPGSSVEVLVRGVLGWTRSSQEFDVVVSELPFGVSISILDSNV-----LLTALQRVVRPGGRVVLIAPRSE-------SPSIEEHTLSDKWSDYRRCDGNVGGTSVHILYFRR 444
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Match: A0A7C6DLR0_9CHLR (Methyltransferase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6DLR0_9CHLR) HSP 1 Score: 110 bits (274), Expect = 9.610e-23 Identity = 69/182 (37.91%), Postives = 106/182 (58.24%), Query Frame = 1
Query: 706 AMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAGACVGSVEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYSHVIVAAAAAVDVAQGGEGARWRVEQDLPVNIGGVPASVVVLERL 1251
A L+P+ AHA++ +R P +LDPM G+GTI +E A+ + I+ D +A + N G + + +WDAA L L D+ V+ V+T++PFGRQ GS ++N PRLL+EW RVL+ GGR VLL+T S ++ AA + R R+ + L V + G+PA++ V+ R+
Sbjct: 282 ASLKPTVAHAMVLLSRPRPDDVVLDPMCGVGTIIIERAMHSRFRQLIAGDLDRQAVSATLRNV----GPRYKPISIQRWDAATLPLADSCVSAVLTNLPFGRQVGSHQSNLALYPRLLAEWARVLRPGGRMVLLTTESDLVERVAA--------DDRRLRISRRLSVIVRGLPATLYVIARV 451
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Match: A0A7S3SZ08_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SZ08_EMIHU) HSP 1 Score: 106 bits (265), Expect = 4.360e-22 Identity = 115/338 (34.02%), Postives = 152/338 (44.97%), Query Frame = 1
Query: 16 AAVPGVDSYLLLCCGGLEHVVADALRERLHDPGISVEPIPRQELTNNHSGGAAGVGKLLVSVPHASDSADVRAALRGDTEPCIIIGLALIQHQTGTVKPEKEAGLQELGAAVAQ--SQRWAAALNLLARHLRDQGEAAAAQRIAEGTLRFRSSCVRDGPHDWSSNEAMASVGEAVGE-RFRWGVSMSAFDCDVCTIVLRDCMACGLTLKLLHHKSGNRLPHEPRAYLQRGGRIAMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAGACVGSVEVHQWDAAALQ----LPDASVTHVVTDMPFG 1008
AAV + Y LL GLE V AL G+ +P S G+AG +LV+ S A R + P + LA++ V+ E E G L AAV +RW +A+ A H A + FR + +R G HD+ S +++G AV + W V + A D V +++ + G L + + LP EPR +L RG R A +RP A L R A G LLDP GG+G +A+EAAL +A S D A AR NAAA A G V VH DAA L LP ASV V+ D+PFG
Sbjct: 26 AAVVLMHDYALLTTAGLESVALHALASEC---GLRASALPAPTARKGESFGSAGGLGILVA------SRQEPLAARALSAPVLQAALAVV------VRCEVEDG-DVLAAAVGSVSEERWRSAMRTHAAH---------AAPLPPSAPSFRIASLRAGQHDFDSRALSSALGAAVSALQPSWRVDLEAPDVCVLALLVNRSLLIGALLPPFSPRKSDPLPMEPRQWLVRGER-AHMRPHRAALLARLLAPADGEVLLDPTGGVGILAIEAAL-LASVTAHSVDLDPAACDAARANAAAAAPRLRGRVTVHCGDAARLGGEVGLPRASVDCVLADLPFG 336
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Match: A0A1Q9EYT3_SYMMI (THUMP domain-containing protein 3 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EYT3_SYMMI) HSP 1 Score: 107 bits (266), Expect = 3.240e-21 Identity = 123/376 (32.71%), Postives = 167/376 (44.41%), Query Frame = 1
Query: 40 YLLLCCGGLEHVVADALRERLHDPGISVEPIPRQELTNNHSGGAAGVGKLLVSVPHASDSADVRAALRGDTEPC-----IIIGLALIQHQTGTVKPEKEAGLQELGAAVAQSQRWAAALNLLARHLRDQGEAAAAQRIAEGTLRFRSSCVRDGPHDWSSNEAMASVGEAVGERFRWGVSMSAFDCDVCTIVLRDCMACGLTLKLLHHK-----SGNRLPHEPRAYLQRGGRIAMLRPSTAHALLRAARVAPGATLLDPMGGIGTIAVEAALAVAGARCISSDTSVEATACARENAAACAGACVG------SVEVHQWDAAALQLPDASVTHVVTDMPFGRQYGSARANKQQVPRLLSEWRRVLKVGGRAVLLSTYS 1119
YLLLC GLE A+AL R + IP + S G A VGKL++ + D PC II AL+ G + +KEA +++L W A L L A E T FR+S VRDG H+++S EAM +VG VG W V++ +D +V I+ RD + GL+ L ++LP E R + R LR STA LL A V+ G LLD GG+GTIA+EAA R +S+D S AC R A A +G SVEV + VV+++PFG +N LL+ +RV++ GGR VL++ S
Sbjct: 68 YLLLCTRGLEDQ-AEALLWRSLGREVPSWRIPPPQDLPRVSEGHAAVGKLVIGLKDDEDF------------PCGGIPGIIHIYALVDSARG-LSDDKEAAMKQLLT-------WTAGLGP---ELLTAVRLTPASTATEAT--FRASVVRDGEHNFTSEEAMPAVGGGVGMAMPWKVNLKTYDIEVTAIIHRDTVVLGLSCAQLGKSRRGATQPSKLPREQRPWHLSDARH--LRFSTARLLLELAEVSAGDRLLDLCGGMGTIALEAACCFPDLRAVSADVSQR--ACQRAEANVAAARSLGLLGLGSSVEVLVRGVSGWTRSSQEFDVVVSELPFGVSISILDSNV-----LLTAIQRVVRPGGRVVLIAPCS 408 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350716 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10858 ID=mRNA_10858|Name=jgi.p|Trimin1|350716|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1254bp|location=Sequence derived from alignment at Contig_70:147293..151459- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGGCAAACGGAGGCGGCGGTGCCTGGTGTGGACAGCTATCTGCTGCTback to top protein sequence of jgi.p|Trimin1|350716 >Trimin1|350716|estExt_Genemark1.C_Ctg_700018 ID=Trimin1|350716|estExt_Genemark1.C_Ctg_700018|Name=jgi.p|Trimin1|350716|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=418bp MGQTEAAVPGVDSYLLLCCGGLEHVVADALRERLHDPGISVEPIPRQELTback to top mRNA from alignment at Contig_70:147293..151459- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10858 ID=mRNA_10858|Name=jgi.p|Trimin1|350716|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4167bp|location=Sequence derived from alignment at Contig_70:147293..151459- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_70:147293..151459- >mRNA_10858 ID=mRNA_10858|Name=jgi.p|Trimin1|350716|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1254bp|location=Sequence derived from alignment at Contig_70:147293..151459- (Tribonema minus UTEX_B_3156 )back to top |