mRNA_10841 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|173333
Unique Name	mRNA_10841
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|173333 vs. uniprot
Match: A0A835ZF24_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF24_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.420e-46
Identity = 440/440 (100.00%), Postives = 440/440 (100.00%), Query Frame = 1

Query:    1 MRAAISGHVHCVTALLQHCPEKQVLAMKNGLTALTMAAQCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVLPADNDTVSXXXXXXXXXXXXXXXXXXXXXXXXQVLANYDGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPADNHTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTQLRTAQGRSALKTAARVRAADVIRLLLLAGDYPNGLSEEEHMVVKPVFIDLCQQGAIPERLNAAVVSFVGRVRK 1320
            MRAAISGHVHCVTALLQHCPEKQVLAMKNGLTALTMAAQCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVLPADNDTVSXXXXXXXXXXXXXXXXXXXXXXXXQVLANYDGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPADNHTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTQLRTAQGRSALKTAARVRAADVIRLLLLAGDYPNGLSEEEHMVVKPVFIDLCQQGAIPERLNAAVVSFVGRVRK
Sbjct:    1 MRAAISGHVHCVTALLQHCPEKQVLAMKNGLTALTMAAQCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVLPADNDTVSXXXXXXXXXXXXXXXXXXXXXXXXQVLANYDGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPADNHTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTQLRTAQGRSALKTAARVRAADVIRLLLLAGDYPNGLSEEEHMVVKPVFIDLCQQGAIPERLNAAVVSFVGRVRK 440

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|173333 vs. uniprot

BLAST of jgi.p|Trimin1|173333 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZF24_9STRA	1.420e-46	100.00	Ankyrin repeat-containing domain protein n=1 Tax=T...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_101	contig	Contig_101:519942..521360 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|173333\|e_gw1.101.71.1
Hectar predicted targeting category	other localisation
TranscriptId	173655
Track	FilteredModels1
ProteinId	173333

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|173333	gene_10841	Tribonema minus UTEX_B_3156	gene	Contig_101 519942..521360 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|173333	Trimin1\|173333\|e_gw1.101.71.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_101 519942..521360 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10841_2	exon_10841_2	Tribonema minus UTEX_B_3156	exon	Contig_101 519942..520685 -
exon_10841_1	exon_10841_1	Tribonema minus UTEX_B_3156	exon	Contig_101 520782..521360 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10841	CDS_10841	Tribonema minus UTEX_B_3156	CDS	Contig_101 520782..521360 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_101:519942..521360-
coding sequence from alignment at Contig_101:519942..521360-

spliced messenger RNA

>mRNA_10841 ID=mRNA_10841|Name=jgi.p|Trimin1|173333|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1323bp|location=Sequence derived from alignment at Contig_101:519942..521360- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGCAGCCATATCTGGGCACGTCCACTGCGTCACGGCTCTCCTGCA
GCACTGCCCCGAGAAGCAAGTGCTCGCGATGAAGAACGGCCTGACGGCCC
TCACGATGGCAGCCCAATGCGGTCACAAGGACTGCGTCACGGCTCTCCTG
CAGCACTGTTCCGAGAAGCAAGTGCTCGCCAACTATGACGGCATGACGAC
CCTCATGCGGGCAGCCATATCTGGGCACGTCCACTGCGTCACGGCTCTCC
TGCAGCACTGCCCCGAGAAGCAAGTGCTCGCCAACTGTGACGGCACGACG
GCCATCATGTGGTCAGCTCATGGGGGTCACACGGACTGCGTTACGGCTCT
TCTGCAGCATTGCCCCGAGCATCAAGTGCTCGCAAACAGGAGCGGCATGA
CGGCCCTCGCGATGGCAGCCCAAGAGGGTCACACGGACTGCGTTACGACT
CTTCTGCAGCACTGCCCCGAGAAGCAAGTGCTCGCCAACTATGATGGCAC
GACGGCCCTCCTGTACGCAGCCTTCCTTGGGCACGTCCACTGCGTCACGG
CTCTCCTGCAGCACTGCCCTGAGAAGCAACAAGTGCTCCCCGCAGATAAC
GACACCGTGTCGGCCCTCATGCTGGCAGCCGAAGCTGGGCACGTCCACTG
CGTTACGACTCTTCTGCAGCACTGGCCCGAGAAGCAAGTGCTCGCCAACT
ATGACGGTACGACGGCCCTCATGCAGGCAGCTGAAGCTGGGCACGTCCAC
TGCGTCACGGCTCTCCTGCAGCACTGCCCCGAGAAGCAAGTGCTCGCGAT
CAGAGGCGGCATGACGGCCCTCACGATGGCAGCCCATGGGGGTCACGCGG
ACTGCGTTACGGCTCTTCTGCAGCATTGCCCCGAGCAGCAAGTGCTCCCC
GCAGATAACCACACCGTGACGGCCCTCATGCGGGCAGCCGAAGCTGGGCA
CGTCCACTGCGTCACGGCTCTCCTGCAGCATCACCCCGGGCAGCAGGTGT
GTTTCACAGACGCAGTGGGCGACAACGCACTCATCTATGCAGCGCGTGTA
GGAAATGTGCAGTGTGTCAAGGCGCTGCTGCAGCACGCGCCTCATACGCA
GCTGCGCACTGCGCAGGGAAGGTCCGCCCTCAAGACGGCCGCACGAGTGC
GTGCTGCAGATGTAATACGGCTGTTGCTGCTGGCAGGGGACTACCCCAAT
GGCCTGTCCGAGGAGGAGCACATGGTAGTCAAGCCCGTGTTCATAGACTT
GTGCCAACAGGGCGCAATACCCGAACGCCTCAATGCGGCCGTGGTCTCAT
TTGTGGGCAGAGTGCGTAAGTAA

protein sequence of jgi.p|Trimin1|173333

>Trimin1|173333|e_gw1.101.71.1 ID=Trimin1|173333|e_gw1.101.71.1|Name=jgi.p|Trimin1|173333|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=441bp
MRAAISGHVHCVTALLQHCPEKQVLAMKNGLTALTMAAQCGHKDCVTALL
QHCSEKQVLANYDGMTTLMRAAISGHVHCVTALLQHCPEKQVLANCDGTT
AIMWSAHGGHTDCVTALLQHCPEHQVLANRSGMTALAMAAQEGHTDCVTT
LLQHCPEKQVLANYDGTTALLYAAFLGHVHCVTALLQHCPEKQQVLPADN
DTVSALMLAAEAGHVHCVTTLLQHWPEKQVLANYDGTTALMQAAEAGHVH
CVTALLQHCPEKQVLAIRGGMTALTMAAHGGHADCVTALLQHCPEQQVLP
ADNHTVTALMRAAEAGHVHCVTALLQHHPGQQVCFTDAVGDNALIYAARV
GNVQCVKALLQHAPHTQLRTAQGRSALKTAARVRAADVIRLLLLAGDYPN
GLSEEEHMVVKPVFIDLCQQGAIPERLNAAVVSFVGRVRK*

mRNA from alignment at Contig_101:519942..521360-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10841 ID=mRNA_10841|Name=jgi.p|Trimin1|173333|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1419bp|location=Sequence derived from alignment at Contig_101:519942..521360- (Tribonema minus UTEX_B_3156 )
ATGCGGGCAGCCATATCTGGGCACGTCCACTGCGTCACGGCTCTCCTGCA
GCACTGCCCCGAGAAGCAAGTGCTCGCGATGAAGAACGGCCTGACGGCCC
TCACGATGGCAGCCCAATGCGGTCACAAGGACTGCGTCACGGCTCTCCTG
CAGCACTGTTCCGAGAAGCAAGTGCTCGCCAACTATGACGGCATGACGAC
CCTCATGCGGGCAGCCATATCTGGGCACGTCCACTGCGTCACGGCTCTCC
TGCAGCACTGCCCCGAGAAGCAAGTGCTCGCCAACTGTGACGGCACGACG
GCCATCATGTGGTCAGCTCATGGGGGTCACACGGACTGCGTTACGGCTCT
TCTGCAGCATTGCCCCGAGCATCAAGTGCTCGCAAACAGGAGCGGCATGA
CGGCCCTCGCGATGGCAGCCCAAGAGGGTCACACGGACTGCGTTACGACT
CTTCTGCAGCACTGCCCCGAGAAGCAAGTGCTCGCCAACTATGATGGCAC
GACGGCCCTCCTGTACGCAGCCTTCCTTGGGCACGTCCACTGCGTCACGG
CTCTCCTGCAGCACTGCCCTGAGAAGCAAGTGCTCGCCAACTGTGACGGC
ACGACGGCCCTCATGTGGGCAGCCCATGGGGGTCACACGGACTGCGTTAC
GGCTCTTCTGCAGCATTGCCCCGAGCAAGTGCTCCCCGCAGATAACGACA
CCGTGTCGGCCCTCATGCTGGCAGCCGAAGCTGGGCACGTCCACTGCGTT
ACGACTCTTCTGCAGCACTGGCCCGAGAAGCAAGTGCTCGCCAACTATGA
CGGTACGACGGCCCTCATGCAGGCAGCTGAAGCTGGGCACGTCCACTGCG
TCACGGCTCTCCTGCAGCACTGCCCCGAGAAGCAAGTGCTCGCGATCAGA
GGCGGCATGACGGCCCTCACGATGGCAGCCCATGGGGGTCACGCGGACTG
CGTTACGGCTCTTCTGCAGCATTGCCCCGAGCAGCAAGTGCTCCCCGCAG
ATAACCACACCGTGACGGCCCTCATGCGGGCAGCCGAAGCTGGGCACGTC
CACTGCGTCACGGCTCTCCTGCAGCATCACCCCGGGCAGCAGGTGTGTTT
CACAGACGCAGTGGGCGACAACGCACTCATCTATGCAGCGCGTGTAGGAA
ATGTGCAGTGTGTCAAGGCGCTGCTGCAGCACGCGCCTCATACGCAGCTG
CGCACTGCGCAGGGAAGGTCCGCCCTCAAGACGGCCGCACGAGTGCGTGC
TGCAGATGTAATACGGCTGTTGCTGCTGGCAGGGGACTACCCCAATGGCC
TGTCCGAGGAGGAGCACATGGTAGTCAAGCCCGTGTTCATAGACTTGTGC
CAACAGGGCGCAATACCCGAACGCCTCAATGCGGCCGTGGTCTCATTTGT
GGGCAGAGTGCGTAAGTAA

Coding sequence (CDS) from alignment at Contig_101:519942..521360-

>mRNA_10841 ID=mRNA_10841|Name=jgi.p|Trimin1|173333|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1323bp|location=Sequence derived from alignment at Contig_101:519942..521360- (Tribonema minus UTEX_B_3156 )
ATGCGGGCAGCCATATCTGGGCACGTCCACTGCGTCACGGCTCTCCTGCA
GCACTGCCCCGAGAAGCAAGTGCTCGCGATGAAGAACGGCCTGACGGCCC
TCACGATGGCAGCCCAATGCGGTCACAAGGACTGCGTCACGGCTCTCCTG
CAGCACTGTTCCGAGAAGCAAGTGCTCGCCAACTATGACGGCATGACGAC
CCTCATGCGGGCAGCCATATCTGGGCACGTCCACTGCGTCACGGCTCTCC
TGCAGCACTGCCCCGAGAAGCAAGTGCTCGCCAACTGTGACGGCACGACG
GCCATCATGTGGTCAGCTCATGGGGGTCACACGGACTGCGTTACGGCTCT
TCTGCAGCATTGCCCCGAGCATCAAGTGCTCGCAAACAGGAGCGGCATGA
CGGCCCTCGCGATGGCAGCCCAAGAGGGTCACACGGACTGCGTTACGACT
CTTCTGCAGCACTGCCCCGAGAAGCAAGTGCTCGCCAACTATGATGGCAC
GACGGCCCTCCTGTACGCAGCCTTCCTTGGGCACGTCCACTGCGTCACGG
CTCTCCTGCAGCACTGCCCTGAGAAGCAACAAGTGCTCCCCGCAGATAAC
GACACCGTGTCGGCCCTCATGCTGGCAGCCGAAGCTGGGCACGTCCACTG
CGTTACGACTCTTCTGCAGCACTGGCCCGAGAAGCAAGTGCTCGCCAACT
ATGACGGTACGACGGCCCTCATGCAGGCAGCTGAAGCTGGGCACGTCCAC
TGCGTCACGGCTCTCCTGCAGCACTGCCCCGAGAAGCAAGTGCTCGCGAT
CAGAGGCGGCATGACGGCCCTCACGATGGCAGCCCATGGGGGTCACGCGG
ACTGCGTTACGGCTCTTCTGCAGCATTGCCCCGAGCAGCAAGTGCTCCCC
GCAGATAACCACACCGTGACGGCCCTCATGCGGGCAGCCGAAGCTGGGCA
CGTCCACTGCGTCACGGCTCTCCTGCAGCATCACCCCGGGCAGCAGGTGT
GTTTCACAGACGCAGTGGGCGACAACGCACTCATCTATGCAGCGCGTGTA
GGAAATGTGCAGTGTGTCAAGGCGCTGCTGCAGCACGCGCCTCATACGCA
GCTGCGCACTGCGCAGGGAAGGTCCGCCCTCAAGACGGCCGCACGAGTGC
GTGCTGCAGATGTAATACGGCTGTTGCTGCTGGCAGGGGACTACCCCAAT
GGCCTGTCCGAGGAGGAGCACATGGTAGTCAAGCCCGTGTTCATAGACTT
GTGCCAACAGGGCGCAATACCCGAACGCCTCAATGCGGCCGTGGTCTCAT
TTGTGGGCAGAGTGCGTAAGTAA