mRNA_1083 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Match: A0A836CNH0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH0_9STRA) HSP 1 Score: 307 bits (786), Expect = 1.570e-105 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1
Query: 1 MQERSHAVRPLHHREVAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTGL 477
MQERSHAVRPLHHREVAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTGL
Sbjct: 1 MQERSHAVRPLHHREVAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTGL 159
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Match: D7G8W1_ECTSI (tRNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W1_ECTSI) HSP 1 Score: 194 bits (494), Expect = 3.150e-61 Identity = 99/144 (68.75%), Postives = 117/144 (81.25%), Query Frame = 1
Query: 46 VAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTGL 477
+AVS A EE ++ DVP L+ V++A +EALDIRVGRIV AE +PDPDHGNKPSRKYLSLVV LGNE R ++S VR + DVE+AIGK+VL+ AN EEE ILG PSRG+LL +N+SK PMPRTLRTVLLGGG VPPGS V+GL
Sbjct: 3 MAVSHAAAEEISNMEDVPKLKDPVAIADFEALDIRVGRIVLAELIPDPDHGNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSGSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 146
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Match: A0A7S0MGA1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGA1_9CRYP) HSP 1 Score: 144 bits (364), Expect = 1.060e-40 Identity = 71/134 (52.99%), Postives = 101/134 (75.37%), Query Frame = 1
Query: 70 EEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVT 471
E+ D +D+P ++ +VS A ++LDIRVGRI +A+ +PDP+H KPSRKYL L+V +G E R+I++ R ++DVEE+IG+SVLV N E++ +LG S GRLL A+N ++ P+PRTLRTVL GG +PPGS V+
Sbjct: 71 EDNLDPSDIPPVKDEVSNALLDSLDIRVGRIERADLIPDPEHEMKPSRKYLRLIVNIGTEKRTIVAASRGIYDVEESIGRSVLVACNVEQQTVLGVASHGRLLSASNPTRRPIPRTLRTVLSKGGGLPPGSPVS 204
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Match: A0A2R6X722_MARPO (tRNA-binding domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X722_MARPO) HSP 1 Score: 110 bits (276), Expect = 2.410e-27 Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = 1
Query: 70 EEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKP-----SRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTG 474
E A PA++P+V V+++E+LDIRVG I A+ V DP+ K SRK+L L V +G E R ++S + V DVE+A+GK VL VAN +LG S G LL NY PMPR+ + +L G G +PPGS+V G
Sbjct: 73 EVAVSRTACPAVKPEVDVSTFESLDIRVGLITDAKAVADPEMSAKRGVPTMSRKHLQLTVDIGCEERIVVSECKYVMDVEDAVGKKVLFVANVPPCEVLGITSHGMLLTGFNYDPTPMPRSFKVILPGLGRLPPGSEVKG 212
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Match: A0A2K1L6P8_PHYPA (tRNA-binding domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L6P8_PHYPA) HSP 1 Score: 108 bits (271), Expect = 1.550e-26 Identity = 65/154 (42.21%), Postives = 89/154 (57.79%), Query Frame = 1
Query: 28 PLHHREVAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPD---HGNKP--SRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTG 474
P H TA E TD PA++P+V + +E++D+RVG I A+ V D + KP SRK+L L V +G E R+I+S + V DVE+A+GK VL+VAN + G S G +L NY PMPR+ + +L G G +PPGSQV G
Sbjct: 66 PGLHIRAHTETAEVPETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGSQVKG 219
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Match: A9TWI9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TWI9_PHYPA) HSP 1 Score: 105 bits (263), Expect = 2.250e-25 Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 28 PLHHREVAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPD---HGNKP--SRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQV 468
P H TA E TD PA++P+V + +E++D+RVG I A+ V D + KP SRK+L L V +G E R+I+S + V DVE+A+GK VL+VAN + G S G +L NY PMPR+ + +L G G +PPGSQ+
Sbjct: 38 PGLHIRAHTETAEVPETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGSQL 189
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Match: A0A176WMH6_MARPO (tRNA-binding domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WMH6_MARPO) HSP 1 Score: 108 bits (271), Expect = 3.070e-25 Identity = 62/138 (44.93%), Postives = 84/138 (60.87%), Query Frame = 1
Query: 70 EEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKP-----SRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQV 468
E A PA++P+V V+++E+LDIRVG I A+ V DP+ K SRK+L L V +G E R ++S + V DVE+A+GK VL VAN +LG S G LL NY PMPR+ + +L G G +PPGS+V
Sbjct: 73 EVAVSRTACPAVKPEVDVSTFESLDIRVGLITDAKAVADPEMSAKRGVPTMSRKHLQLTVDIGCEERIVVSECKYVMDVEDAVGKKVLFVANVPPCEVLGITSHGMLLTGFNYDPTPMPRSFKVILPGLGRLPPGSEV 210
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Match: A0A1Y1HKH6_KLENI (tRNA-binding domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HKH6_KLENI) HSP 1 Score: 94.7 bits (234), Expect = 1.740e-21 Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 1
Query: 82 DSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKP-----SRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQV 468
D + P ++ + + + +DIRVG + A+ VPD + K SRK+L L V +G+E R+++S + V DVE+A+GK VL VAN + G S G +L NY PMPR+ + +L G G +PPGS +
Sbjct: 38 DRSTCPKIKEQIGFSDFAKVDIRVGLVTDAKAVPDKEMTEKRGKPTMSRKFLQLKVDIGSETRTVVSQCKYVMDVEDAVGKKVLFVANLPPTEVEGITSHGLVLQGLNYDPTPMPRSFKVILPGLGKLPPGSPI 171
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Match: A0A662TGM8_9ARCH (Methionine--tRNA ligase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A662TGM8_9ARCH) HSP 1 Score: 75.1 bits (183), Expect = 1.280e-14 Identity = 47/122 (38.52%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 103 LQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQV 468
+Q + + +E LDIRVG+I+KAE +P + K L L V +GNE R +++G+ + EE IGK ++V+ N + +VI G S+G LL AA+ + P+ +L PVPPGS+V
Sbjct: 1 MQGLIDIREFEKLDIRVGKIIKAEKIPR-------TTKLLRLEVDVGNEIRQLVAGIAEEYSPEELIGKLIVVLVNLKPKVIRGVASQGMLL-AADVNGKPV------LLTTDKPVPPGSKV 108
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Match: A0A523QCY0_9EURY (Methionine--tRNA ligase n=2 Tax=Hadesarchaea archaeon TaxID=2250276 RepID=A0A523QCY0_9EURY) HSP 1 Score: 76.6 bits (187), Expect = 2.560e-13 Identity = 48/130 (36.92%), Postives = 70/130 (53.85%), Query Frame = 1
Query: 79 TDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQV 468
TD+ P L+P S+ +E LDIR+GR+ KAE +P S+K L L + L E R+I++G+ + EE IGK V +V N E ++G S G LL A + K ++L PV PG++V
Sbjct: 489 TDNPSKP-LKPRASIKDFEKLDIRIGRVTKAEKIPG-------SKKLLKLELELAGERRTIVAGIAEHYPSEELIGKQVAIVTNLEPVKLMGVKSEGMLLAAEDEGKI-------SILTADKPVKPGAKV 603 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156554 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1083 ID=mRNA_1083|Name=jgi.p|Trimin1|156554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=480bp|location=Sequence derived from alignment at Contig_1:1069907..1071728+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAAGAAAGATCTCATGCAGTGCGGCCACTGCATCACCGTGAGGTGGCback to top protein sequence of jgi.p|Trimin1|156554 >Trimin1|156554|e_gw1.1.349.1 ID=Trimin1|156554|e_gw1.1.349.1|Name=jgi.p|Trimin1|156554|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=160bp MQERSHAVRPLHHREVAVSTALGEEATDSADVPALQPDVSVASYEALDIRback to top mRNA from alignment at Contig_1:1069907..1071728+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1083 ID=mRNA_1083|Name=jgi.p|Trimin1|156554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1822bp|location=Sequence derived from alignment at Contig_1:1069907..1071728+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_1:1069907..1071728+ >mRNA_1083 ID=mRNA_1083|Name=jgi.p|Trimin1|156554|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=480bp|location=Sequence derived from alignment at Contig_1:1069907..1071728+ (Tribonema minus UTEX_B_3156 )back to top |