mRNA_10830 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173271
Unique NamemRNA_10830
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173271 vs. uniprot
Match: A0A836CN22_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN22_9STRA)

HSP 1 Score: 595 bits (1534), Expect = 3.830e-215
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1 
Query:    1 MIDTCGPLIDRLLHINAAKLNKIIQSQAAELEKRDNLPVSTGGKRYGLVKQKPDDRDFQFVSAAKSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWGQWGQNGFFTLPYDYLTNPDLAFDFWMITGFK 876
            MIDTCGPLIDRLLHINAAKLNKIIQSQAAELEKRDNLPVSTGGKRYGLVKQKPDDRDFQFVSAAKSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWGQWGQNGFFTLPYDYLTNPDLAFDFWMITGFK
Sbjct:    1 MIDTCGPLIDRLLHINAAKLNKIIQSQAAELEKRDNLPVSTGGKRYGLVKQKPDDRDFQFVSAAKSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWGQWGQNGFFTLPYDYLTNPDLAFDFWMITGFK 292
[Close]
BLAST of jgi.p|Trimin1|173271 vs. uniprot
Match: A0A836CNX1_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNX1_9STRA)

HSP 1 Score: 474 bits (1220), Expect = 2.720e-167
Identity = 222/291 (76.29%), Postives = 258/291 (88.66%), Query Frame = 1 
Query:    1 MIDTCGPLIDRLLHINAAKLNKIIQSQAAELEKRDNLPVSTGGKRYGLVKQKPDDRDFQFVSAAKSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWGQWGQNGFFTLPYDYLTNPDLAFDFWMITGF 873
            MI+TCGP++D+LL  NAA+L K ++SQAAEL+K   LPVS+GG+RYGLVKQKPD+RD+QFV+A++ S+PAAVDLRTTG VPP +DQG AGTCSAHAA+SALRFL+RKEKLQDF PSRLF+Y+ +RVYVEGV+PSED+GCALRDV KA++TYHVCNERYM Y   KIAE PPALAVANARLHTTF YRAVQQSLSALK ALASGYPV+VG QVYESFES++VARTG VPMP++GEQCLGGHA L +G+ D TQTFTLLNSWG WGQNGFFTLPY YLT+ +LA DFW  +GF
Sbjct:    1 MIETCGPVVDKLLETNAARLKKFVESQAAELQKGGRLPVSSGGRRYGLVKQKPDNRDYQFVAASRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGLWGQNGFFTLPYAYLTDTELACDFWTASGF 291
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BLAST of jgi.p|Trimin1|173271 vs. uniprot
Match: A0A836CEQ3_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ3_9STRA)

HSP 1 Score: 419 bits (1076), Expect = 6.770e-146
Identity = 198/249 (79.52%), Postives = 223/249 (89.56%), Query Frame = 1 
Query:  133 RYGLVKQKPDDRDFQFVSAAKSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWGQ-WGQNGFFTLPYDYLTNPDLAFDFWMITGFK 876
            RYGLVKQKPDDRD+QFV+A++ S+PAAVDLRTTG+VPP MDQG AGTCSAHA +SALRFL+RKEKLQDF PSRLF+Y+ +RVYVEGV+PSED+GCALRDV KA++TYHVCNERYM Y DTKIAE PPALAVANARLHTTF YRAVQQSLSALK ALASGYPV+VGIQVY+SFE+++VARTG VPMP++GEQCLGGHAV  V F+D T+TFTL NSW   WGQ GFF L YDYLTNPDLA DFWM TGF+
Sbjct:   10 RYGLVKQKPDDRDYQFVAASRKSLPAAVDLRTTGYVPPVMDQGSAGTCSAHATASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMEYDDTKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVVVGIQVYDSFETEEVARTGVVPMPAEGEQCLGGHAVYLVAFEDATRTFTLCNSWSSAWGQGGFFKLSYDYLTNPDLACDFWMTTGFQ 258
[Close]
BLAST of jgi.p|Trimin1|173271 vs. uniprot
Match: A0A836CMZ0_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ0_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 1.190e-140
Identity = 188/291 (64.60%), Postives = 239/291 (82.13%), Query Frame = 1 
Query:    1 MIDTCGPLIDRLLHINAAKLNKIIQSQAAELEKRDNLPVSTGGKRYGLVKQKPDDRDFQFVSAAKSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWGQWGQNGFFTLPYDYLTNPDLAFDFWMITGF 873
            MI T GPLID+LL  NAA+L K  +++A + +K  +LP S GG+RYG +KQK D RD+ FV++ ++SIP  VDLR+TGF+ P ++QG AGTCSAHAA++ALR+L+RKE +QDF PSRLF+Y+T+RV +EG++P  D+GC LRDV +AL  +H CNERYM YSDT+I E PPALAVANARLHTTF YRAV+Q+LSAL+ ALA+GYPVIVGIQVY++FES++VA TG VPMPS  E+CLGGHAVL V + D+T+TFTL NSWG+WGQ+GFF+LPYDYL +  LA DFW +T F
Sbjct:    1 MISTSGPLIDKLLETNAARLEKFERTEAGDAKKPAHLPASAGGRRYGTIKQKEDSRDYSFVASFRNSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWGEWGQDGFFSLPYDYLIDTGLAGDFWCLTRF 291
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BLAST of jgi.p|Trimin1|173271 vs. uniprot
Match: A0A835Z842_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z842_9STRA)

HSP 1 Score: 326 bits (835), Expect = 7.440e-109
Identity = 159/272 (58.46%), Postives = 207/272 (76.10%), Query Frame = 1 
Query:   76 SQAAELEKRDNLPVSTG---GKRYGLVKQKPDDRDFQFVSAAK-SSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWG-QWGQNGFFTLPYDYLTNPDLAFDFWMITGFK 876
            ++  E+ + D   + TG   G+++ L +Q  D RD  F S  K +++P AVDLR TGF+PP +DQGQAGTCSAHA+++AL +L+R+EK+ DF P+RL+IY+T+RVYVEG+  S+D+GC LRDV KA+  YHV +ER+ PYSD KI+E P A+AVANARLH T  Y AV Q+  ALK ALA+ YPV++GIQV+ESFESD VA+TG VPMP +GEQCLGGHAV  VG+ D T+TFTL+NSW  QWG +GFFTLPY+Y+ + +LA DFW    FK
Sbjct:   13 AKPVEIAEDDAPALRTGPLTGRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLFK 284
[Close]
BLAST of jgi.p|Trimin1|173271 vs. uniprot
Match: A0A836CBQ3_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ3_9STRA)

HSP 1 Score: 325 bits (834), Expect = 2.720e-108
Identity = 152/252 (60.32%), Postives = 196/252 (77.78%), Query Frame = 1 
Query:  127 GKRYGLVKQKPDDRDFQFVSAAKSS-IPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWG-QWGQNGFFTLPYDYLTNPDLAFDFWMITGFK 876
            G++Y L  Q+PD RD  F S    + +P +VDLRT+GF+PP +DQ  AGTCSAHA+++AL +L+++EK+ DF P+RL+IY+T+RVYVEG   +ED+GC LRDV KA+ TYHV +E+Y PYSD KI++ P A+AVANARLHTT  YRAV Q+   LK ALA+G+PV++GIQVYESFESD+VA TG VPMP DGE+CLG HA LC+GF D T+ F L+NSWG  +G  GFFTLPY+Y+ +P+LA DFW    FK
Sbjct:   61 GRKYTLRLQEPDSRDLVFTSTINGADMPLSVDLRTSGFMPPVLDQQSAGTCSAHASANALHYLLKREKVADFSPARLYIYYTTRVYVEGTPATEDSGCVLRDVGKAIKTYHVPDEKYEPYSDKKISQRPSAMAVANARLHTTLKYRAVAQTEHDLKGALAAGFPVMIGIQVYESFESDEVAATGEVPMPEDGEECLGAHATLCIGFDDATRKFKLMNSWGVAFGDKGFFTLPYEYVLDPNLASDFWTFKVFK 312
[Close]
BLAST of jgi.p|Trimin1|173271 vs. uniprot
Match: A0A835YYL4_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYL4_9STRA)

HSP 1 Score: 323 bits (828), Expect = 1.130e-107
Identity = 156/260 (60.00%), Postives = 197/260 (75.77%), Query Frame = 1 
Query:  103 DNLPVSTGGKRYGLVKQKPDDRDFQFVSAAK-SSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWG-QWGQNGFFTLPYDYLTNPDLAFDFWMITGFK 876
            D    +   +++ L +Q  D RD  F S  K +++P AVDLR TGF+PP +DQGQAGTCSAHA+++AL +L+R+EK+ DF P+RL+IY+T+RVYVEG    +D+GC LRDV KA+  YHV +ERY PYSD KI+E P A+AVANARLH T  Y AV Q+  ALK ALA+ YPV++GIQV+ESFESD VA+TG VPMP +GEQCLGGHAV  VG+ D T+TFTL+NSW  QWG +GFFTLPY+Y+ +P LA DFW    FK
Sbjct:   33 DIKSTTFSSRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGTPAFDDSGCVLRDVCKAIKKYHVPDERYEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDKVAQTGVVPMPQEGEQCLGGHAVDVVGYDDVTRTFTLMNSWSTQWGDSGFFTLPYEYVLDPSLASDFWTFQLFK 292
[Close]
BLAST of jgi.p|Trimin1|173271 vs. uniprot
Match: A0A835ZGP7_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP7_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.410e-88
Identity = 128/208 (61.54%), Postives = 156/208 (75.00%), Query Frame = 1 
Query:  256 QGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWGQ-WGQNGFFTLPYDYLTNPDLAFDFWMITGFK 876
            QG+AGTCSAHAA++ L +L+RKE + DF PSRLFIY+T+RVYVEG   +ED+GC LRDV KA++ YH  +E+Y PYSD +IA+ P ALAVANAR H    YRAV Q+ + LK ALA+GYPV+VGIQVY  FESD+VARTG   +P   E CLGGHAV+   + D  + FTL+NSW   WG+ GFFTLPYDYL +P LA DFW  T FK
Sbjct:    1 QGRAGTCSAHAAANCLHYLLRKEGVADFPPSRLFIYYTARVYVEGTPATEDSGCVLRDVCKAVARYHAPDEKYEPYSDARIAQRPSALAVANARKHCALQYRAVPQTEADLKGALAAGYPVMVGIQVYAGFESDEVARTGEAQLPGPDEACLGGHAVVLTAYDDSLRRFTLMNSWSSAWGRGGFFTLPYDYLLDPQLAGDFWCFTAFK 208
[Close]
BLAST of jgi.p|Trimin1|173271 vs. uniprot
Match: A0A836CDY1_9STRA (Pept_C1 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY1_9STRA)

HSP 1 Score: 228 bits (581), Expect = 8.510e-71
Identity = 126/244 (51.64%), Postives = 157/244 (64.34%), Query Frame = 1 
Query:  142 LVKQKPDD-RDFQF-VSAAKSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWGQWGQNGFFTLPYDYLTNPDLAFDFWMIT 867
            LVK  P+D RDF+F      S++P +VDL  T  +PPA+DQG+ G+C+A+A S ALR+L +K+  QD+ PSRL +Y+ +RVY+ G  P EDTGC LRD+ KA+S Y +  E Y  Y  +K A  PP L            YRAV +   +LKSALA    VIVGI VYESF +  VA TG VPMP  GE CLGGHA L  GF   T T+TL NSWG WG+ G FTLP  YLTNP L FD W+++
Sbjct:   11 LVKPSPEDTRDFKFKAKTTYSNLPTSVDL--TLLLPPALDQGELGSCAANAGSVALRYLYKKQIAQDWLPSRLALYYVTRVYMTGDTPDEDTGCYLRDLCKAMSRYQLPPEIYWRYDISKFALPPPFLQADEVASAPLVEYRAVNRDEFSLKSALAERNMVIVGIAVYESFMTPLVASTGVVPMPKPGELCLGGHACLLTGF--TTSTWTLRNSWGMWGKKGNFTLPVAYLTNPHLCFDAWVLS 250
[Close]
BLAST of jgi.p|Trimin1|173271 vs. uniprot
Match: UPI001CBCA5C3 (C1 family peptidase n=1 Tax=Myxococcus sp. XM-1-1-1 TaxID=2874602 RepID=UPI001CBCA5C3)

HSP 1 Score: 223 bits (568), Expect = 8.310e-69
Identity = 117/252 (46.43%), Postives = 155/252 (61.51%), Query Frame = 1 
Query:  130 KRYGLVKQKPDDRDFQFVSAA--KSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWG-QWGQNGFFTLPYDYLTNPDLAFDFWMITGFK 876
            K+YG +   PD RDF + +    +S++PA VDL  T   PP  DQGQ G+C+A+A + A+ F  + EKL +F PSRLFIYF  R  +EG   + D+G  +RD +K+++    C E   PY     AE PP  A  NA+ H   +Y+ + Q L+ LK  LASGYP + G  VYESFES +V RTG +PMP   EQ +GGHAVL VG+ D+ + F + NSWG  WG +G+F +PY YLTN  LA D W I   K
Sbjct:   10 KKYGWIPDLPDQRDFLYAAPTPIQSNLPAKVDL--TPQCPPVYDQGQLGSCTANAIAGAIEFDQKMEKLTEFIPSRLFIYFNERT-IEGTV-NIDSGAMIRDGIKSVANLGACPESDWPYDINNFAEKPPQAAFTNAKQHLVVLYQRLIQELNTLKGCLASGYPFVFGFTVYESFESPEVERTGIMPMPRSSEQPVGGHAVLAVGYDDEARQFIVRNSWGPNWGLDGYFRMPYAYLTNSRLASDLWTIRSTK 257
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173271 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CN22_9STRA3.830e-215100.00Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CNX1_9STRA2.720e-16776.29Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CEQ3_9STRA6.770e-14679.52Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CMZ0_9STRA1.190e-14064.60Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835Z842_9STRA7.440e-10958.46Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CBQ3_9STRA2.720e-10860.32Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835YYL4_9STRA1.130e-10760.00Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835ZGP7_9STRA1.410e-8861.54Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CDY1_9STRA8.510e-7151.64Pept_C1 domain-containing protein n=2 Tax=Tribonem... [more]
UPI001CBCA5C38.310e-6946.43C1 family peptidase n=1 Tax=Myxococcus sp. XM-1-1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:500213..501091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173271|e_gw1.101.96.1
DescriptionPapain cysteine protease family protein
COG categoryO
Max annot lvl1236|Gammaproteobacteria
EggNOG OGsCOG4870@1|root,COG4870@2|Bacteria,1MV6S@1224|Proteobacteria,1S02V@1236|Gammaproteobacteria,1Z6BR@136849|Pseudomonas syringae group
Evalue6.87e-64
Seed ortholog629265.PMA4326_07916
Hectar predicted targeting categoryother localisation
TranscriptId173593
TrackFilteredModels1
ProteinId173271
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173271gene_10830Tribonema minus UTEX_B_3156 geneContig_101 500213..501091 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10830_1exon_10830_1Tribonema minus UTEX_B_3156 exonContig_101 500213..501091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10830CDS_10830Tribonema minus UTEX_B_3156 CDSContig_101 500213..501091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173271Trimin1|173271|e_gw1.101.96.1Tribonema minus UTEX_B_3156 polypeptideContig_101 500213..501091 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10830 ID=mRNA_10830|Name=jgi.p|Trimin1|173271|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_101:500213..501091- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGACACGTGCGGTCCTCTCATCGACCGGCTGCTGCATATAAACGC
CGCGAAGCTGAATAAGATCATCCAATCGCAAGCCGCTGAGCTGGAGAAGC
GCGATAATCTGCCAGTGTCCACAGGCGGAAAGCGTTACGGCTTGGTCAAG
CAAAAGCCGGATGACAGGGATTTTCAATTCGTTTCGGCAGCCAAGAGCTC
GATCCCTGCTGCCGTTGACCTGCGCACCACGGGGTTCGTGCCGCCGGCAA
TGGACCAAGGCCAAGCGGGTACTTGTAGTGCCCACGCAGCGTCCAGCGCG
CTGAGATTCCTCATTCGAAAAGAGAAGCTTCAAGACTTTCAGCCCTCCAG
ACTCTTCATATACTTTACATCTCGTGTCTACGTGGAGGGCGTCGCACCCT
CTGAAGACACCGGGTGTGCTCTGCGGGATGTGGTGAAGGCTCTGTCTACC
TACCACGTGTGCAATGAGCGATACATGCCGTATTCAGACACGAAGATCGC
CGAACATCCGCCCGCTCTGGCAGTGGCGAATGCGCGCCTGCACACTACCT
TCATGTATCGGGCCGTGCAGCAGTCGCTGAGCGCACTCAAGAGCGCTCTT
GCATCCGGTTACCCTGTCATTGTCGGCATCCAAGTATACGAAAGCTTCGA
GTCTGATGACGTGGCGCGCACAGGAAACGTCCCCATGCCTTCCGACGGTG
AGCAATGTCTGGGCGGCCATGCCGTTTTGTGTGTTGGATTCCAAGATAAA
ACTCAAACATTTACCCTTTTGAACAGTTGGGGACAATGGGGGCAAAATGG
GTTCTTCACGCTGCCGTATGACTACCTGACAAACCCAGATCTCGCCTTTG
ACTTTTGGATGATCACGGGCTTCAAGTGA
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protein sequence of jgi.p|Trimin1|173271

>Trimin1|173271|e_gw1.101.96.1 ID=Trimin1|173271|e_gw1.101.96.1|Name=jgi.p|Trimin1|173271|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=293bp
MIDTCGPLIDRLLHINAAKLNKIIQSQAAELEKRDNLPVSTGGKRYGLVK
QKPDDRDFQFVSAAKSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSA
LRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALST
YHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSAL
ASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDK
TQTFTLLNSWGQWGQNGFFTLPYDYLTNPDLAFDFWMITGFK*
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mRNA from alignment at Contig_101:500213..501091-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10830 ID=mRNA_10830|Name=jgi.p|Trimin1|173271|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_101:500213..501091- (Tribonema minus UTEX_B_3156 )
ATGATCGACACGTGCGGTCCTCTCATCGACCGGCTGCTGCATATAAACGC
CGCGAAGCTGAATAAGATCATCCAATCGCAAGCCGCTGAGCTGGAGAAGC
GCGATAATCTGCCAGTGTCCACAGGCGGAAAGCGTTACGGCTTGGTCAAG
CAAAAGCCGGATGACAGGGATTTTCAATTCGTTTCGGCAGCCAAGAGCTC
GATCCCTGCTGCCGTTGACCTGCGCACCACGGGGTTCGTGCCGCCGGCAA
TGGACCAAGGCCAAGCGGGTACTTGTAGTGCCCACGCAGCGTCCAGCGCG
CTGAGATTCCTCATTCGAAAAGAGAAGCTTCAAGACTTTCAGCCCTCCAG
ACTCTTCATATACTTTACATCTCGTGTCTACGTGGAGGGCGTCGCACCCT
CTGAAGACACCGGGTGTGCTCTGCGGGATGTGGTGAAGGCTCTGTCTACC
TACCACGTGTGCAATGAGCGATACATGCCGTATTCAGACACGAAGATCGC
CGAACATCCGCCCGCTCTGGCAGTGGCGAATGCGCGCCTGCACACTACCT
TCATGTATCGGGCCGTGCAGCAGTCGCTGAGCGCACTCAAGAGCGCTCTT
GCATCCGGTTACCCTGTCATTGTCGGCATCCAAGTATACGAAAGCTTCGA
GTCTGATGACGTGGCGCGCACAGGAAACGTCCCCATGCCTTCCGACGGTG
AGCAATGTCTGGGCGGCCATGCCGTTTTGTGTGTTGGATTCCAAGATAAA
ACTCAAACATTTACCCTTTTGAACAGTTGGGGACAATGGGGGCAAAATGG
GTTCTTCACGCTGCCGTATGACTACCTGACAAACCCAGATCTCGCCTTTG
ACTTTTGGATGATCACGGGCTTCAAGTGA
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Coding sequence (CDS) from alignment at Contig_101:500213..501091-

>mRNA_10830 ID=mRNA_10830|Name=jgi.p|Trimin1|173271|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=879bp|location=Sequence derived from alignment at Contig_101:500213..501091- (Tribonema minus UTEX_B_3156 )
ATGATCGACACGTGCGGTCCTCTCATCGACCGGCTGCTGCATATAAACGC
CGCGAAGCTGAATAAGATCATCCAATCGCAAGCCGCTGAGCTGGAGAAGC
GCGATAATCTGCCAGTGTCCACAGGCGGAAAGCGTTACGGCTTGGTCAAG
CAAAAGCCGGATGACAGGGATTTTCAATTCGTTTCGGCAGCCAAGAGCTC
GATCCCTGCTGCCGTTGACCTGCGCACCACGGGGTTCGTGCCGCCGGCAA
TGGACCAAGGCCAAGCGGGTACTTGTAGTGCCCACGCAGCGTCCAGCGCG
CTGAGATTCCTCATTCGAAAAGAGAAGCTTCAAGACTTTCAGCCCTCCAG
ACTCTTCATATACTTTACATCTCGTGTCTACGTGGAGGGCGTCGCACCCT
CTGAAGACACCGGGTGTGCTCTGCGGGATGTGGTGAAGGCTCTGTCTACC
TACCACGTGTGCAATGAGCGATACATGCCGTATTCAGACACGAAGATCGC
CGAACATCCGCCCGCTCTGGCAGTGGCGAATGCGCGCCTGCACACTACCT
TCATGTATCGGGCCGTGCAGCAGTCGCTGAGCGCACTCAAGAGCGCTCTT
GCATCCGGTTACCCTGTCATTGTCGGCATCCAAGTATACGAAAGCTTCGA
GTCTGATGACGTGGCGCGCACAGGAAACGTCCCCATGCCTTCCGACGGTG
AGCAATGTCTGGGCGGCCATGCCGTTTTGTGTGTTGGATTCCAAGATAAA
ACTCAAACATTTACCCTTTTGAACAGTTGGGGACAATGGGGGCAAAATGG
GTTCTTCACGCTGCCGTATGACTACCTGACAAACCCAGATCTCGCCTTTG
ACTTTTGGATGATCACGGGCTTCAAGTGA
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