mRNA_10828 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173310
Unique NamemRNA_10828
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173310 vs. uniprot
Match: A0A836CPB0_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPB0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.380e-38
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MVKRQAKACPVSDCNKPAARKWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC 207
            MVKRQAKACPVSDCNKPAARKWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC
Sbjct:    1 MVKRQAKACPVSDCNKPAARKWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC 69
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BLAST of jgi.p|Trimin1|173310 vs. uniprot
Match: A0A835ZAP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.480e-16
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   10 RQAKACPVSDCNKPAARKWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC 207
            + A+ CPV DC KPA RKWC++H+    C+ +GC K+ +Y I G GAQ+C  H EEGMED+++KRC
Sbjct:   50 KPARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRC 115
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BLAST of jgi.p|Trimin1|173310 vs. uniprot
Match: A0A835ZBE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBE1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.920e-15
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   16 AKACPVSDCNKPAARKWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC 207
            AK C V  C+ PA RKWC EHKR   C+  GC+K P YNIPGA AQ+C+ H    M+D+ HKRC
Sbjct:  325 AKQCAVKGCSNPAKRKWCGEHKRFQVCRHQGCSKAPIYNIPGAAAQWCREHKTGDMQDVAHKRC 388
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BLAST of jgi.p|Trimin1|173310 vs. uniprot
Match: A0A835Z3T1_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.550e-12
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   16 AKACPVSDCNKPAARKWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC 207
            AK C V  C  PA  KWC++H+    C+ +GC K+ +Y I GAGAQ C  H EEGME+++ KRC
Sbjct:   35 AKKCLVPGCGNPAKHKWCEDHRYYKICRAEGCEKRSAYGITGAGAQRCITHNEEGMENVISKRC 98
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BLAST of jgi.p|Trimin1|173310 vs. uniprot
Match: A0A836CEU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.320e-11
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   19 KACPVSDCNKPAARKWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC 207
            K C    C + A RKWC EHK+  ECK+  C K+P+YN+P AGAQ+CK H  +GM D+ ++ C
Sbjct:    9 KECAFLGCPRNAPRKWCPEHKQHRECKEPSCTKQPTYNLPDAGAQWCKAHKGQGMVDVSNRHC 71
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BLAST of jgi.p|Trimin1|173310 vs. uniprot
Match: A0A835YX16_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX16_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.180e-9
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   61 KWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC 207
            KWCD+H+   +C+++GC+K+PS+N+ GAGAQ+C  H   GM DI   RC
Sbjct:    2 KWCDDHRSYAKCRREGCDKQPSFNVRGAGAQWCSEHKSPGMIDITSARC 50
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173310 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CPB0_9STRA3.380e-38100.00EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A835ZAP8_9STRA2.480e-1653.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBE1_9STRA1.920e-1556.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3T1_9STRA7.550e-1250.00EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A836CEU2_9STRA1.320e-1149.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX16_9STRA7.180e-951.02Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:497215..498714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173310|e_gw1.101.131.1
Hectar predicted targeting categoryother localisation
TranscriptId173632
TrackFilteredModels1
ProteinId173310
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173310gene_10828Tribonema minus UTEX_B_3156 geneContig_101 497215..498714 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10828_1exon_10828_1Tribonema minus UTEX_B_3156 exonContig_101 497215..498714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10828CDS_10828Tribonema minus UTEX_B_3156 CDSContig_101 497215..498714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173310Trimin1|173310|e_gw1.101.131.1Tribonema minus UTEX_B_3156 polypeptideContig_101 497215..498714 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10828 ID=mRNA_10828|Name=jgi.p|Trimin1|173310|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1500bp|location=Sequence derived from alignment at Contig_101:497215..498714- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAAGAGACAGGCTAAGGCATGCCCCGTCAGCGACTGTAACAAGCC
CGCGGCGAGGAAGTGGTGTGACGAACACAAGAGACTCGATGAGTGCAAGA
AAGATGGCTGTAATAAGAAACCATCATACAACATCCCTGGAGCTGGTGCG
CAGTATTGTAAGAACCACGCCGAGGAGGGAATGGAGGACATTGTTCACAA
GAGATGCGAGCATCCTTCGTGCAAGACGCAACCGAGCTACGGATTTGAGT
TGGGCAAGGCGACACACTGTGCCGATCACGCCGAGGATGGAATGGAGAAC
GTCGTCAGCAAGCGATGCGAGCATCCTTCGTGCAGGATCATTCCGAGCTA
CGGATTTGAGTGGGGCAAGGCCACACATTGCGCCACGCACGCCGAGGAAG
GCATGGAGAACGTCATCAGCAAGAGATGCGAGCATGCTTCGTGCGACATC
CGCCCCAGCTACGGATTCGAGTGGGGCAAGGCGACGCATTGTGCCGATCA
CGCCGAGGAAGGCATGGAGAACGTCATGGCCAAACGATGCGAGCATCCTT
CGTGCGATACCCGTCCGAGCTACGGATTCGAGTGGGGCAAGGCCACACAT
TGCGCCACGCACGCCGAGGAAGGCATGGATAACGTCATTGACAAACGATG
CGAGCATCCTTCATGCGATATCCACCCGAGCTACGGATTCGAGTGGGGCA
AGGCGACGCATTGTGCCGATCACGCCGAGGAAGGCATGGAGAACGTCATG
GCCAAACGATGCGAGCATCCTTCGTGCGATACCCGTCCGAGCTACGGATT
CGAGTGGGGCAAGGCGACGCATTGCGCCACTCACGCCGAGGAAGGCATGG
AGGACGTCGTCAACAAGCGATGCGAGCATCCTCCGTGCATGACCCATCCA
AGCTACGGATTCGAGTGGGGAAAGCCCACGCATTGCTCGGAGCACGCTGA
GGAGGGAATGGAGAACGTGGTCAGCAAGCGATGCGATCATCCTTCGTGCG
ATGCTCGCCCGAGCTACGGCCTCGAATTGGGCAAGGCGACGCACTGCGCC
ACTCACGCCGAGGAAGGCATGGAGGACGTGATCAACAAGCGATGCGACCA
TCCTTCGTGCAAGACTCAACCGAGCTACGACCTCGAGTGGGGCAAAGCGA
CTCATTGCGCCACGCACGCCGAGGAAGGAATGGAGGACGTCGTTCACCAG
CGATGCGAGCATCCTTCGTGCAGGATCATACCAAGCTACGGATTCGAGTG
GGGCAAGGCGACACACTGCGCCACGCACGCCGAGGAGGGAATGGAGGACG
TAATCAACAAGCGATGTGAGCATGGCAGACTTATCGCAAACTGCCTCGGC
GATGCGTGTGGCAAGAAGATCGCTGGCCATTCGGAGGAGGAGCTCTTCAC
TAACGCGGCGGCCTGGATTGCGTGGGGAGAGTCATCGGACGCAGTCGCCA
GCTTCCTGAGCAAGAGGCAGCGGCAGCGGCAGCGGCAGCGTTGGCGGTAG
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protein sequence of jgi.p|Trimin1|173310

>Trimin1|173310|e_gw1.101.131.1 ID=Trimin1|173310|e_gw1.101.131.1|Name=jgi.p|Trimin1|173310|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=500bp
MVKRQAKACPVSDCNKPAARKWCDEHKRLDECKKDGCNKKPSYNIPGAGA
QYCKNHAEEGMEDIVHKRCEHPSCKTQPSYGFELGKATHCADHAEDGMEN
VVSKRCEHPSCRIIPSYGFEWGKATHCATHAEEGMENVISKRCEHASCDI
RPSYGFEWGKATHCADHAEEGMENVMAKRCEHPSCDTRPSYGFEWGKATH
CATHAEEGMDNVIDKRCEHPSCDIHPSYGFEWGKATHCADHAEEGMENVM
AKRCEHPSCDTRPSYGFEWGKATHCATHAEEGMEDVVNKRCEHPPCMTHP
SYGFEWGKPTHCSEHAEEGMENVVSKRCDHPSCDARPSYGLELGKATHCA
THAEEGMEDVINKRCDHPSCKTQPSYDLEWGKATHCATHAEEGMEDVVHQ
RCEHPSCRIIPSYGFEWGKATHCATHAEEGMEDVINKRCEHGRLIANCLG
DACGKKIAGHSEEELFTNAAAWIAWGESSDAVASFLSKRQRQRQRQRWR*
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mRNA from alignment at Contig_101:497215..498714-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10828 ID=mRNA_10828|Name=jgi.p|Trimin1|173310|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1500bp|location=Sequence derived from alignment at Contig_101:497215..498714- (Tribonema minus UTEX_B_3156 )
ATGGTTAAGAGACAGGCTAAGGCATGCCCCGTCAGCGACTGTAACAAGCC
CGCGGCGAGGAAGTGGTGTGACGAACACAAGAGACTCGATGAGTGCAAGA
AAGATGGCTGTAATAAGAAACCATCATACAACATCCCTGGAGCTGGTGCG
CAGTATTGTAAGAACCACGCCGAGGAGGGAATGGAGGACATTGTTCACAA
GAGATGCGAGCATCCTTCGTGCAAGACGCAACCGAGCTACGGATTTGAGT
TGGGCAAGGCGACACACTGTGCCGATCACGCCGAGGATGGAATGGAGAAC
GTCGTCAGCAAGCGATGCGAGCATCCTTCGTGCAGGATCATTCCGAGCTA
CGGATTTGAGTGGGGCAAGGCCACACATTGCGCCACGCACGCCGAGGAAG
GCATGGAGAACGTCATCAGCAAGAGATGCGAGCATGCTTCGTGCGACATC
CGCCCCAGCTACGGATTCGAGTGGGGCAAGGCGACGCATTGTGCCGATCA
CGCCGAGGAAGGCATGGAGAACGTCATGGCCAAACGATGCGAGCATCCTT
CGTGCGATACCCGTCCGAGCTACGGATTCGAGTGGGGCAAGGCCACACAT
TGCGCCACGCACGCCGAGGAAGGCATGGATAACGTCATTGACAAACGATG
CGAGCATCCTTCATGCGATATCCACCCGAGCTACGGATTCGAGTGGGGCA
AGGCGACGCATTGTGCCGATCACGCCGAGGAAGGCATGGAGAACGTCATG
GCCAAACGATGCGAGCATCCTTCGTGCGATACCCGTCCGAGCTACGGATT
CGAGTGGGGCAAGGCGACGCATTGCGCCACTCACGCCGAGGAAGGCATGG
AGGACGTCGTCAACAAGCGATGCGAGCATCCTCCGTGCATGACCCATCCA
AGCTACGGATTCGAGTGGGGAAAGCCCACGCATTGCTCGGAGCACGCTGA
GGAGGGAATGGAGAACGTGGTCAGCAAGCGATGCGATCATCCTTCGTGCG
ATGCTCGCCCGAGCTACGGCCTCGAATTGGGCAAGGCGACGCACTGCGCC
ACTCACGCCGAGGAAGGCATGGAGGACGTGATCAACAAGCGATGCGACCA
TCCTTCGTGCAAGACTCAACCGAGCTACGACCTCGAGTGGGGCAAAGCGA
CTCATTGCGCCACGCACGCCGAGGAAGGAATGGAGGACGTCGTTCACCAG
CGATGCGAGCATCCTTCGTGCAGGATCATACCAAGCTACGGATTCGAGTG
GGGCAAGGCGACACACTGCGCCACGCACGCCGAGGAGGGAATGGAGGACG
TAATCAACAAGCGATGTGAGCATGGCAGACTTATCGCAAACTGCCTCGGC
GATGCGTGTGGCAAGAAGATCGCTGGCCATTCGGAGGAGGAGCTCTTCAC
TAACGCGGCGGCCTGGATTGCGTGGGGAGAGTCATCGGACGCAGTCGCCA
GCTTCCTGAGCAAGAGGCAGCGGCAGCGGCAGCGGCAGCGTTGGCGGTAG
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Coding sequence (CDS) from alignment at Contig_101:497215..498714-

>mRNA_10828 ID=mRNA_10828|Name=jgi.p|Trimin1|173310|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1500bp|location=Sequence derived from alignment at Contig_101:497215..498714- (Tribonema minus UTEX_B_3156 )
ATGGTTAAGAGACAGGCTAAGGCATGCCCCGTCAGCGACTGTAACAAGCC
CGCGGCGAGGAAGTGGTGTGACGAACACAAGAGACTCGATGAGTGCAAGA
AAGATGGCTGTAATAAGAAACCATCATACAACATCCCTGGAGCTGGTGCG
CAGTATTGTAAGAACCACGCCGAGGAGGGAATGGAGGACATTGTTCACAA
GAGATGCGAGCATCCTTCGTGCAAGACGCAACCGAGCTACGGATTTGAGT
TGGGCAAGGCGACACACTGTGCCGATCACGCCGAGGATGGAATGGAGAAC
GTCGTCAGCAAGCGATGCGAGCATCCTTCGTGCAGGATCATTCCGAGCTA
CGGATTTGAGTGGGGCAAGGCCACACATTGCGCCACGCACGCCGAGGAAG
GCATGGAGAACGTCATCAGCAAGAGATGCGAGCATGCTTCGTGCGACATC
CGCCCCAGCTACGGATTCGAGTGGGGCAAGGCGACGCATTGTGCCGATCA
CGCCGAGGAAGGCATGGAGAACGTCATGGCCAAACGATGCGAGCATCCTT
CGTGCGATACCCGTCCGAGCTACGGATTCGAGTGGGGCAAGGCCACACAT
TGCGCCACGCACGCCGAGGAAGGCATGGATAACGTCATTGACAAACGATG
CGAGCATCCTTCATGCGATATCCACCCGAGCTACGGATTCGAGTGGGGCA
AGGCGACGCATTGTGCCGATCACGCCGAGGAAGGCATGGAGAACGTCATG
GCCAAACGATGCGAGCATCCTTCGTGCGATACCCGTCCGAGCTACGGATT
CGAGTGGGGCAAGGCGACGCATTGCGCCACTCACGCCGAGGAAGGCATGG
AGGACGTCGTCAACAAGCGATGCGAGCATCCTCCGTGCATGACCCATCCA
AGCTACGGATTCGAGTGGGGAAAGCCCACGCATTGCTCGGAGCACGCTGA
GGAGGGAATGGAGAACGTGGTCAGCAAGCGATGCGATCATCCTTCGTGCG
ATGCTCGCCCGAGCTACGGCCTCGAATTGGGCAAGGCGACGCACTGCGCC
ACTCACGCCGAGGAAGGCATGGAGGACGTGATCAACAAGCGATGCGACCA
TCCTTCGTGCAAGACTCAACCGAGCTACGACCTCGAGTGGGGCAAAGCGA
CTCATTGCGCCACGCACGCCGAGGAAGGAATGGAGGACGTCGTTCACCAG
CGATGCGAGCATCCTTCGTGCAGGATCATACCAAGCTACGGATTCGAGTG
GGGCAAGGCGACACACTGCGCCACGCACGCCGAGGAGGGAATGGAGGACG
TAATCAACAAGCGATGTGAGCATGGCAGACTTATCGCAAACTGCCTCGGC
GATGCGTGTGGCAAGAAGATCGCTGGCCATTCGGAGGAGGAGCTCTTCAC
TAACGCGGCGGCCTGGATTGCGTGGGGAGAGTCATCGGACGCAGTCGCCA
GCTTCCTGAGCAAGAGGCAGCGGCAGCGGCAGCGGCAGCGTTGGCGGTAG
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