mRNA_10806 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|173268
Unique Name	mRNA_10806
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|173268 vs. uniprot
Match: A0A835ZPM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPM5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.550e-5
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1

Query:    1 MQELPDLMGDLSSLLRLELCHCELLANL 84
            MQELPDLMGDLSSLLRLELCHCELLANL
Sbjct:    1 MQELPDLMGDLSSLLRLELCHCELLANL 28

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|173268 vs. uniprot

BLAST of jgi.p|Trimin1|173268 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZPM5_9STRA	1.550e-5	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_101	contig	Contig_101:292040..293029 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|173268\|e_gw1.101.25.1
Hectar predicted targeting category	other localisation
TranscriptId	173590
Track	FilteredModels1
ProteinId	173268

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|173268	gene_10806	Tribonema minus UTEX_B_3156	gene	Contig_101 292040..293029 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10806_1	exon_10806_1	Tribonema minus UTEX_B_3156	exon	Contig_101 292040..293029 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10806	CDS_10806	Tribonema minus UTEX_B_3156	CDS	Contig_101 292040..293029 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|173268	Trimin1\|173268\|e_gw1.101.25.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_101 292040..293029 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_101:292040..293029-
coding sequence from alignment at Contig_101:292040..293029-

spliced messenger RNA

>mRNA_10806 ID=mRNA_10806|Name=jgi.p|Trimin1|173268|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_101:292040..293029- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGAACTGCCAGACTTGATGGGAGACTTGTCGTCGCTGCTCAGGCT
TGAGCTCTGCCATTGCGAGCTGCTCGCTAACCTGCCTAACAGCATTTGCA
GCTTGACGACGCTGACGGCGCTCGATCTTGAGGACTGTGCGCAACTCACT
GCTCTGCCAGACAGTATCGGTCAATTGCGCGCATTGACGTCACTCAGACT
GACCAGGTGTGAGCAGCTTGTCAGCCTGCCAGACAGCGTAGGCGACCTGA
CGGCGCTCAAGCAGTTGGAGTTGCGGCATTTCAACGCACTTCAGACGCTG
CCGAGTAGCATCGGCCGTCTTGCTGCATTGACAGTGCTCAGATTCCACCA
TAGTGTCAGCCTTGAGAGCCTCCCAGACAGCATTGACGCCCTGGCTGCTT
TGACGACGCTCAAGCTCAGCTGCAACAGGGCGCTCACGGGTTTGCCCGAC
AGCATTGTCAATCTGGTCACAGTGACAAAGCTCGACCTGCGCATCTGCCG
TCAGCTGGCGAGCTTACCGGAGTCCATAGGCAAGATGACAGCTCTGTCTC
AGCTTCTACTTGGACGCTGCAGTCATCTCCAGCAGCTGCCGGAGAGCATT
GGGGAGCTGCAGGCCTTAGAGCTGCTTGACTTAGATCAGTGCAGCGCGCT
GACGTGCCTGCCGCAGTCCATCGGCAACATGTCGGCACTCAAATCCCTCA
GCTTGCCTGAGTGTACGCAGCTCACGGCTCTGCCTGACTCGATTGGCAAC
CTCAAGTCACTACGAAATCTCAATTTGAGGGAATGCACAGCGCTGTCGTG
CCTGCCCGACTCAATGGGCCACCTGGGGGCGCTGGTGTGTCTCAACCTGA
GGTACTGCAGCGGGCTTGTCAGCTTGCCGACAACAATCGGCCAGCTGGCG
CCGCCGCAGTATCTTGACGTCGACGGATGTTGTGAGCTCGTGAGACAGTC
CGCCGCAGCATTAGTACTTGCAAACCCAAGCGGAGCCTGA

protein sequence of jgi.p|Trimin1|173268

>Trimin1|173268|e_gw1.101.25.1 ID=Trimin1|173268|e_gw1.101.25.1|Name=jgi.p|Trimin1|173268|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=330bp
MQELPDLMGDLSSLLRLELCHCELLANLPNSICSLTTLTALDLEDCAQLT
ALPDSIGQLRALTSLRLTRCEQLVSLPDSVGDLTALKQLELRHFNALQTL
PSSIGRLAALTVLRFHHSVSLESLPDSIDALAALTTLKLSCNRALTGLPD
SIVNLVTVTKLDLRICRQLASLPESIGKMTALSQLLLGRCSHLQQLPESI
GELQALELLDLDQCSALTCLPQSIGNMSALKSLSLPECTQLTALPDSIGN
LKSLRNLNLRECTALSCLPDSMGHLGALVCLNLRYCSGLVSLPTTIGQLA
PPQYLDVDGCCELVRQSAAALVLANPSGA*

mRNA from alignment at Contig_101:292040..293029-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10806 ID=mRNA_10806|Name=jgi.p|Trimin1|173268|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_101:292040..293029- (Tribonema minus UTEX_B_3156 )
ATGCAAGAACTGCCAGACTTGATGGGAGACTTGTCGTCGCTGCTCAGGCT
TGAGCTCTGCCATTGCGAGCTGCTCGCTAACCTGCCTAACAGCATTTGCA
GCTTGACGACGCTGACGGCGCTCGATCTTGAGGACTGTGCGCAACTCACT
GCTCTGCCAGACAGTATCGGTCAATTGCGCGCATTGACGTCACTCAGACT
GACCAGGTGTGAGCAGCTTGTCAGCCTGCCAGACAGCGTAGGCGACCTGA
CGGCGCTCAAGCAGTTGGAGTTGCGGCATTTCAACGCACTTCAGACGCTG
CCGAGTAGCATCGGCCGTCTTGCTGCATTGACAGTGCTCAGATTCCACCA
TAGTGTCAGCCTTGAGAGCCTCCCAGACAGCATTGACGCCCTGGCTGCTT
TGACGACGCTCAAGCTCAGCTGCAACAGGGCGCTCACGGGTTTGCCCGAC
AGCATTGTCAATCTGGTCACAGTGACAAAGCTCGACCTGCGCATCTGCCG
TCAGCTGGCGAGCTTACCGGAGTCCATAGGCAAGATGACAGCTCTGTCTC
AGCTTCTACTTGGACGCTGCAGTCATCTCCAGCAGCTGCCGGAGAGCATT
GGGGAGCTGCAGGCCTTAGAGCTGCTTGACTTAGATCAGTGCAGCGCGCT
GACGTGCCTGCCGCAGTCCATCGGCAACATGTCGGCACTCAAATCCCTCA
GCTTGCCTGAGTGTACGCAGCTCACGGCTCTGCCTGACTCGATTGGCAAC
CTCAAGTCACTACGAAATCTCAATTTGAGGGAATGCACAGCGCTGTCGTG
CCTGCCCGACTCAATGGGCCACCTGGGGGCGCTGGTGTGTCTCAACCTGA
GGTACTGCAGCGGGCTTGTCAGCTTGCCGACAACAATCGGCCAGCTGGCG
CCGCCGCAGTATCTTGACGTCGACGGATGTTGTGAGCTCGTGAGACAGTC
CGCCGCAGCATTAGTACTTGCAAACCCAAGCGGAGCCTGA

Coding sequence (CDS) from alignment at Contig_101:292040..293029-

>mRNA_10806 ID=mRNA_10806|Name=jgi.p|Trimin1|173268|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=990bp|location=Sequence derived from alignment at Contig_101:292040..293029- (Tribonema minus UTEX_B_3156 )
ATGCAAGAACTGCCAGACTTGATGGGAGACTTGTCGTCGCTGCTCAGGCT
TGAGCTCTGCCATTGCGAGCTGCTCGCTAACCTGCCTAACAGCATTTGCA
GCTTGACGACGCTGACGGCGCTCGATCTTGAGGACTGTGCGCAACTCACT
GCTCTGCCAGACAGTATCGGTCAATTGCGCGCATTGACGTCACTCAGACT
GACCAGGTGTGAGCAGCTTGTCAGCCTGCCAGACAGCGTAGGCGACCTGA
CGGCGCTCAAGCAGTTGGAGTTGCGGCATTTCAACGCACTTCAGACGCTG
CCGAGTAGCATCGGCCGTCTTGCTGCATTGACAGTGCTCAGATTCCACCA
TAGTGTCAGCCTTGAGAGCCTCCCAGACAGCATTGACGCCCTGGCTGCTT
TGACGACGCTCAAGCTCAGCTGCAACAGGGCGCTCACGGGTTTGCCCGAC
AGCATTGTCAATCTGGTCACAGTGACAAAGCTCGACCTGCGCATCTGCCG
TCAGCTGGCGAGCTTACCGGAGTCCATAGGCAAGATGACAGCTCTGTCTC
AGCTTCTACTTGGACGCTGCAGTCATCTCCAGCAGCTGCCGGAGAGCATT
GGGGAGCTGCAGGCCTTAGAGCTGCTTGACTTAGATCAGTGCAGCGCGCT
GACGTGCCTGCCGCAGTCCATCGGCAACATGTCGGCACTCAAATCCCTCA
GCTTGCCTGAGTGTACGCAGCTCACGGCTCTGCCTGACTCGATTGGCAAC
CTCAAGTCACTACGAAATCTCAATTTGAGGGAATGCACAGCGCTGTCGTG
CCTGCCCGACTCAATGGGCCACCTGGGGGCGCTGGTGTGTCTCAACCTGA
GGTACTGCAGCGGGCTTGTCAGCTTGCCGACAACAATCGGCCAGCTGGCG
CCGCCGCAGTATCTTGACGTCGACGGATGTTGTGAGCTCGTGAGACAGTC
CGCCGCAGCATTAGTACTTGCAAACCCAAGCGGAGCCTGA