mRNA_10801 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A835ZGC2_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC2_9STRA) HSP 1 Score: 542 bits (1396), Expect = 2.430e-194 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 1 Query: 1 MPLLANADSPTFPFFAVQLDGLNAQLDSASGTDNGVLLVRRKEILQELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRLC 855 MPLLANADSPTFPFFAVQLDGLNAQLDSASGTDNGVLLVRRKEILQELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRLC Sbjct: 1 MPLLANADSPTFPFFAVQLDGLNAQLDSASGTDNGVLLVRRKEILQELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRLC 285
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI) HSP 1 Score: 195 bits (496), Expect = 7.300e-53 Identity = 130/270 (48.15%), Postives = 159/270 (58.89%), Query Frame = 1 Query: 139 ELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAAD-----------PALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARL-----RGGRGGAYGAAARG----------------RVAVISPYRAQVTRIKVRL 852 EL V ++ RR + L+ ER ++R +L VVCATL+G G +VEAV LSGKGFD V+VDEA QA E + LIPL+LGCKRL LVGDPRQLPAT+ S+ AAR LE SLFERLE AG+ +HML QYR HP IRAFPSARFY GRL+DA + +AA P + P P ++ D+ G+E + G S QN EA+F +ARL R GRG G RV VI+PYR QV I+ L Sbjct: 359 ELLVAKQRRRDALRSLEVERGKIRRSL-----VVCATLSGCGSGPMVEAVSLSGKGFDTVIVDEACQATEPSTLIPLSLGCKRLILVGDPRQLPATVISQRAARLNLEVSLFERLERAGYPVHMLTVQYRMHPEIRAFPSARFYNGRLTDAPCVRDQAAIPAQSPSSETTALPPLGPCFPPFLLVDVSS-GSERRAGSSYQNPREASFVSAFLARLVASGLRSGRGVKAGGXXXXXXXXXXGQDREKSGVVRVGVITPYRGQVHCIQQEL 622
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A2P6VA64_9CHLO (Putative helicase MAGATAMA 3 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VA64_9CHLO) HSP 1 Score: 156 bits (395), Expect = 1.770e-39 Identity = 100/218 (45.87%), Postives = 124/218 (56.88%), Query Frame = 1 Query: 193 ERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALG-CKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIK 843 ER RLR +L A +VC TL+ +G + FD VV+DEAAQAVE + L+PLA G K++ LVGDP QLPAT+ S+ A G SLF+RL+ AG+ +HMLDTQYR HPAIR FPS FYGG L D I P A PA PLV D+ + SL N EA + LR GA + VAVISPY+AQV+ ++ Sbjct: 452 ERDRLRMQILEEANIVCTTLSFSGSSAFTRLT----RKFDVVVIDEAAQAVEPSTLVPLAHGGAKQVYLVGDPVQLPATVMSQRALAQGYSESLFKRLQTAGYPVHMLDTQYRMHPAIREFPSTNFYGGSLKDGPNIQADTQRPWHASPAFHPLVFIDVKGTETVPEGSSSLVNEKEAEMVLQLYRELRHRHAALIGA--KPSVAVISPYKAQVSLLR 663
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A6A6WHW7_9PEZI (Uncharacterized protein n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6WHW7_9PEZI) HSP 1 Score: 155 bits (392), Expect = 6.150e-39 Identity = 104/261 (39.85%), Postives = 155/261 (59.39%), Query Frame = 1 Query: 79 DSASGTDNGVLLVRRK-EILQELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGH--ALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDL-GRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVR 849 ++ DN L RRK ++ ++ + + L ++ + RKR + +L A ++CATL+G+GH D+ +++ + F+ VVVDEAAQ VE + +IPL GC + LVGDP+QLP T+ S+ A+R E SLF R++ H A+H+LDTQYR HP I AFPSA FY GRL D A +A+ P +P L P +D+ G+H A + G SL N +E FA + L G + RG+V +I+PY++Q+ +K R Sbjct: 1425 EAKKAKDNFDNLRRRKAQLSNQIESFKDAEKNLGREAELNRKRAQQQVLDEAHIICATLSGSGH-DMFQSLSIE---FETVVVDEAAQCVEMSAIIPLKYGCSKCILVGDPKQLPPTVFSKQASRFQYERSLFVRMQ-GNHPDAVHLLDTQYRMHPEISAFPSASFYDGRLLDGADMASLRKRPWHDNPILGPYRFFDVKGQHSAAPK-GHSLINIEEINFALQLYDMLNTTYRGGFDI--RGKVGIITPYKSQLRELKSR 1677
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A316U0A7_9BASI (Uncharacterized protein n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U0A7_9BASI) HSP 1 Score: 154 bits (390), Expect = 1.150e-38 Identity = 107/271 (39.48%), Postives = 149/271 (54.98%), Query Frame = 1 Query: 73 QLDSASGTDNGVLLVRRKEILQELGVKRRT-----------RRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERL-ELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVR 849 +L+ A + N L+ ++ LG KR T R+T +++D++R+R+R +L NA V+C TL+GAGH+ LV F+ VV+DEAAQAVE ++LIPL GCKR +VGDPRQLP T+ S+ A SLF RL E A +++L QYR HP I +PS +FYGGRL D +A A +DP L P + + R + G S N +EA A + ARLR A G G+V ++ Y+ QV +K R Sbjct: 1632 ELEQAKASVNETLIKHLDLEIRALGSKRLTAAQKLDDARDKRQTASRKMDADRRRVRTEILLNADVICTTLSGAGHEALVSLPI----DFETVVIDEAAQAVELSILIPLRYGCKRCIMVGDPRQLPPTVLSKKAVTLKYSQSLFVRLFEQAKDRVYLLGIQYRMHPEISTYPSQQFYGGRLIDGDGMAQLTAQTWHSDPLLKPYRFFSI-RGFEQSSRGHSFINVEEAQIAVALYARLRRA---APGYNFDGKVGCVTMYKGQVEELKRR 1894
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A087SRM2_AUXPR (Putative helicase n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SRM2_AUXPR) HSP 1 Score: 154 bits (389), Expect = 1.210e-38 Identity = 104/219 (47.49%), Postives = 128/219 (58.45%), Query Frame = 1 Query: 193 ERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALG-CKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDL-GRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIK 843 ER R R +L A +VC TL+ +G V + FD V+VDEAAQAVE AVL+PLA G +++ LVGDP QLPAT+ S A G SLF RL+ AG+ + +LDTQYR HPAIR FPSA FYGG L D A +A + A PA APLV YD+ GR G SL N+ EA + L G R VAVISPY+AQV+ ++ Sbjct: 471 ERDRARMAILEEASIVCTTLSFSGSASFVRLA----RKFDVVIVDEAAQAVEPAVLVPLAHGGARQVYLVGDPVQLPATVLSSRALAHGYSGSLFSRLQSAGYPVQVLDTQYRMHPAIREFPSATFYGGGLKDGADVAAQTKRAWHASPAFAPLVFYDVPGREGTPAGSN-SLVNTTEAEVVLSIYRELIHRHPELRG---RPAVAVISPYKAQVSLLR 681
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A835W345_9CHLO (Uncharacterized protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A835W345_9CHLO) HSP 1 Score: 153 bits (387), Expect = 2.450e-38 Identity = 94/218 (43.12%), Postives = 124/218 (56.88%), Query Frame = 1 Query: 193 ERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAAR-GRVAVISPYRAQVTRIK 843 ER R+R +L A +VC+TL+ AG Y + FD VV+DEAAQAVE + L+PL +GCK++ LVGDP QLPAT+ + A G + SLF+RL+ AG+ + +LDTQYR HP I AFPSA FY GRL + + P + PA P YD+ + G S+ N EA + L AY R VAVISPY+AQV ++ Sbjct: 467 ERDRMRVAILDEANIVCSTLSFAGSS----VFYRLSRKFDVVVIDEAAQAVEPSTLVPLTMGCKQVYLVGDPVQLPATVIATRAVEQGYDCSLFKRLQTAGYPVKILDTQYRMHPDISAFPSAEFYDGRLLNGEGVVQETVQPWHSQPAFGPFAFYDVAGRESTPPGGASIMNKAEAHMVLVLYRELVH----AYPQLRRTASVAVISPYKAQVKLLR 676
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A3N2Q479_9PEZI (Helicase SEN1 n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2Q479_9PEZI) HSP 1 Score: 152 bits (383), Expect = 9.810e-38 Identity = 98/278 (35.25%), Postives = 151/278 (54.32%), Query Frame = 1 Query: 52 QLDGLNAQLDSASGTD----------NGVLLVRRKEILQELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHA--LHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVR 849 +L L QL++A TD L ++++ I ++ + + TL ++++ RK+++ +L ++QV+CATL+G+GH+ F+ V++DEAAQ VE + LIPL GC + LVGDP+QLP T+ S++AA+ G + SLF R++ H +HMLD QYR HP I FPS FY G+L D +A P + P L P +D+ Q G SL N E A + R R G RG++ +I+PY+AQ+ ++ R Sbjct: 1475 KLAELRPQLEAARATDPDLFSRLRNETDALRLQQRRIGSQIDADKESGNTLSREMEIRRKKVQQEILDSSQVLCATLSGSGHEMFKNL----SVDFETVIIDEAAQCVELSALIPLKYGCTKCILVGDPKQLPPTVLSQSAAKFGYDQSLFVRMQR-NHPEYVHMLDRQYRMHPEISQFPSQEFYEGKLVDGDDMAGLRLRPWHSSPLLGPYRFFDVEGSQERGQKGRSLVNVQELNVAMKIYERFRRDYGQQQQEDLRGKIGIITPYKAQLYELRNR 1747
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: W7TPV4_9STRA (Helicase sen1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPV4_9STRA) HSP 1 Score: 150 bits (380), Expect = 2.540e-37 Identity = 104/249 (41.77%), Postives = 141/249 (56.63%), Query Frame = 1 Query: 139 ELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYD-LGRHGA----------EEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRL 852 EL +R R K L++E+ R+RNNL+ +A+++ +TL+ A L EAV + +GF VV+DEA QAVE + LIPL GC+ L LVGDPRQLPAT+ S + + SLFERLE GH +H+L QYR P I FPS FY +LS+A A+ A + A L YD + GA E + G ++ N +EA FA ++ARLR A +AVI+PYRAQV ++ L Sbjct: 2160 ELYRAKRRRWECLKALEAEKSRIRNNLIRDAKIILSTLSTAASSQLAEAVTSTSRGFGTVVIDEAGQAVEPSTLIPLRYGCRNLILVGDPRQLPATVMSPVLQKYKYDRSLFERLEKGGHPVHLLRVQYRMRPPICRFPSQAFYHNKLSNAPALEA------AEEDADGDLKRYDRVPYFGAYRVFNVSSAREIKRGNAISNIEEAIFAVQLIARLRVEFPDLV---AFKHMAVITPYRAQVRLVEEHL 2399
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A2A9ME56_9APIC (RNA-directed RNA polymerase n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9ME56_9APIC) HSP 1 Score: 149 bits (377), Expect = 5.710e-37 Identity = 96/218 (44.04%), Postives = 128/218 (58.72%), Query Frame = 1 Query: 205 LRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHA--ADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRL 852 ++ +L +++VCATL+ G +D+ A + FD VV+DEA+Q VE + LIPL LGC+RL LVGDPRQLPAT+ SR A + + SLF+RLE AGH ++ML QYR HP I F S+ FY +L DA I PP + P PLV + + EE SL N DEA F +V LR + GR+AVISPY QV+ ++ R+ Sbjct: 870 IKAEILQESRIVCATLSVCGCRDITAAT----EAFDTVVIDEASQGVEISTLIPLRLGCRRLILVGDPRQLPATIFSRVAIQHRYDQSLFQRLEAAGHKVNMLSLQYRMHPCISRFASSTFYQNQLQDAVNIVGLVRPPVPWYSIPIFKPLVFFAINTSHTEEN--TSLINVDEANFVCQMVDLLRRIFVALGQSDWEGRLAVISPYAQQVSLLRRRI 1081 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10801 ID=mRNA_10801|Name=jgi.p|Trimin1|173263|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=858bp|location=Sequence derived from alignment at Contig_101:242066..243495+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCCCTTTTAGCCAATGCTGATAGCCCTACCTTTCCCTTTTTTGCTGTback to top protein sequence of jgi.p|Trimin1|173263 >Trimin1|173263|e_gw1.101.82.1 ID=Trimin1|173263|e_gw1.101.82.1|Name=jgi.p|Trimin1|173263|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=286bp MPLLANADSPTFPFFAVQLDGLNAQLDSASGTDNGVLLVRRKEILQELGVback to top mRNA from alignment at Contig_101:242066..243495+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10801 ID=mRNA_10801|Name=jgi.p|Trimin1|173263|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1430bp|location=Sequence derived from alignment at Contig_101:242066..243495+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_101:242066..243495+ >mRNA_10801 ID=mRNA_10801|Name=jgi.p|Trimin1|173263|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=858bp|location=Sequence derived from alignment at Contig_101:242066..243495+ (Tribonema minus UTEX_B_3156 )back to top |