mRNA_10801 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173263
Unique NamemRNA_10801
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A835ZGC2_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC2_9STRA)

HSP 1 Score: 542 bits (1396), Expect = 2.430e-194
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 1
Query:    1 MPLLANADSPTFPFFAVQLDGLNAQLDSASGTDNGVLLVRRKEILQELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRLC 855
            MPLLANADSPTFPFFAVQLDGLNAQLDSASGTDNGVLLVRRKEILQELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRLC
Sbjct:    1 MPLLANADSPTFPFFAVQLDGLNAQLDSASGTDNGVLLVRRKEILQELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRLC 285          
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 7.300e-53
Identity = 130/270 (48.15%), Postives = 159/270 (58.89%), Query Frame = 1
Query:  139 ELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAAD-----------PALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARL-----RGGRGGAYGAAARG----------------RVAVISPYRAQVTRIKVRL 852
            EL V ++ RR   + L+ ER ++R +L     VVCATL+G G   +VEAV LSGKGFD V+VDEA QA E + LIPL+LGCKRL LVGDPRQLPAT+ S+ AAR  LE SLFERLE AG+ +HML  QYR HP IRAFPSARFY GRL+DA  +  +AA P  +            P   P ++ D+   G+E + G S QN  EA+F    +ARL     R GRG   G                     RV VI+PYR QV  I+  L
Sbjct:  359 ELLVAKQRRRDALRSLEVERGKIRRSL-----VVCATLSGCGSGPMVEAVSLSGKGFDTVIVDEACQATEPSTLIPLSLGCKRLILVGDPRQLPATVISQRAARLNLEVSLFERLERAGYPVHMLTVQYRMHPEIRAFPSARFYNGRLTDAPCVRDQAAIPAQSPSSETTALPPLGPCFPPFLLVDVSS-GSERRAGSSYQNPREASFVSAFLARLVASGLRSGRGVKAGGXXXXXXXXXXGQDREKSGVVRVGVITPYRGQVHCIQQEL 622          
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A2P6VA64_9CHLO (Putative helicase MAGATAMA 3 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VA64_9CHLO)

HSP 1 Score: 156 bits (395), Expect = 1.770e-39
Identity = 100/218 (45.87%), Postives = 124/218 (56.88%), Query Frame = 1
Query:  193 ERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALG-CKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIK 843
            ER RLR  +L  A +VC TL+ +G            + FD VV+DEAAQAVE + L+PLA G  K++ LVGDP QLPAT+ S+ A   G   SLF+RL+ AG+ +HMLDTQYR HPAIR FPS  FYGG L D   I      P  A PA  PLV  D+       +   SL N  EA     +   LR       GA  +  VAVISPY+AQV+ ++
Sbjct:  452 ERDRLRMQILEEANIVCTTLSFSGSSAFTRLT----RKFDVVVIDEAAQAVEPSTLVPLAHGGAKQVYLVGDPVQLPATVMSQRALAQGYSESLFKRLQTAGYPVHMLDTQYRMHPAIREFPSTNFYGGSLKDGPNIQADTQRPWHASPAFHPLVFIDVKGTETVPEGSSSLVNEKEAEMVLQLYRELRHRHAALIGA--KPSVAVISPYKAQVSLLR 663          
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A6A6WHW7_9PEZI (Uncharacterized protein n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6WHW7_9PEZI)

HSP 1 Score: 155 bits (392), Expect = 6.150e-39
Identity = 104/261 (39.85%), Postives = 155/261 (59.39%), Query Frame = 1
Query:   79 DSASGTDNGVLLVRRK-EILQELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGH--ALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDL-GRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVR 849
            ++    DN   L RRK ++  ++   +   + L ++ +  RKR +  +L  A ++CATL+G+GH D+ +++ +    F+ VVVDEAAQ VE + +IPL  GC +  LVGDP+QLP T+ S+ A+R   E SLF R++   H  A+H+LDTQYR HP I AFPSA FY GRL D A +A+    P   +P L P   +D+ G+H A  + G SL N +E  FA  +   L     G +    RG+V +I+PY++Q+  +K R
Sbjct: 1425 EAKKAKDNFDNLRRRKAQLSNQIESFKDAEKNLGREAELNRKRAQQQVLDEAHIICATLSGSGH-DMFQSLSIE---FETVVVDEAAQCVEMSAIIPLKYGCSKCILVGDPKQLPPTVFSKQASRFQYERSLFVRMQ-GNHPDAVHLLDTQYRMHPEISAFPSASFYDGRLLDGADMASLRKRPWHDNPILGPYRFFDVKGQHSAAPK-GHSLINIEEINFALQLYDMLNTTYRGGFDI--RGKVGIITPYKSQLRELKSR 1677          
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A316U0A7_9BASI (Uncharacterized protein n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U0A7_9BASI)

HSP 1 Score: 154 bits (390), Expect = 1.150e-38
Identity = 107/271 (39.48%), Postives = 149/271 (54.98%), Query Frame = 1
Query:   73 QLDSASGTDNGVLLVRRKEILQELGVKRRT-----------RRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERL-ELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVR 849
            +L+ A  + N  L+      ++ LG KR T           R+T  +++D++R+R+R  +L NA V+C TL+GAGH+ LV         F+ VV+DEAAQAVE ++LIPL  GCKR  +VGDPRQLP T+ S+ A       SLF RL E A   +++L  QYR HP I  +PS +FYGGRL D   +A   A    +DP L P   + + R   +   G S  N +EA  A  + ARLR     A G    G+V  ++ Y+ QV  +K R
Sbjct: 1632 ELEQAKASVNETLIKHLDLEIRALGSKRLTAAQKLDDARDKRQTASRKMDADRRRVRTEILLNADVICTTLSGAGHEALVSLPI----DFETVVIDEAAQAVELSILIPLRYGCKRCIMVGDPRQLPPTVLSKKAVTLKYSQSLFVRLFEQAKDRVYLLGIQYRMHPEISTYPSQQFYGGRLIDGDGMAQLTAQTWHSDPLLKPYRFFSI-RGFEQSSRGHSFINVEEAQIAVALYARLRRA---APGYNFDGKVGCVTMYKGQVEELKRR 1894          
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A087SRM2_AUXPR (Putative helicase n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SRM2_AUXPR)

HSP 1 Score: 154 bits (389), Expect = 1.210e-38
Identity = 104/219 (47.49%), Postives = 128/219 (58.45%), Query Frame = 1
Query:  193 ERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALG-CKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDL-GRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIK 843
            ER R R  +L  A +VC TL+ +G    V       + FD V+VDEAAQAVE AVL+PLA G  +++ LVGDP QLPAT+ S  A   G   SLF RL+ AG+ + +LDTQYR HPAIR FPSA FYGG L D A +A +      A PA APLV YD+ GR G       SL N+ EA     +   L        G   R  VAVISPY+AQV+ ++
Sbjct:  471 ERDRARMAILEEASIVCTTLSFSGSASFVRLA----RKFDVVIVDEAAQAVEPAVLVPLAHGGARQVYLVGDPVQLPATVLSSRALAHGYSGSLFSRLQSAGYPVQVLDTQYRMHPAIREFPSATFYGGGLKDGADVAAQTKRAWHASPAFAPLVFYDVPGREGTPAGSN-SLVNTTEAEVVLSIYRELIHRHPELRG---RPAVAVISPYKAQVSLLR 681          
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A835W345_9CHLO (Uncharacterized protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A835W345_9CHLO)

HSP 1 Score: 153 bits (387), Expect = 2.450e-38
Identity = 94/218 (43.12%), Postives = 124/218 (56.88%), Query Frame = 1
Query:  193 ERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAAR-GRVAVISPYRAQVTRIK 843
            ER R+R  +L  A +VC+TL+ AG        Y   + FD VV+DEAAQAVE + L+PL +GCK++ LVGDP QLPAT+ +  A   G + SLF+RL+ AG+ + +LDTQYR HP I AFPSA FY GRL +   +      P  + PA  P   YD+    +    G S+ N  EA     +   L      AY    R   VAVISPY+AQV  ++
Sbjct:  467 ERDRMRVAILDEANIVCSTLSFAGSS----VFYRLSRKFDVVVIDEAAQAVEPSTLVPLTMGCKQVYLVGDPVQLPATVIATRAVEQGYDCSLFKRLQTAGYPVKILDTQYRMHPDISAFPSAEFYDGRLLNGEGVVQETVQPWHSQPAFGPFAFYDVAGRESTPPGGASIMNKAEAHMVLVLYRELVH----AYPQLRRTASVAVISPYKAQVKLLR 676          
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A3N2Q479_9PEZI (Helicase SEN1 n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2Q479_9PEZI)

HSP 1 Score: 152 bits (383), Expect = 9.810e-38
Identity = 98/278 (35.25%), Postives = 151/278 (54.32%), Query Frame = 1
Query:   52 QLDGLNAQLDSASGTD----------NGVLLVRRKEILQELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHA--LHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVR 849
            +L  L  QL++A  TD             L ++++ I  ++   + +  TL ++++  RK+++  +L ++QV+CATL+G+GH+            F+ V++DEAAQ VE + LIPL  GC +  LVGDP+QLP T+ S++AA+ G + SLF R++   H   +HMLD QYR HP I  FPS  FY G+L D   +A     P  + P L P   +D+       Q G SL N  E   A  +  R R   G       RG++ +I+PY+AQ+  ++ R
Sbjct: 1475 KLAELRPQLEAARATDPDLFSRLRNETDALRLQQRRIGSQIDADKESGNTLSREMEIRRKKVQQEILDSSQVLCATLSGSGHEMFKNL----SVDFETVIIDEAAQCVELSALIPLKYGCTKCILVGDPKQLPPTVLSQSAAKFGYDQSLFVRMQR-NHPEYVHMLDRQYRMHPEISQFPSQEFYEGKLVDGDDMAGLRLRPWHSSPLLGPYRFFDVEGSQERGQKGRSLVNVQELNVAMKIYERFRRDYGQQQQEDLRGKIGIITPYKAQLYELRNR 1747          
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: W7TPV4_9STRA (Helicase sen1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPV4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.540e-37
Identity = 104/249 (41.77%), Postives = 141/249 (56.63%), Query Frame = 1
Query:  139 ELGVKRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHAADPALAPLVVYD-LGRHGA----------EEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRL 852
            EL   +R R    K L++E+ R+RNNL+ +A+++ +TL+ A    L EAV  + +GF  VV+DEA QAVE + LIPL  GC+ L LVGDPRQLPAT+ S    +   + SLFERLE  GH +H+L  QYR  P I  FPS  FY  +LS+A A+        A + A   L  YD +   GA          E + G ++ N +EA FA  ++ARLR          A   +AVI+PYRAQV  ++  L
Sbjct: 2160 ELYRAKRRRWECLKALEAEKSRIRNNLIRDAKIILSTLSTAASSQLAEAVTSTSRGFGTVVIDEAGQAVEPSTLIPLRYGCRNLILVGDPRQLPATVMSPVLQKYKYDRSLFERLEKGGHPVHLLRVQYRMRPPICRFPSQAFYHNKLSNAPALEA------AEEDADGDLKRYDRVPYFGAYRVFNVSSAREIKRGNAISNIEEAIFAVQLIARLRVEFPDLV---AFKHMAVITPYRAQVRLVEEHL 2399          
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Match: A0A2A9ME56_9APIC (RNA-directed RNA polymerase n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9ME56_9APIC)

HSP 1 Score: 149 bits (377), Expect = 5.710e-37
Identity = 96/218 (44.04%), Postives = 128/218 (58.72%), Query Frame = 1
Query:  205 LRNNLLSNAQVVCATLAGAGHQDLVEAVYLSGKGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAARAGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAIATRAAPPHA--ADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVARLRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRL 852
            ++  +L  +++VCATL+  G +D+  A     + FD VV+DEA+Q VE + LIPL LGC+RL LVGDPRQLPAT+ SR A +   + SLF+RLE AGH ++ML  QYR HP I  F S+ FY  +L DA  I     PP    + P   PLV + +     EE    SL N DEA F   +V  LR        +   GR+AVISPY  QV+ ++ R+
Sbjct:  870 IKAEILQESRIVCATLSVCGCRDITAAT----EAFDTVVIDEASQGVEISTLIPLRLGCRRLILVGDPRQLPATIFSRVAIQHRYDQSLFQRLEAAGHKVNMLSLQYRMHPCISRFASSTFYQNQLQDAVNIVGLVRPPVPWYSIPIFKPLVFFAINTSHTEEN--TSLINVDEANFVCQMVDLLRRIFVALGQSDWEGRLAVISPYAQQVSLLRRRI 1081          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173263 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZGC2_9STRA2.430e-194100.00AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
D8LLI3_ECTSI7.300e-5348.15Presumed helicase required for RNA polymerase II t... [more]
A0A2P6VA64_9CHLO1.770e-3945.87Putative helicase MAGATAMA 3 n=1 Tax=Micractinium ... [more]
A0A6A6WHW7_9PEZI6.150e-3939.85Uncharacterized protein n=1 Tax=Pseudovirgaria hyp... [more]
A0A316U0A7_9BASI1.150e-3839.48Uncharacterized protein n=1 Tax=Pseudomicrostroma ... [more]
A0A087SRM2_AUXPR1.210e-3847.49Putative helicase n=3 Tax=Auxenochlorella protothe... [more]
A0A835W345_9CHLO2.450e-3843.12Uncharacterized protein n=3 Tax=Chlamydomonas TaxI... [more]
A0A3N2Q479_9PEZI9.810e-3835.25Helicase SEN1 n=1 Tax=Sodiomyces alkalinus F11 Tax... [more]
W7TPV4_9STRA2.540e-3741.77Helicase sen1 n=3 Tax=Nannochloropsis gaditana Tax... [more]
A0A2A9ME56_9APIC5.710e-3744.04RNA-directed RNA polymerase n=1 Tax=Besnoitia besn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:242066..243495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173263|e_gw1.101.82.1
BRITEko00000,ko01000,ko03021
KEGG koko:K10706
Descriptionpositive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1112@1|root,KOG1801@2759|Eukaryota
Evalue1.2e-53
Seed ortholog2880.D8LLI3
Hectar predicted targeting categoryother localisation
TranscriptId173585
TrackFilteredModels1
ProteinId173263
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173263gene_10801Tribonema minus UTEX_B_3156 geneContig_101 242066..243495 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10801_1exon_10801_1Tribonema minus UTEX_B_3156 exonContig_101 242066..242299 +
exon_10801_2exon_10801_2Tribonema minus UTEX_B_3156 exonContig_101 242872..243495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10801CDS_10801Tribonema minus UTEX_B_3156 CDSContig_101 242066..242299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173263Trimin1|173263|e_gw1.101.82.1Tribonema minus UTEX_B_3156 polypeptideContig_101 242066..243495 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10801 ID=mRNA_10801|Name=jgi.p|Trimin1|173263|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=858bp|location=Sequence derived from alignment at Contig_101:242066..243495+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCTTTTAGCCAATGCTGATAGCCCTACCTTTCCCTTTTTTGCTGT
GCAGCTGGATGGCCTCAACGCTCAGCTAGACAGCGCGTCGGGAACGGACA
ACGGCGTGCTGCTGGTGCGGCGCAAGGAGATACTGCAGGAGCTGGGGGTG
AAGCGGCGCACGCGGCGGACGCTGTTCAAGCAGCTCGACAGCGAGCGCAA
GCGCTTGCGCAACAACCTCCTGTCCAATGCGCAGGTCGTGTGCGCCACGC
TCGCGGGCGCGGGCCACCAGGACCTTGTGGAAGCCGTGTACCTCTCCGGC
AAGGGCTTCGACCACGTCGTGGTGGACGAGGCCGCGCAGGCCGTCGAGAC
GGCAGTGCTCATACCGCTGGCCCTCGGCTGCAAGCGCCTGACGCTGGTGG
GGGACCCGCGCCAGCTGCCGGCGACGCTGAAGTCGCGCGCGGCGGCGCGC
GCGGGCCTGGAGGCGTCGCTGTTCGAGCGTCTCGAGCTCGCTGGCCACGC
GCTCCACATGCTCGACACGCAGTACCGCTGCCACCCGGCGATACGCGCGT
TCCCGAGCGCGCGCTTCTACGGCGGACGCCTGAGCGATGCCGCGGCGATC
GCGACGCGCGCCGCGCCGCCGCACGCCGCCGACCCCGCCCTCGCGCCCCT
TGTCGTGTATGACCTCGGCAGGCACGGCGCGGAGGAGCAGCACGGCGTCA
GCCTGCAGAACTCGGACGAGGCGGCGTTCGCGTTTGACGTGGTGGCGCGG
CTGAGGGGGGGGCGCGGGGGGGCGTACGGGGCGGCGGCGCGCGGGCGCGT
GGCGGTGATCAGCCCGTACCGCGCGCAGGTGACGCGCATCAAGGTGAGGC
TTTGTTGA
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protein sequence of jgi.p|Trimin1|173263

>Trimin1|173263|e_gw1.101.82.1 ID=Trimin1|173263|e_gw1.101.82.1|Name=jgi.p|Trimin1|173263|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=286bp
MPLLANADSPTFPFFAVQLDGLNAQLDSASGTDNGVLLVRRKEILQELGV
KRRTRRTLFKQLDSERKRLRNNLLSNAQVVCATLAGAGHQDLVEAVYLSG
KGFDHVVVDEAAQAVETAVLIPLALGCKRLTLVGDPRQLPATLKSRAAAR
AGLEASLFERLELAGHALHMLDTQYRCHPAIRAFPSARFYGGRLSDAAAI
ATRAAPPHAADPALAPLVVYDLGRHGAEEQHGVSLQNSDEAAFAFDVVAR
LRGGRGGAYGAAARGRVAVISPYRAQVTRIKVRLC*
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mRNA from alignment at Contig_101:242066..243495+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10801 ID=mRNA_10801|Name=jgi.p|Trimin1|173263|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1430bp|location=Sequence derived from alignment at Contig_101:242066..243495+ (Tribonema minus UTEX_B_3156 )
ATGCCCCTTTTAGCCAATGCTGATAGCCCTACCTTTCCCTTTTTTGCTGT GCAGCTGGATGGCCTCAACGCTCAGCTAGACAGCGCGTCGGGAACGGACA ACGGCGTGCTGCTGGTGCGGCGCAAGGAGATACTGCAGGAGCTGGGGGTG AAGCGGCGCACGCGGCGGACGCTGTTCAAGCAGCTCGACAGCGAGCGCAA GCGCTTGCGCAACAACCTCCTGTCCAATGCGCAGGTGAAGTTGTAGTTCT CATTGATCTGACCAGGTCCACTAAGGAAGAACATTGAGATTAATGCCCAG ATGAAATGTGCCCCTAAGAAAATTAGACTGTGCTGCGCGTGCCGCACAAT TCTGGTGTGGTGTCCATCATAGCAAGCCCAAGTCTGGCTTTTAGCAAGTA AATTGCACACTGCATGGGTGCTGAACGGGGTGCACTGTGAATCACTTGGT CGACTGCGTCAGCCAGCGTTTTAATGATATTGTCGGCCAGGATCTCACCC TCTTGAGTGGGATTTGCTGATGCAGCAGTGCTCTGCCAACAGCTTGACAG CAAGCACACCGTAGCACAGGCGGGACGAGTAGAGTAGCTAGAGTGCAAGC GCTACTCTACTATTACTTTGCACTCTGCTGACAGGGGCGTTGGTGTAGAG TGGTCGAGTACACAACACTCTAGTTGGCAGGCACTTTTTGAGTCGAGCGC GAGTGACAAGTATTTCTCCCACGCTGTATCTCTCTCGCACCCATGCCGTC AAACTGCAACCCCATTCAACTTCAGCTTCAACCTCCCCCCGCGGCACCGC GCTCAGGTCGTGTGCGCCACGCTCGCGGGCGCGGGCCACCAGGACCTTGT GGAAGCCGTGTACCTCTCCGGCAAGGGCTTCGACCACGTCGTGGTGGACG AGGCCGCGCAGGCCGTCGAGACGGCAGTGCTCATACCGCTGGCCCTCGGC TGCAAGCGCCTGACGCTGGTGGGGGACCCGCGCCAGCTGCCGGCGACGCT GAAGTCGCGCGCGGCGGCGCGCGCGGGCCTGGAGGCGTCGCTGTTCGAGC GTCTCGAGCTCGCTGGCCACGCGCTCCACATGCTCGACACGCAGTACCGC TGCCACCCGGCGATACGCGCGTTCCCGAGCGCGCGCTTCTACGGCGGACG CCTGAGCGATGCCGCGGCGATCGCGACGCGCGCCGCGCCGCCGCACGCCG CCGACCCCGCCCTCGCGCCCCTTGTCGTGTATGACCTCGGCAGGCACGGC GCGGAGGAGCAGCACGGCGTCAGCCTGCAGAACTCGGACGAGGCGGCGTT CGCGTTTGACGTGGTGGCGCGGCTGAGGGGGGGGCGCGGGGGGGCGTACG GGGCGGCGGCGCGCGGGCGCGTGGCGGTGATCAGCCCGTACCGCGCGCAG GTGACGCGCATCAAGGTGAGGCTTTGTTGA
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Coding sequence (CDS) from alignment at Contig_101:242066..243495+

>mRNA_10801 ID=mRNA_10801|Name=jgi.p|Trimin1|173263|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=858bp|location=Sequence derived from alignment at Contig_101:242066..243495+ (Tribonema minus UTEX_B_3156 )
ATGCCCCTTTTAGCCAATGCTGATAGCCCTACCTTTCCCTTTTTTGCTGT
GCAGCTGGATGGCCTCAACGCTCAGCTAGACAGCGCGTCGGGAACGGACA
ACGGCGTGCTGCTGGTGCGGCGCAAGGAGATACTGCAGGAGCTGGGGGTG
AAGCGGCGCACGCGGCGGACGCTGTTCAAGCAGCTCGACAGCGAGCGCAA
GCGCTTGCGCAACAACCTCCTGTCCAATGCGCAGGTCGTGTGCGCCACGC
TCGCGGGCGCGGGCCACCAGGACCTTGTGGAAGCCGTGTACCTCTCCGGC
AAGGGCTTCGACCACGTCGTGGTGGACGAGGCCGCGCAGGCCGTCGAGAC
GGCAGTGCTCATACCGCTGGCCCTCGGCTGCAAGCGCCTGACGCTGGTGG
GGGACCCGCGCCAGCTGCCGGCGACGCTGAAGTCGCGCGCGGCGGCGCGC
GCGGGCCTGGAGGCGTCGCTGTTCGAGCGTCTCGAGCTCGCTGGCCACGC
GCTCCACATGCTCGACACGCAGTACCGCTGCCACCCGGCGATACGCGCGT
TCCCGAGCGCGCGCTTCTACGGCGGACGCCTGAGCGATGCCGCGGCGATC
GCGACGCGCGCCGCGCCGCCGCACGCCGCCGACCCCGCCCTCGCGCCCCT
TGTCGTGTATGACCTCGGCAGGCACGGCGCGGAGGAGCAGCACGGCGTCA
GCCTGCAGAACTCGGACGAGGCGGCGTTCGCGTTTGACGTGGTGGCGCGG
CTGAGGGGGGGGCGCGGGGGGGCGTACGGGGCGGCGGCGCGCGGGCGCGT
GGCGGTGATCAGCCCGTACCGCGCGCAGGTGACGCGCATCAAGGTGAGGC
TTTGTTGA
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