mRNA_10723 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174137
Unique NamemRNA_10723
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174137 vs. uniprot
Match: A0A835ZDL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL5_9STRA)

HSP 1 Score: 451 bits (1161), Expect = 3.430e-160
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1 
Query:    1 MLAWVQRRRSKARTEDAELAPSPDTIGSLYGEQVWGGEPPFGLFYTLTGHGLLHLALLGGLYQYIDTVEWKVLLFWAIPPLLHGWLHGRNPLLWLFLSPQCLAASGLGAGAALSDGLDAHVLGLRVSVWDAAIDALQWLLMVAGGLTLFLAPPPLPPRRAAASYAPAALLLALALALPAWQMRALTRRVVRLVRAAADGLDARWSGMKVLAQVRRQRQSAXXXXXXGGGRSRRVQ 705
            MLAWVQRRRSKARTEDAELAPSPDTIGSLYGEQVWGGEPPFGLFYTLTGHGLLHLALLGGLYQYIDTVEWKVLLFWAIPPLLHGWLHGRNPLLWLFLSPQCLAASGLGAGAALSDGLDAHVLGLRVSVWDAAIDALQWLLMVAGGLTLFLAPPPLPPRRAAASYAPAALLLALALALPAWQMRALTRRVVRLVRAAADGLDARWSGMKVLAQVRRQRQSAXXXXXXGGGRSRRVQ
Sbjct:    1 MLAWVQRRRSKARTEDAELAPSPDTIGSLYGEQVWGGEPPFGLFYTLTGHGLLHLALLGGLYQYIDTVEWKVLLFWAIPPLLHGWLHGRNPLLWLFLSPQCLAASGLGAGAALSDGLDAHVLGLRVSVWDAAIDALQWLLMVAGGLTLFLAPPPLPPRRAAASYAPAALLLALALALPAWQMRALTRRVVRLVRAAADGLDARWSGMKVLAQVRRQRQSAXXXXXXGGGRSRRVQ 235
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BLAST of jgi.p|Trimin1|174137 vs. uniprot
Match: A0A835Z7D7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D7_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.360e-51
Identity = 95/154 (61.69%), Postives = 112/154 (72.73%), Query Frame = 1 
Query:  178 GLYQYIDTVEWKVLLFWAIPPLLHGWLHGRNPLLWLFLSPQCLAASGLGAGAALSDGLDAHVLGLRVSVWDAAIDALQWLLMVAGGLTLFLAPPPLPPRRAAASYAPAALLLALALALPAWQMRALTRRVVRLVRAAADGLDARWSGMKVLAQV 639
            GLYQY+DTVEWKVLL W++PPLLHGWLHG NPLLWL LSP+CL A+G+ A A+ +D +    LG RV   D  + ALQW  ++ GGL LFL P      R AASYAP + LLA+A+ LPAWQ+R LT RVVR V A  D LDARW GMKVLAQ+
Sbjct:   59 GLYQYVDTVEWKVLLLWSVPPLLHGWLHGANPLLWLLLSPKCLRAAGVAAAASGADAIPVRALGARVDTLDLCVTALQWASLLVGGLALFLTPVS---GRPAASYAPTSALLAVAIVLPAWQLRTLTGRVVRRVEANED-LDARWRGMKVLAQL 208
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174137 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZDL5_9STRA3.430e-160100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7D7_9STRA2.360e-5161.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_110contigContig_110:288471..289400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174137|e_gw1.110.66.1
Hectar predicted targeting categoryother localisation
TranscriptId174459
TrackFilteredModels1
ProteinId174137
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174137gene_10723Tribonema minus UTEX_B_3156 geneContig_110 288471..289400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174137Trimin1|174137|e_gw1.110.66.1Tribonema minus UTEX_B_3156 polypeptideContig_110 288471..289400 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10723_2exon_10723_2Tribonema minus UTEX_B_3156 exonContig_110 288471..289000 -
exon_10723_1exon_10723_1Tribonema minus UTEX_B_3156 exonContig_110 289223..289400 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10723CDS_10723Tribonema minus UTEX_B_3156 CDSContig_110 289223..289400 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10723 ID=mRNA_10723|Name=jgi.p|Trimin1|174137|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=708bp|location=Sequence derived from alignment at Contig_110:288471..289400- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCGTGGGTGCAAAGGAGACGAAGCAAGGCGAGAACCGAAGATGC
TGAGCTTGCTCCGAGTCCTGACACCATCGGGAGCCTCTACGGCGAGCAGG
TGTGGGGGGGGGAGCCGCCATTTGGCCTCTTTTACACTTTGACAGGCCAC
GGTCTTCTGCACCTGGCTCTGCTGGGAGGCCTCTACCAGTACATCGACAC
GGTGGAGTGGAAGGTGCTGCTGTTCTGGGCGATCCCCCCGCTGCTGCACG
GCTGGCTCCACGGCCGCAACCCCCTCCTCTGGCTCTTCCTCAGCCCGCAG
TGCCTCGCGGCGAGCGGCCTCGGCGCGGGGGCAGCGCTCAGCGACGGCCT
CGACGCGCACGTCCTCGGTCTGCGCGTCAGCGTGTGGGACGCCGCCATCG
ACGCGCTGCAGTGGCTGCTCATGGTCGCCGGCGGACTCACGCTCTTCCTC
GCGCCGCCGCCGCTGCCGCCGCGCCGCGCCGCCGCGTCGTACGCGCCCGC
GGCGCTGCTGCTCGCGCTCGCGCTCGCGCTGCCGGCGTGGCAGATGCGCG
CGCTGACGCGCCGCGTCGTGCGCCTCGTGCGCGCCGCCGCGGACGGCCTC
GACGCGCGGTGGAGCGGCATGAAAGTGCTGGCGCAGGTGCGGCGACAGAG
GCAGAGTGCGCGCGCGCGCTGCCGCTGCGGGGGCGGCAGGTCTCGTCGCG
TGCAGTAA
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protein sequence of jgi.p|Trimin1|174137

>Trimin1|174137|e_gw1.110.66.1 ID=Trimin1|174137|e_gw1.110.66.1|Name=jgi.p|Trimin1|174137|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=236bp
MLAWVQRRRSKARTEDAELAPSPDTIGSLYGEQVWGGEPPFGLFYTLTGH
GLLHLALLGGLYQYIDTVEWKVLLFWAIPPLLHGWLHGRNPLLWLFLSPQ
CLAASGLGAGAALSDGLDAHVLGLRVSVWDAAIDALQWLLMVAGGLTLFL
APPPLPPRRAAASYAPAALLLALALALPAWQMRALTRRVVRLVRAAADGL
DARWSGMKVLAQVRRQRQSARARCRCGGGRSRRVQ*
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mRNA from alignment at Contig_110:288471..289400-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10723 ID=mRNA_10723|Name=jgi.p|Trimin1|174137|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=930bp|location=Sequence derived from alignment at Contig_110:288471..289400- (Tribonema minus UTEX_B_3156 )
ATGTTGGCGTGGGTGCAAAGGAGACGAAGCAAGGCGAGAACCGAAGATGC
TGAGCTTGCTCCGAGTCCTGACACCATCGGGAGCCTCTACGGCGAGCAGG
TGTGGGGGGGGGAGCCGCCATTTGGCCTCTTTTACACTTTGACAGGCCAC
GGTCTTCTGCACCTGGCTCTGCTGGGAGGTGAGGAAACATAAGAGAAAAC
TGAAGTGTCTGCTGGGGCAAGTGCAGTGTCATTGATGATCGGTGGCAGCT
CCCTCAAGGCGCTTGCTGATCCTCGATTTCGTCACATCAGTTCCTGACTT
TTCTGGCTGTGTCGGTGATTGAAGTTTGTGCATTTCACTCACGAAACTCC
GGATTCTCGTCATCGGCTCACTGCATGCCCCCCCCCGGCGCCTGCGGCAG
GCCTCTACCAGTACATCGACACGGTGGAGTGGAAGGTGCTGCTGTTCTGG
GCGATCCCCCCGCTGCTGCACGGCTGGCTCCACGGCCGCAACCCCCTCCT
CTGGCTCTTCCTCAGCCCGCAGTGCCTCGCGGCGAGCGGCCTCGGCGCGG
GGGCAGCGCTCAGCGACGGCCTCGACGCGCACGTCCTCGGTCTGCGCGTC
AGCGTGTGGGACGCCGCCATCGACGCGCTGCAGTGGCTGCTCATGGTCGC
CGGCGGACTCACGCTCTTCCTCGCGCCGCCGCCGCTGCCGCCGCGCCGCG
CCGCCGCGTCGTACGCGCCCGCGGCGCTGCTGCTCGCGCTCGCGCTCGCG
CTGCCGGCGTGGCAGATGCGCGCGCTGACGCGCCGCGTCGTGCGCCTCGT
GCGCGCCGCCGCGGACGGCCTCGACGCGCGGTGGAGCGGCATGAAAGTGC
TGGCGCAGGTGCGGCGACAGAGGCAGAGTGCGCGCGCGCGCTGCCGCTGC
GGGGGCGGCAGGTCTCGTCGCGTGCAGTAA
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Coding sequence (CDS) from alignment at Contig_110:288471..289400-

>mRNA_10723 ID=mRNA_10723|Name=jgi.p|Trimin1|174137|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=708bp|location=Sequence derived from alignment at Contig_110:288471..289400- (Tribonema minus UTEX_B_3156 )
ATGTTGGCGTGGGTGCAAAGGAGACGAAGCAAGGCGAGAACCGAAGATGC
TGAGCTTGCTCCGAGTCCTGACACCATCGGGAGCCTCTACGGCGAGCAGG
TGTGGGGGGGGGAGCCGCCATTTGGCCTCTTTTACACTTTGACAGGCCAC
GGTCTTCTGCACCTGGCTCTGCTGGGAGGCCTCTACCAGTACATCGACAC
GGTGGAGTGGAAGGTGCTGCTGTTCTGGGCGATCCCCCCGCTGCTGCACG
GCTGGCTCCACGGCCGCAACCCCCTCCTCTGGCTCTTCCTCAGCCCGCAG
TGCCTCGCGGCGAGCGGCCTCGGCGCGGGGGCAGCGCTCAGCGACGGCCT
CGACGCGCACGTCCTCGGTCTGCGCGTCAGCGTGTGGGACGCCGCCATCG
ACGCGCTGCAGTGGCTGCTCATGGTCGCCGGCGGACTCACGCTCTTCCTC
GCGCCGCCGCCGCTGCCGCCGCGCCGCGCCGCCGCGTCGTACGCGCCCGC
GGCGCTGCTGCTCGCGCTCGCGCTCGCGCTGCCGGCGTGGCAGATGCGCG
CGCTGACGCGCCGCGTCGTGCGCCTCGTGCGCGCCGCCGCGGACGGCCTC
GACGCGCGGTGGAGCGGCATGAAAGTGCTGGCGCAGGTGCGGCGACAGAG
GCAGAGTGCGCGCGCGCGCTGCCGCTGCGGGGGCGGCAGGTCTCGTCGCG
TGCAGTAA
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