mRNA_10722 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174061
Unique NamemRNA_10722
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174061 vs. uniprot
Match: A0A835ZIB5_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIB5_9STRA)

HSP 1 Score: 520 bits (1339), Expect = 1.360e-186
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1 
Query:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHTAHLGALRPTHRLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGFGKE 771
            LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHTAHLGALRPTHRLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGFGKE
Sbjct:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHTAHLGALRPTHRLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGFGKE 257
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BLAST of jgi.p|Trimin1|174061 vs. uniprot
Match: A0A836CIZ9_9STRA (Ubiquitin protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ9_9STRA)

HSP 1 Score: 396 bits (1017), Expect = 1.080e-135
Identity = 194/257 (75.49%), Postives = 217/257 (84.44%), Query Frame = 1 
Query:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHTAHLGALRPTHRLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGFGKE 771
            LYKH+LG PVT RDL+FVD KL +NL+WLR HQ  +V   +LDF+T+E +GHA  GRERY+V+EL PGGRD+LVTDANKHE+ E++TKFKLLDRIS QLAA+L+GFYEVIPPGLLVVF PQELELL CGLD IDVDDWAAHTA LG LRPTHRLVRWFWDVVR+ DQ  RARLLQFVTGTSRVPLGGFR L+G DGE R FTLAALP   Y   GAYP+AHTCFNRLDLP YGDRE LR  LA V+++EL TGFGKE
Sbjct:  125 LYKHLLGVPVTHRDLKFVDRKLAENLQWLRGHQNVEV--LSLDFTTVEESGHAAKGRERYQVVELKPGGRDILVTDANKHEFCEISTKFKLLDRISPQLAAMLSGFYEVIPPGLLVVFDPQELELLLCGLDAIDVDDWAAHTALLGTLRPTHRLVRWFWDVVREFDQPTRARLLQFVTGTSRVPLGGFRELQGVDGEVRLFTLAALPAPAYG-EGAYPVAHTCFNRLDLPPYGDRETLRAKLAEVIELELRTGFGKE 378
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BLAST of jgi.p|Trimin1|174061 vs. uniprot
Match: A0A8K1FNP1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNP1_PYTOL)

HSP 1 Score: 238 bits (608), Expect = 5.380e-70
Identity = 123/262 (46.95%), Postives = 164/262 (62.60%), Query Frame = 1 
Query:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHTA-----HLGALRPTHRLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGFGKE 771
            L KH+LG P++  DL+F+D +L++N  WLR++    V    LDF+   V GH           EL PGG+D+LVTD NK EY+++  K+K+ D +  QL+A+L G Y+VIPP LL VF  QELELL CG+  IDVDDW  HT      +    +P  +++ WFW+ VR   Q  RARLLQFVTGTSRVP+ GF+AL   DG  R F +  +P  +  P G YP AHTCFNR+D+PLY  R+ L   L  V+ +E+ TGF  +
Sbjct:  523 LLKHVLGVPISFSDLEFLDEELYRNASWLRTNDR--VENLCLDFTVQHVDGHGA-----MVTHELKPGGKDILVTDDNKEEYLDLLIKYKMFDSVQEQLSAILQGLYDVIPPTLLAVFDYQELELLLCGVPRIDVDDWMRHTDVKYQDYDHPTKPEKKVIEWFWETVRTFSQEERARLLQFVTGTSRVPVEGFKALLSNDGRVRRFGIQIVPCGV-PPTGLYPKAHTCFNRIDIPLYKTRDDLETYLTLVINMEI-TGFSMQ 775
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BLAST of jgi.p|Trimin1|174061 vs. uniprot
Match: A0A3F2RUC3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUC3_9STRA)

HSP 1 Score: 231 bits (588), Expect = 3.980e-69
Identity = 129/263 (49.05%), Postives = 162/263 (61.60%), Query Frame = 1 
Query:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHT------AHLGALRPT---HRLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGF 762
            L KH+LG P++  DL+F+D +LH++  WLR ++GA+    ALDF+    AG      E     EL PGG+D+ VTDANK EY+ +  K K+ D +  QL ALL G Y+V+P  LL VF  QELELL CG+  IDV DW +HT      A  G  +P+     +V+WFWD +R   Q  RARLLQFVTGTSRVP  GFRAL   DG  R F L  +P     P G YP AHTCFNR+D+PLY  RE L   L  V+ +E+ TGF
Sbjct:  270 LLKHLLGVPISFSDLEFLDAELHRHALWLRENEGAEA--LALDFTAQRQAGDGTVVTE-----ELKPGGKDIPVTDANKEEYLTLLLKHKMFDGVREQLEALLQGLYDVLPRTLLSVFDYQELELLLCGVPSIDVADWESHTDVRYLHADQGFKKPSASERNVVQWFWDTIRAFSQEERARLLQFVTGTSRVPAEGFRALLSHDGRVRRFGLQLVPLGA-PPTGLYPKAHTCFNRIDVPLYRSREELVTYLTLVINMEI-TGF 523
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BLAST of jgi.p|Trimin1|174061 vs. uniprot
Match: K3X015_GLOUD (HECT domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X015_GLOUD)

HSP 1 Score: 227 bits (578), Expect = 6.480e-68
Identity = 121/262 (46.18%), Postives = 163/262 (62.21%), Query Frame = 1 
Query:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHT-AHLGAL-RPTH---RLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGFGKE 771
            L KHILG P++  DL+F+D +L++N  WLR +  A+     LDF+   +      G +     EL PGG+D+LVTD NK EY+ +  K+K+ D +  Q++A+L G Y+VIP  L+ VF  QELELL CG+  IDVDDW  H+ A   A  +PT    ++V WFW+ VR   Q  RARLLQFVTGTSRVP+ GF+AL   DG  R F +  +P     P G YP AHTCFNR+DLP+Y  ++ L   L  V+ +E+ TGF  +
Sbjct:  247 LLKHILGVPISFSDLEFLDEELYRNALWLRENDHAEA--LCLDFTIQRI-----DGNDEMVTEELKPGGKDILVTDENKEEYLSLLMKYKMFDSVKEQVSAILQGLYDVIPRSLMAVFDYQELELLLCGVPKIDVDDWHDHSDAKYQAFDQPTKAEKKVVEWFWETVRSFSQEQRARLLQFVTGTSRVPVEGFKALLSNDGRVRRFGIQIVPRGT-PPAGLYPKAHTCFNRIDLPMYQTKQELETYLTLVINMEI-TGFSMQ 499
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BLAST of jgi.p|Trimin1|174061 vs. uniprot
Match: A0A2D4BKZ0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKZ0_PYTIN)

HSP 1 Score: 230 bits (587), Expect = 3.400e-67
Identity = 123/259 (47.49%), Postives = 161/259 (62.16%), Query Frame = 1 
Query:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHT--AHLGALRPTH---RLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGF 762
            L KH+LG P++  DL+F+D +L++N  WLRS+   +V    LDF+   +  H     E     EL PGGRD+ V D+NK EY+ +  K K+ D +  Q++A++ G Y+V+P  LL VF  QELELL CG+  IDVDDW  HT   +L    PT    R++ WFW+ VR   Q  RARLLQFVTGTSRVP+ GF+AL   DG  R F +  +P  +  P G YP AHTCFNR+DLPLY  RE L   L  V+ +E+ TGF
Sbjct:  487 LLKHLLGVPISFSDLEFLDEELYRNASWLRSND--NVENLCLDFTIQRLDAHGAVITE-----ELKPGGRDITVNDSNKEEYLNLLVKHKMFDSVQDQVSAIIQGLYDVLPRTLLAVFDYQELELLICGVPKIDVDDWMRHTDTKYLDFDHPTKPEKRMIEWFWETVRTFSQEERARLLQFVTGTSRVPVEGFKALLSNDGRVRRFGIQVVPCGV-PPTGLYPKAHTCFNRIDLPLYKTREDLETYLTLVINMEV-TGF 736
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BLAST of jgi.p|Trimin1|174061 vs. uniprot
Match: H3GG84_PHYRM (HECT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG84_PHYRM)

HSP 1 Score: 222 bits (566), Expect = 5.000e-67
Identity = 125/263 (47.53%), Postives = 161/263 (61.22%), Query Frame = 1 
Query:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHT------AHLGALRPT---HRLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGF 762
            L KH+LG P++  DL+F+D +LH++  WLR ++GA+    ALDF+    A +     E     EL  GG+D+ VTDANK EY+ +  + K+   +  QL ALL G Y+V+P  LL VF  QE+ELL CG+  IDV DW +HT      A  G  RP+    ++V+WFWD VR   Q  RARLLQFVTGTSRVP  GFRAL   DG  R F L  +P     P G YP AHTCFNRLDLP+Y   + L + L  V+ +E+A GF
Sbjct:  160 LLKHLLGVPISFSDLEFLDAELHRHALWLRDNEGAEA--LALDFTVQRQANNGTVITE-----ELKQGGKDIPVTDANKEEYLTLLLRHKMFAGVHDQLEALLQGLYDVLPRTLLAVFDYQEMELLLCGVPSIDVADWESHTDVRYMRAEQGLNRPSSPERQVVQWFWDAVRAFSQEERARLLQFVTGTSRVPAEGFRALLSHDGRIRRFGLQMMPLGA-PPTGLYPKAHTCFNRLDLPVYPSYQELEKYLTLVINMEIA-GF 413
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BLAST of jgi.p|Trimin1|174061 vs. uniprot
Match: A0A7S1YZD2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZD2_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.180e-66
Identity = 120/260 (46.15%), Postives = 160/260 (61.54%), Query Frame = 1 
Query:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHTAHLGAL---RPTHRLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGFGKE 771
            LYKH+LG PVT  DL+ VD + + +L+ L+  +  DVS   LDF+TME      G +     +ELV GG D+ V ++N  EY+E   K++++ R+  Q+  LL GF++VIP  LL +F  QELELL CGL VID+DDW  HT + G        H + RWFW+VV D DQ  +ARLLQFVTGTS VP  GF  L+G DG  R FT+ ++   +      YP +HTCFNR+DLPLY  ++ L   L   V + +ATGF  E
Sbjct:   19 LYKHMLGWPVTFSDLEHVDEEYYNSLKQLKYIE--DVSMMCLDFTTME---DTMGAKT---TVELVKGGEDIEVDNSNLPEYLEACLKYRMMGRVKPQMNELLMGFFDVIPEPLLTIFDFQELELLMCGLPVIDMDDWKEHTEYSGEYDREMENHEVCRWFWEVVEDFDQEMKARLLQFVTGTSGVPARGFGVLQGNDGNVRKFTIHSVDKQMC----MYPRSHTCFNRIDLPLYDSKDELSEKLNLAVTM-VATGFDIE 265
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BLAST of jgi.p|Trimin1|174061 vs. uniprot
Match: A0A662X6T7_9STRA (HECT domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6T7_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.300e-64
Identity = 127/270 (47.04%), Postives = 160/270 (59.26%), Query Frame = 1 
Query:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVL--ELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHTAHLGALRPTH----------RLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAAL----PPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGF 762
            L KH+LG P++  DL+F+D +LH++  WLR + GA+    +LDF+           RE   ++  EL PGG+DL VTDANK EY+ +  K K+   +  QL A+L G Y+V+P  LL VF  QELELL CG+  IDV DW AHT  +   R  H          R+V WFW+ VR   Q  RARLLQFVTGTSRVP  GF+AL   DG  R F +  +    PPA     G YP AHTCFNRLDLP+Y  RE L   L  V+ +E+ TGF
Sbjct:  123 LLKHLLGVPISFSDLEFLDAELHRHALWLRENDGAED--LSLDFTVQHQ-------REDGTIVTVELKPGGKDLPVTDANKEEYLTLLLKHKMFGGVREQLEAVLRGLYDVLPRSLLAVFDYQELELLLCGVPSIDVADWEAHT-DVRFQRINHDQRKPASTDRRVVEWFWEAVRAFSQEERARLLQFVTGTSRVPAEGFKALLSHDGRVRRFGIQLVSIGAPPA-----GLYPKAHTCFNRLDLPVYRSREELVTYLTLVINMEI-TGF 376
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BLAST of jgi.p|Trimin1|174061 vs. uniprot
Match: A0A225VJ29_9STRA (HECT E3 ubiquitin ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VJ29_9STRA)

HSP 1 Score: 222 bits (565), Expect = 4.460e-64
Identity = 127/267 (47.57%), Postives = 158/267 (59.18%), Query Frame = 1 
Query:    1 LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVAGHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLAALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHT------AHLGALRPTHR---LVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARAFTLAAL----PPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVELATGF 762
            L KH+LG P++  DL+F+D +LH++  WLR ++GAD    ALDF+         G        EL PGG+D+ VTDANK EY+ +  K K+   +  QL ALL G Y+V+P  LL VF  QELELL CG+  IDV DW +HT      A  G  +P      +V+WFW+ VR   Q  RARLLQFVTGTSRVP  GFRAL   DG  R F L  +    PPA     G YP AHTCFNRLDLP+Y   + L   L  V+ +E+ TGF
Sbjct:  473 LLKHLLGVPISFSDLEFLDAELHRHALWLRDNEGADA--LALDFTAQR-----QGNNGSIITEELKPGGKDIPVTDANKEEYLTLVLKHKMFGGVREQLEALLLGLYDVLPRSLLAVFDYQELELLLCGVPSIDVTDWESHTDIRYMRAEQGVNKPASSECLVVQWFWNAVRSFSQEERARLLQFVTGTSRVPAEGFRALLSHDGRVRRFGLQLVSIGSPPA-----GLYPKAHTCFNRLDLPVYRSYDELVTYLTLVINMEI-TGF 726
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174061 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZIB5_9STRA1.360e-186100.00HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A836CIZ9_9STRA1.080e-13575.49Ubiquitin protein ligase n=1 Tax=Tribonema minus T... [more]
A0A8K1FNP1_PYTOL5.380e-7046.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RUC3_9STRA3.980e-6949.05Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
K3X015_GLOUD6.480e-6846.18HECT domain-containing protein n=1 Tax=Globisporan... [more]
A0A2D4BKZ0_PYTIN3.400e-6747.49Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
H3GG84_PHYRM5.000e-6747.53HECT domain-containing protein n=1 Tax=Phytophthor... [more]
A0A7S1YZD2_9STRA1.180e-6646.15Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A662X6T7_9STRA1.300e-6447.04HECT domain-containing protein (Fragment) n=2 Tax=... [more]
A0A225VJ29_9STRA4.460e-6447.57HECT E3 ubiquitin ligase n=1 Tax=Phytophthora mega... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_110contigContig_110:276396..280077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174061|e_gw1.110.86.1
DescriptionHECT E3 ubiquitin ligase. Source PGD
COG categoryKO
Max annot lvl121069|Pythiales
EggNOG OGsCOG5021@1|root,KOG0939@2759|Eukaryota,1MENU@121069|Pythiales
Evalue8.23e-67
Seed ortholog42099.EPrPV00000016083
Hectar predicted targeting categoryother localisation
TranscriptId174383
TrackFilteredModels1
ProteinId174061
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174061gene_10722Tribonema minus UTEX_B_3156 geneContig_110 276396..280077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174061Trimin1|174061|e_gw1.110.86.1Tribonema minus UTEX_B_3156 polypeptideContig_110 276396..280077 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10722_4exon_10722_4Tribonema minus UTEX_B_3156 exonContig_110 276396..276711 -
exon_10722_3exon_10722_3Tribonema minus UTEX_B_3156 exonContig_110 277907..278112 -
exon_10722_2exon_10722_2Tribonema minus UTEX_B_3156 exonContig_110 278936..279065 -
exon_10722_1exon_10722_1Tribonema minus UTEX_B_3156 exonContig_110 279956..280077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10722CDS_10722Tribonema minus UTEX_B_3156 CDSContig_110 279956..280077 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10722 ID=mRNA_10722|Name=jgi.p|Trimin1|174061|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_110:276396..280077- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGTACAAGCACATCCTGGGCGCGCCCGTGACGGCGCGCGACCTGCAGTT
CGTCGACCCCAAGCTGCACAAGAACCTGGAGTGGCTCCGGAGCCACCAGG
GCGCTGACGTGAGTCGCACGGCCCTGGACTTCTCGACGATGGAGGTGGCG
GGCCACGCGCCCGGCGGGCGCGAGCGCTACGAGGTGCTGGAGCTGGTGCC
GGGCGGGCGGGATCTGCTTGTCACGGACGCCAACAAGCACGAGTACATAG
AGGTGGCGACCAAGTTCAAGCTCCTGGACCGCATCTCCGCGCAGCTCGCG
GCGCTGCTGGCGGGGTTCTACGAGGTCATCCCGCCGGGGCTGCTGGTCGT
CTTCGGGCCGCAGGAGCTGGAGCTCCTCACGTGCGGCCTCGACGTGATCG
ACGTCGACGACTGGGCCGCGCATACGGCGCACCTCGGCGCGCTGCGCCCC
ACGCACAGACTCGTGCGCTGGTTCTGGGACGTCGTGCGCGACCTCGACCA
GGCGGCGCGCGCGCGCCTCCTGCAGTTCGTCACGGGCACGTCGCGCGTCC
CGCTCGGCGGCTTCCGCGCGCTGCGCGGCGCGGACGGCGAGGCGCGCGCC
TTCACGCTCGCGGCGCTGCCGCCGGCGCTGTACGACCCGCGCGGCGCGTA
CCCGATGGCGCACACGTGCTTCAACCGCCTCGACCTGCCGCTGTACGGCG
ACCGCGAGGCGCTGCGGCGCGCGCTCGCGGCCGTCGTGCAGGTCGAGCTC
GCGACGGGGTTCGGCAAGGAGTGA
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protein sequence of jgi.p|Trimin1|174061

>Trimin1|174061|e_gw1.110.86.1 ID=Trimin1|174061|e_gw1.110.86.1|Name=jgi.p|Trimin1|174061|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=258bp
LYKHILGAPVTARDLQFVDPKLHKNLEWLRSHQGADVSRTALDFSTMEVA
GHAPGGRERYEVLELVPGGRDLLVTDANKHEYIEVATKFKLLDRISAQLA
ALLAGFYEVIPPGLLVVFGPQELELLTCGLDVIDVDDWAAHTAHLGALRP
THRLVRWFWDVVRDLDQAARARLLQFVTGTSRVPLGGFRALRGADGEARA
FTLAALPPALYDPRGAYPMAHTCFNRLDLPLYGDREALRRALAAVVQVEL
ATGFGKE*
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mRNA from alignment at Contig_110:276396..280077-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10722 ID=mRNA_10722|Name=jgi.p|Trimin1|174061|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3682bp|location=Sequence derived from alignment at Contig_110:276396..280077- (Tribonema minus UTEX_B_3156 )
CTGTACAAGCACATCCTGGGCGCGCCCGTGACGGCGCGCGACCTGCAGTT
CGTCGACCCCAAGCTGCACAAGAACCTGGAGTGGCTCCGGAGCCACCAGG
GCGCTGACGTGAGTCGCACGGCGTTTCGCATTACATCAGCGTGTCGCGCA
CTGTCTTTGCAGGATTTCCCATCGGCTCTGCAGTGTATGCATCGCTACGA
ACTGAAGTGCACGTAGCCGGTGCGTGCGGGTGCTCGCGCCTGAGGTGCGT
GCGCGCGCGTACGCGCGCGCAGCGCTACTCTGCCGTACGTGCGTCTGCGG
CGGCATGCCAAGCGGCGGTGCGCGCCGCCGCGGACACGCCTGCACGACAG
GGCGCCGAGGTGAGCGGCGCAGGTGCCGTCTGCGCACTCCATCAGCGTGC
GCTTTGGCGACAGAACCGGAGGAACCGGTGTCACGGACTGCGTACCGCGC
GAATTTCCCTAACTGACGGTGGTAAACCTGCGGCATTCACTTCACTTCAA
AGTTGAAGAGAATGGCGCATGCGAGCACCCCGTGCGGAGCTCCTCCGCGC
AGCGCTGTGCGCGCAGCAACGCGCTGCCGTCTGTGCGTCTGCGGCGCCGC
GCGCGCCGCGCGGGTCGCTGACCGAGTTGACCGCGCGAGGGCGCGGCGGC
GGCGGCGCAGGTCCTGAGCCTGGCCTTCACGGCCACGCAGGTGGCCGAAG
CCACATGCTGAGCTCTGCGTCAGGCAATCCATGATATGTGACAGCTGACC
GTGTTGACGGCGAGCGGAGGTGGCGCTGGGCCTGAGCCTGGACTTCACGA
CCATGGAGGTGGCGGCGCACGCCATATGCTGAGCTCTGCTTTAGGCTGAG
CTCTGCTTCAGGCACTTGGTGATGTGCGACAACTGACCGCGTCGACCGCG
CATGCAGCCGCATGCTGAGCGCCGCTTCAGCATCAGACGCAACTGTACTC
ATTCCGCAACTGACCGTGCTGATCACGCGCACGGCGGCGGCGGCGGCGGC
GCAGGTGCTGAGCCTGGACTTCTCGACGATGGAGGTGGCGGGCCACGCGC
CCGGCGGGCGCGAGCGCTACGAGGTGCTGGAGCTGGTGCCGGGCGGGCGG
GATCTGCTTGTCACGGACGCCAACAAGCACGAGTACATAGAGGTGACGCT
CTGCGTGTGAAAAAAGTTGAATTTTTGTGGAAGATGGGTGCGAGCGCTAC
GACGTGCCGGAGCTGGTGCCGGGCGGGCGCGATCTGCTCGTCACGGACGC
CGACGAGCACGAGTACACGGACGGTGACGCTCCGCGTGCAAATACAAGTT
GAAGTTATGTAAAAAGTTGAAGGCATGTGAGAAACGGACGCGCGCGTGCG
CCTCCTCCTGCAGTTGGGGGGTGCGGTAGCGTTTCACGTCAGAGTGACCG
GACTGCAGCTTGCGTGAGGGGGTGCGCGCGTGCTTGCGCGCGGCTGGCGG
ATGCGGGGTCAGGGTTAGGGTTAGGGTTAGGTTGCGGCCGACCGCCATGA
CAAGGCGGCGGCGCGTATAGCGTTCGTCGTTTCATTTGATGTTTCACTGA
GGGCGCGACAAAGGCCAGCGCTCGCAGCTGCGAGCTCGCACTTCTGAATG
AACGCGCGCAGCCATGGCGGCCACGCTTCATCGCCCAGTACTTGTCAGTG
CAGCTTTGCCGTGCGCCGCGTGTACCGGCGCTGGCGCAGCAGTTGCCGTC
CCCCGTGGTTCTCTCGCGGAAAATGGACTCGACCGAGTCGACCCACACAG
CAGTGTGGATGCCGCAGCGCCACCTTATGTCGTCAACAGCGCGGGCGTTC
GGGGCGGCAGAGGTATGCTGACCCCCCCCCCCCTCTCCCCAAGCAGACAA
ACACACGCTCACCCCCCCCCCCCCCCCCTCTCCTCAATCAATCAAAACAC
ACACTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCGCTCGCG
CCTCTCGCACTGCAGGTGGCGACCAAGTTCAAGCTCCTGGACCGCATCTC
CGCGCAGCTCGCGGCGCTGCTGGCGGGGTTCTACGAGGTCATCCCGCCGG
GGCTGCTGGTCGTCTTCGGGCCGCAGGAGCTGGAGCTCCTCACGTGCGGC
CTCGACGTGATCGACGTCGACGACTGGGCCGCGCATACGGCGCACCTCGG
CGCGCTGCGCCCCACGCACAGGTACCGCGCAGCGACCTCCGCTGCCTCGT
TGCGGTGAGGCTCGGGGTTGTGGCCTGCTCTCTCACGTACTTGATGAGTA
GCACGCGGCGCCGAGAGGAACCTTCGGTAACAAGTAGTCTCCTAGCCCGA
GCAACACAAGGGCGCAGGCTACGTAATCTTCAGCAGTTGCTACTGCGGTT
TGCACGTGTGCGGTCGTGGCGATGATGACGTCAACGGCTGCGTCTTGGGA
CGCGAAGAGAGGCCCTCCTCGGCGCGCTGCGCCCTACGCACAGGTCTGCC
GCGCACGCGGCGCCGGGCGCGCGCACGCTCCGCACTCATCCTCAGCAGTC
AGTGTCTCGCTCGCCGTTGTCGCTGTGACGCAAGTGGCGCAAGCGCGGCT
GTGGCGACTCTGGCGTTGACTCGACGGCTGGGTCGCGAGCAACGGTCCGC
CTCGGCGCGCTGCGCCCCGCGTGCAGGCGCGGCAGAGCGGCGCTGACAGG
GCGCGCAGCGCTGCGCAATCCCCCCCTCTATTCCCCGACAGCGGTTCGCT
CGCGCTGTGCACCTCGTGGGTTGCGCCTGTGCGGTCTCGGCGCTGCTGAC
GTGACAGCTGGGCCGCGGAAAAGGCGCGCCTGGGCATGCTGCACCCCACG
CGCACTCGCGTTTTTGCCACCGGACAGTGCGTGGGATCCGCCTTCCGCAT
TGCAACGGCGCGACTCGCACCTTGACCATGACTTCAACACCAGCTGTCTG
TACACACGCGACGGATGATGCCAGTTCTGAAGCGGACATTAAGTGGCTTA
CAAAGTCGCGGGCTGCTGACCCTAGCACTAGGTTTTGCGCGCAGCGCTCG
CAAAGCAGCGCGGCCATCCCTCGCACGCCACCCTCCATCGCGACCGAGAC
TTCGTCTGTGAAACAAGCGGGGGCGCGGCGCGTGCTCGCGCTCGGAACGC
CTGTTTGCCCCTCTCGTGTGGGGTGCGGGAAGGCACGCGATGGCGGTGAT
GCACTACACCAAACACCAGGTGTGCTGTGCAAATAAGGTTGTGGCAAGTC
TCCTCTGAGAGAGTGGCATGCATCACCCCGGGCGCGACCTTTCATGAACG
CCGCCGGCGCGCGCCCCGATGTTTTTCGTACGGCACGCTCGCGTGCTGTT
TTCAGGAGACTTCTCACCCCCATGAAACCGCTGCACCACGCGCTCCCCCC
CCCCCCCCCCCGGCAGACTCGTGCGCTGGTTCTGGGACGTCGTGCGCGAC
CTCGACCAGGCGGCGCGCGCGCGCCTCCTGCAGTTCGTCACGGGCACGTC
GCGCGTCCCGCTCGGCGGCTTCCGCGCGCTGCGCGGCGCGGACGGCGAGG
CGCGCGCCTTCACGCTCGCGGCGCTGCCGCCGGCGCTGTACGACCCGCGC
GGCGCGTACCCGATGGCGCACACGTGCTTCAACCGCCTCGACCTGCCGCT
GTACGGCGACCGCGAGGCGCTGCGGCGCGCGCTCGCGGCCGTCGTGCAGG
TCGAGCTCGCGACGGGGTTCGGCAAGGAGTGA
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Coding sequence (CDS) from alignment at Contig_110:276396..280077-

>mRNA_10722 ID=mRNA_10722|Name=jgi.p|Trimin1|174061|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=774bp|location=Sequence derived from alignment at Contig_110:276396..280077- (Tribonema minus UTEX_B_3156 )
CTGTACAAGCACATCCTGGGCGCGCCCGTGACGGCGCGCGACCTGCAGTT
CGTCGACCCCAAGCTGCACAAGAACCTGGAGTGGCTCCGGAGCCACCAGG
GCGCTGACGTGAGTCGCACGGCCCTGGACTTCTCGACGATGGAGGTGGCG
GGCCACGCGCCCGGCGGGCGCGAGCGCTACGAGGTGCTGGAGCTGGTGCC
GGGCGGGCGGGATCTGCTTGTCACGGACGCCAACAAGCACGAGTACATAG
AGGTGGCGACCAAGTTCAAGCTCCTGGACCGCATCTCCGCGCAGCTCGCG
GCGCTGCTGGCGGGGTTCTACGAGGTCATCCCGCCGGGGCTGCTGGTCGT
CTTCGGGCCGCAGGAGCTGGAGCTCCTCACGTGCGGCCTCGACGTGATCG
ACGTCGACGACTGGGCCGCGCATACGGCGCACCTCGGCGCGCTGCGCCCC
ACGCACAGACTCGTGCGCTGGTTCTGGGACGTCGTGCGCGACCTCGACCA
GGCGGCGCGCGCGCGCCTCCTGCAGTTCGTCACGGGCACGTCGCGCGTCC
CGCTCGGCGGCTTCCGCGCGCTGCGCGGCGCGGACGGCGAGGCGCGCGCC
TTCACGCTCGCGGCGCTGCCGCCGGCGCTGTACGACCCGCGCGGCGCGTA
CCCGATGGCGCACACGTGCTTCAACCGCCTCGACCTGCCGCTGTACGGCG
ACCGCGAGGCGCTGCGGCGCGCGCTCGCGGCCGTCGTGCAGGTCGAGCTC
GCGACGGGGTTCGGCAAGGAGTGA
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