mRNA_10720 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174146
Unique NamemRNA_10720
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174146 vs. uniprot
Match: A0A835ZNH9_9STRA (Hemolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNH9_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.560e-87
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 
Query:    1 MEPWEVSALLLAERAAAEEAELSQYDERGQEEXXXXXXXXXXXXXXXXXXXXPSLAPDHDDDPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAGIHKK 435
            MEPWEVSALLLAERAAAEEAELSQYDERGQEEXXXXXXXXXXXXXXXXXXXXPSLAPDHDDDPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAGIHKK
Sbjct:    1 MEPWEVSALLLAERAAAEEAELSQYDERGQEEXXXXXXXXXXXXXXXXXXXXPSLAPDHDDDPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAGIHKK 145
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BLAST of jgi.p|Trimin1|174146 vs. uniprot
Match: A0A7S1U9Q3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Q3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 8.660e-38
Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:  169 PDHDDDP-IKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAGIHKK 435
            PD +D+  +  A++G ++ YKREISP + PACRF PTCS Y+++SI+ +G W+G VLTAWR+LRC P GG GYDPPQWPPP WFAG  KK
Sbjct:   63 PDEEDESELSRALMGAVRWYKREISPSMAPACRFLPTCSGYSIDSIKTYGPWKGLVLTAWRILRCNPFGGSGYDPPQWPPPGWFAGTGKK 152
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BLAST of jgi.p|Trimin1|174146 vs. uniprot
Match: D8LF53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF53_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 3.500e-37
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:  190 IKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAG 423
            + AAMI FIKAYK+E+SPL+PPACRF PTCSVY V++IE+FG  +G VLTAWRL+RC P  GYG D PQWPPP WFAG
Sbjct:   75 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 152
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BLAST of jgi.p|Trimin1|174146 vs. uniprot
Match: A0A4D9DFE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFE3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.900e-35
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:  184 DPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAG 423
            D   A +I F + YKR ISPLLP ACRFFPTCS YA+ES+++FG  +G VLTAWRLLRC P+GG G+DPPQWPPP W AG
Sbjct:   62 DTTSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 141
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BLAST of jgi.p|Trimin1|174146 vs. uniprot
Match: W7TML8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TML8_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.440e-33
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:  184 DPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAG 423
            D   A +I F + YKR ISPLLP ACRFFPTCS YA+ES+++FG  +G VLTAWRLLRC P+GG G+DPPQWPPP W AG
Sbjct:  160 DASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239
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BLAST of jgi.p|Trimin1|174146 vs. uniprot
Match: A0A7S0GAD0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAD0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.580e-31
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:  172 DHDDDPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAGIH 429
            D  +DP+  +M+  I  YK+ ISPLLPPACRF PTCS Y V +IEEFG  +G VLTAWRLLRC+PVGG GYDPP+WPP  +  G +
Sbjct:   92 DKTNDPMSFSMVASIGFYKKIISPLLPPACRFLPTCSQYGVGAIEEFGPGKGAVLTAWRLLRCSPVGGRGYDPPKWPPVAYTYGSY 177
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BLAST of jgi.p|Trimin1|174146 vs. uniprot
Match: A0A7S2R8H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8H5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.200e-30
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  172 DHDDDPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPP 405
            D   +P+   M+  I  YK  ISPLLPPACRF PTCS Y V++IEEFG  +G VLTAWRLLRC+P GG GYDPP+WPP
Sbjct:   57 DKHKNPVSIGMVATIGVYKNVISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVVLTAWRLLRCSPFGGKGYDPPKWPP 134
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BLAST of jgi.p|Trimin1|174146 vs. uniprot
Match: A0A7R9WPG5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WPG5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.700e-30
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:  172 DHDDDPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPP 405
            + D  P+ +AM+  I  YK  ISPLLPPACRF PTCS Y V++I+EFG  +G VL AWRLLRC+PVGG GYDPP+WPP
Sbjct:   52 EDDKKPLSSAMVATIGVYKNFISPLLPPACRFVPTCSQYGVQAIKEFGPTKGCVLIAWRLLRCSPVGGKGYDPPKWPP 129
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BLAST of jgi.p|Trimin1|174146 vs. uniprot
Match: A0A7S0NJP1_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NJP1_MICPS)

HSP 1 Score: 113 bits (282), Expect = 1.090e-29
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:  172 DHDDDPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAG 423
            D  D P+ A  +  I+ Y+ +ISPL PPACRF PTCS YAV++   FGA +G  LTAWRL RCTP GG GYDPP+WPP  + AG
Sbjct:   10 DRADGPVVALALALIRFYRTQISPLTPPACRFVPTCSQYAVDAFRTFGAGKGAALTAWRLARCTPFGGKGYDPPRWPPVAFNAG 93
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BLAST of jgi.p|Trimin1|174146 vs. uniprot
Match: B7FQ10_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ10_PHATC)

HSP 1 Score: 111 bits (277), Expect = 2.400e-29
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:  190 IKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPP 405
            +  AMI  I  YK+ ISPLLPPACRF PTCS Y V++I+++G+ +G +LTAWRLLRC+P+GG GYDPP+WPP
Sbjct:    1 MSTAMIASIGFYKQVISPLLPPACRFVPTCSQYGVQAIQQYGSGKGAILTAWRLLRCSPIGGKGYDPPKWPP 72
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174146 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZNH9_9STRA1.560e-87100.00Hemolytic domain-containing protein n=1 Tax=Tribon... [more]
A0A7S1U9Q3_9STRA8.660e-3861.11Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
D8LF53_ECTSI3.500e-3771.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9DFE3_9STRA6.900e-3567.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TML8_9STRA1.440e-3367.50Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S0GAD0_9STRA2.580e-3161.63Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2R8H5_9STRA2.200e-3064.10Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9WPG5_9STRA2.700e-3064.10Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S0NJP1_MICPS1.090e-2958.33Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
B7FQ10_PHATC2.400e-2963.89Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_110contigContig_110:268686..269784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174146|e_gw1.110.12.1
BRITEko00000
KEGG koko:K08998
DescriptionHaemolytic
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0759@1|root,2S1FR@2759|Eukaryota
Evalue5.73e-38
Seed ortholog2880.D8LF53
Hectar predicted targeting categoryother localisation
TranscriptId174468
TrackFilteredModels1
ProteinId174146
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174146gene_10720Tribonema minus UTEX_B_3156 geneContig_110 268686..269784 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10720_1exon_10720_1Tribonema minus UTEX_B_3156 exonContig_110 268686..269024 +
exon_10720_2exon_10720_2Tribonema minus UTEX_B_3156 exonContig_110 269686..269784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10720CDS_10720Tribonema minus UTEX_B_3156 CDSContig_110 268686..269024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174146Trimin1|174146|e_gw1.110.12.1Tribonema minus UTEX_B_3156 polypeptideContig_110 268686..269784 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10720 ID=mRNA_10720|Name=jgi.p|Trimin1|174146|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_110:268686..269784+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCTTGGGAGGTATCTGCTCTGCTGCTAGCAGAGAGAGCAGCTGC
CGAGGAAGCAGAGCTATCGCAGTATGACGAGCGAGGACAGGAGGAAGCGC
AATCAGAGCAGCAGCAGGAGCAGCGACAGCAGCAGCACCAATCAGCGGAG
CGGTCGCCCTCGCTGGCTCCTGATCATGATGACGACCCAATCAAGGCAGC
CATGATTGGGTTCATCAAGGCATACAAGAGAGAAATATCGCCTCTGCTGC
CACCGGCGTGCAGGTTCTTTCCGACTTGCAGTGTCTACGCCGTGGAGAGC
ATAGAGGAGTTCGGCGCGTGGCGGGGCTTTGTCCTCACGGCGTGGCGGCT
GCTCAGGTGCACTCCCGTGGGGGGCTATGGCTACGATCCCCCTCAGTGGC
CCCCGCCGAACTGGTTCGCTGGCATCCACAAGAAGTAG
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protein sequence of jgi.p|Trimin1|174146

>Trimin1|174146|e_gw1.110.12.1 ID=Trimin1|174146|e_gw1.110.12.1|Name=jgi.p|Trimin1|174146|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp
MEPWEVSALLLAERAAAEEAELSQYDERGQEEAQSEQQQEQRQQQHQSAE
RSPSLAPDHDDDPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVES
IEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAGIHKK*
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mRNA from alignment at Contig_110:268686..269784+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10720 ID=mRNA_10720|Name=jgi.p|Trimin1|174146|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1099bp|location=Sequence derived from alignment at Contig_110:268686..269784+ (Tribonema minus UTEX_B_3156 )
ATGGAACCTTGGGAGGTATCTGCTCTGCTGCTAGCAGAGAGAGCAGCTGC
CGAGGAAGCAGAGCTATCGCAGTATGACGAGCGAGGACAGGAGGAAGCGC
AATCAGAGCAGCAGCAGGAGCAGCGACAGCAGCAGCACCAATCAGCGGAG
CGGTCGCCCTCGCTGGCTCCTGATCATGATGACGACCCAATCAAGGCAGC
CATGATTGGGTTCATCAAGGCATACAAGAGAGAAATATCGCCTCTGCTGC
CACCGGCGTGCAGGTTCTTTCCGACTTGCAGTGTCTACGCCGTGGAGAGC
ATAGAGGAGTTCGGCGCGTGGCGGGGCTTTGTCCTCACGGTGAGCAGCTG
CGTAGAATGTTGACAGAGGGCTTGTGGAGTACACGCGACAGTCAGCCGCT
TCTGTTAATCCCCAGTTATGGGGTTGAATTGTGCTGCCACCATGGTTGGC
AAACAACCCTGAGCAGTATCTCGTCGCGAGCCTGCTTGCAGCCGCCGCTG
TTGTTCCTTGTTCGTGGGCTGCAGCCCGCGCCGCCAAATGGACTGGCTTA
CAATTCTGCGCACTGTTTTGCCATCGTCCTGCTTTTACACGCGTGTCCAG
CCACCGCCGCATGTACTCTGAGCACTGCTGCGCTGCTCTAACGTCTGCGT
GCCATCAGTAAGTGCCGCGATGATCGCCGCCTCGTGCCACCGCAACGGCA
CGTGCAGCATGCCAAGTGTACTGCGCAATAGCTTGGCCGAGTACCGTGAA
CAGCTGGTCTTTGTCACCTGTTCAGCTTCTGCAGTCGTCATCAAGCAGCA
CTGCGGATGCGTGGGCCCCTGCACATGCTTGATCTTGAACCAACAGCGAC
GCGCTGACTGCTCATTGGCATCTTCCGTTGACAGTCGCCTCAGCGAAGGT
GCTTCATTGCGCATCAAAATCCTACCGTCATGTCGCCTGGCTCATTAGCT
TTCCATGCCCTGCTGCCAATGGCCTGCCATGCTGCTGCTGCTGCCCGCAG
GCGTGGCGGCTGCTCAGGTGCACTCCCGTGGGGGGCTATGGCTACGATCC
CCCTCAGTGGCCCCCGCCGAACTGGTTCGCTGGCATCCACAAGAAGTAG
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Coding sequence (CDS) from alignment at Contig_110:268686..269784+

>mRNA_10720 ID=mRNA_10720|Name=jgi.p|Trimin1|174146|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_110:268686..269784+ (Tribonema minus UTEX_B_3156 )
ATGGAACCTTGGGAGGTATCTGCTCTGCTGCTAGCAGAGAGAGCAGCTGC
CGAGGAAGCAGAGCTATCGCAGTATGACGAGCGAGGACAGGAGGAAGCGC
AATCAGAGCAGCAGCAGGAGCAGCGACAGCAGCAGCACCAATCAGCGGAG
CGGTCGCCCTCGCTGGCTCCTGATCATGATGACGACCCAATCAAGGCAGC
CATGATTGGGTTCATCAAGGCATACAAGAGAGAAATATCGCCTCTGCTGC
CACCGGCGTGCAGGTTCTTTCCGACTTGCAGTGTCTACGCCGTGGAGAGC
ATAGAGGAGTTCGGCGCGTGGCGGGGCTTTGTCCTCACGGCGTGGCGGCT
GCTCAGGTGCACTCCCGTGGGGGGCTATGGCTACGATCCCCCTCAGTGGC
CCCCGCCGAACTGGTTCGCTGGCATCCACAAGAAGTAG
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