mRNA_10715 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352146
Unique NamemRNA_10715
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352146 vs. uniprot
Match: A0A835ZEX8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX8_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.460e-83
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 2 
Query:   89 MKAAGVISIALAAAAPVSGFVAPSSRSWCQQHTAVALRPVLSMKWDGKSEPKKNPLLEQLAADASWDRQNDRVEVWEDKPNPTFDWISAYLPTDEEREAAAAGYDFANPEAWLEKQKAKDSQAQT 463
            MKAAGVISIALAAAAPVSGFVAPSSRSWCQQHTAVALRPVLSMKWDGKSEPKKNPLLEQLAADASWDRQNDRVEVWEDKPNPTFDWISAYLPTDEEREAAAAGYDFANPEAWLEKQKAKDSQAQT
Sbjct:    1 MKAAGVISIALAAAAPVSGFVAPSSRSWCQQHTAVALRPVLSMKWDGKSEPKKNPLLEQLAADASWDRQNDRVEVWEDKPNPTFDWISAYLPTDEEREAAAAGYDFANPEAWLEKQKAKDSQAQT 125
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BLAST of jgi.p|Trimin1|352146 vs. uniprot
Match: A0A836CII1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII1_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.960e-41
Identity = 75/103 (72.82%), Postives = 84/103 (81.55%), Query Frame = 2 
Query:  116 ALAAAAPVSGFVAPSSRSWCQQHTAVALRPVLSMKWDGKSEPKKNPLLEQLAADASWDRQNDRVEVWEDKPNPTFDWISAYLPTDEEREAAAAGYDFANPEAW 424
            AL A  P   FVA S   WC+ H++ +  P LSMKWDGKSEPKKNPLLE+L+ADASWDR+NDR EVWED+PNP FDWISAYLPTDEEREAAAAGYDF +PE W
Sbjct:   12 ALLALLPAHAFVATS---WCRAHSSCSRSPALSMKWDGKSEPKKNPLLEKLSADASWDRENDRKEVWEDEPNPNFDWISAYLPTDEEREAAAAGYDFNDPEGW 111
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BLAST of jgi.p|Trimin1|352146 vs. uniprot
Match: A0A6V1PLK3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PLK3_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 1.320e-22
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 2 
Query:  200 RPVLSMKWDGKSEPKKNPLLEQLAADASWDRQNDRVEVWEDKPNPTFDWISAYLPTDEEREAAAAGYDFANPEAWLEKQK 439
            R  + MKW G   PK NP  ++L  DASW R ++RV+V+EDKPNPT+ W   Y PT+EE EAAA GYDF NPE WL + K
Sbjct:   40 RSNMVMKWPGDRPPKTNPKRKELLMDASWARADERVDVFEDKPNPTYPWWETYFPTEEEIEAAAQGYDFENPEKWLAENK 119
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352146 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZEX8_9STRA1.460e-83100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CII1_9STRA3.960e-4172.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1PLK3_HETAK1.320e-2256.25Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_110contigContig_110:233659..238012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352146|estExt_Genemark1.C_Ctg_1100033
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001450.1
TranscriptId352468
TrackFilteredModels1
ProteinId352146
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352146gene_10715Tribonema minus UTEX_B_3156 geneContig_110 233659..238012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352146Trimin1|352146|estExt_Genemark1.C_Ctg_1100033Tribonema minus UTEX_B_3156 polypeptideContig_110 233791..237723 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10715_4exon_10715_4Tribonema minus UTEX_B_3156 exonContig_110 233659..233905 -
exon_10715_3exon_10715_3Tribonema minus UTEX_B_3156 exonContig_110 236379..236473 -
exon_10715_2exon_10715_2Tribonema minus UTEX_B_3156 exonContig_110 237556..237734 -
exon_10715_1exon_10715_1Tribonema minus UTEX_B_3156 exonContig_110 237936..238012 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10715UTR3_10715Tribonema minus UTEX_B_3156 three_prime_UTRContig_110 233659..233790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10715CDS_10715Tribonema minus UTEX_B_3156 CDSContig_110 237556..237723 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10715UTR5_10715Tribonema minus UTEX_B_3156 five_prime_UTRContig_110 237936..238012 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10715 ID=mRNA_10715|Name=jgi.p|Trimin1|352146|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=598bp|location=Sequence derived from alignment at Contig_110:233659..238012- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGAAGCTGAAGAAGAAGCTGCTGTTGTGCTGATTGCTGCACGCGACAAG
GCGCTGCTGCGGCTCGTTCCAGCAAAGGAAGGAGGACCATGAAGGCAGCA
GGTGTCATATCGATTGCCTTGGCGGCGGCTGCGCCAGTGAGTGGATTTGT
GGCGCCTTCCAGCAGATCCTGGTGTCAGCAACATACTGCAGTCGCCCTGC
GACCAGTGCTGAGCATGAAATGGGATGGGAAGAGCGAGCCGAAGAAAAAC
CCTCTGCTGGAGCAGCTCGCGGCGGATGCCAGCTGGGATAGGCAGAACGA
CAGGGTGGAGGTGTGGGAGGACAAGCCAAACCCGACGTTCGACTGGATCT
CCGCGTACCTGCCCACGGACGAGGAGCGCGAGGCAGCGGCAGCGGGGTAC
GACTTTGCCAACCCGGAGGCGTGGCTGGAGAAACAAAAGGCCAAGGACAG
CCAGGCACAGACATAGACAGATGGGGGGAACCATCACAGCCTGTCATAGG
CGGGGGAGGGGGGGGGTATGCTGCGCCATATTTTCATGGATCAACACACA
CAGCAGCCCAACAAAAATGATTTTTTGGGGGAGGGAGGGGGGGGCACA
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protein sequence of jgi.p|Trimin1|352146

>Trimin1|352146|estExt_Genemark1.C_Ctg_1100033 ID=Trimin1|352146|estExt_Genemark1.C_Ctg_1100033|Name=jgi.p|Trimin1|352146|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
MKAAGVISIALAAAAPVSGFVAPSSRSWCQQHTAVALRPVLSMKWDGKSE
PKKNPLLEQLAADASWDRQNDRVEVWEDKPNPTFDWISAYLPTDEEREAA
AAGYDFANPEAWLEKQKAKDSQAQT*
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mRNA from alignment at Contig_110:233659..238012-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10715 ID=mRNA_10715|Name=jgi.p|Trimin1|352146|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4354bp|location=Sequence derived from alignment at Contig_110:233659..238012- (Tribonema minus UTEX_B_3156 )
AAGAAGCTGAAGAAGAAGCTGCTGTTGTGCTGATTGCTGCACGCGACAAG
GCGCTGCTGCGGCTCGTTCCAGCAAAGGTAAAGGCAAAAACTCATCAGTT
TGCAAGTCAGCGAGCCTCAAGTGCTTCTCAGCATGCCGCACCTCGTGACC
GCATTGGCCGTGGCGATGGCGATATGGCGTGCCTGCGCGCTGCACTCGCC
AACTATGCTCAGAATGGCGTCCGGCTGCTGGTCTCTCACTCACTTCTGGA
CGCACACTTGCTGACTCTGCCTGTGCAGGAAGGAGGACCATGAAGGCAGC
AGGTGTCATATCGATTGCCTTGGCGGCGGCTGCGCCAGTGAGTGGATTTG
TGGCGCCTTCCAGCAGATCCTGGTGTCAGCAACATACTGCAGTCGCCCTG
CGACCAGTGCTGAGCATGAAATGGGATGGGAAGAGCGAGCCGAAGAAAAA
CCCTCTGGTGCGTGCTGATTTGCTTCCGCCCATCTACTGCTGTAGTACAC
AGAACATCATGTCGCGTTGCGCAAGTAGCTGTTTGCGTCTTGTTTGCTGC
TCAAAGTTCGACGCAAGATCAAAGGTGGCAGATCTGCTGCTCACGGTCAG
CGGTTCGGTGTCAGTCAAGAAGCCTGACACGCGGCGTACAACCTGCTTTC
GTAGGTTGGCGGTCTGCCAGAGGCGCAGCGCTCAGTTTGTTTATCGTCAA
CTGTGCCTGTCAAACAACTTCAATGCCTGTTTTTCACCTCTATGTGGGTG
TGTGAGTTGATGTGGCGAGCAAATTAGCATGCAGCAAGCGAGGTGCTTTC
TTTGATGCAAGCGATAGGCTGCCTCGATGCGCAGTTGATCGTGTAATTCG
GTTATTTGATCAGTCAAACCTTGTTTGTGATGCAGCGCTAGTTGGCATCA
TTCTACATTTGTGTGGACCCATAGCACAACTTGTAGTCAATACACCAATT
GCCTTGTGATTGCATGAGCAATCCATGGGAGGCTGCCTTATTCACACATC
TGATACAAGTGGATGCAATAGCATCTGTAACCGCTGAGTGGAAGTGCGCG
CATGCCAATTTTGGCTGCGCGCAAATACTGCACCGAGTCAACATCACATG
TTCGCATGCGTGAAGCACTCACGCAGCGAAATTATCAAAAGTACATTGTT
TCAGACGGTGCGCTTGTGATAACAATGTAGCTGTCTGCAGCACCACGTTT
ACAACCTGATTGGCAAACGCGCTGCTGACCACGAGAGGTTCCCGACTGAG
CACTGTAGCAAGAAAATGAACATGCCCGCCAAGCTGAACCCTGCTGACGC
ACCGATTTGCACTGGCGACGTTCATGGCGAGTCAATTTTCCAACAGCTCT
GCTGTTCTGTCTTGGCGCCTGCGTATGAATCTAGTAGCAGTGCAGCCGTT
ATATTGAAGTTCCAAAGTCAACACCCACGAGCTACGATACTGACTGCGGC
TGCTGACTTGGAAACTGCCAGTACAACCAGAGTCATGACAAAGAGCATTG
TCGGCGTGCTGTGCTGTTGCGGTGATTGCGGCTCCACAGCTGGAGCAGCT
CGCGGCGGATGCCAGCTGGGATAGGCAGAACGACAGGGTGGAGGTGTGGG
AGGACAAGCCAAACCCGACGTTCGACTGGATCTCGTGAGTGCCCGCTCCC
CTGGATTCTTGTGCTGTAACGCTCATTTCGGTACAAACTCATTTCAGCAG
CTGCCGCCGTCATGATGCCAGTGCTGTACTCGCCACTGGCAGGAGGACAA
GCCAAACCCAACGTTCGACTGGATCTCGTGAGTGCCCGCTCCCCTGGATT
CATGTGCTGCGACGCTTATCTTAAGCCAGAACTTTCCTGTGGCACTTTGT
GGAGTCTTGTCGTGCTGCAACGTTGATGCAGGAATAGAACCTTTCTGTTC
CACAATGTGCGGCAACGGCCGCAGTGTAGTGATGCCATGCTTGTCGACGG
CAACCGCGCCCACGTCATCCCATGCATGGCTGGTGCACGCCACGGCCACG
ATGGGTTACTGCTCAGGCACAGCAGCAGCGTTTACTGCAAGTTGCACGTT
TTCGGGCGGCAACCTGTCGCGCGACGTGTTGGGCACGCACCGTGCTCGGC
TTTATGAAATGTGTTGGGTATGCCAAGTTGCCTACTTGAAGCGTTTCTTG
ACAGCAGATTCTTGGGGGACGATCAGGATATGATACAGCTGCGGCCTTGC
AGTGAGCCAAGATTTCACAGTCAGCCAAGGTTTCGCAGTCAGCCAAGGCT
TGTACACGAAAAGGTGAAACTGGCGGTTGAAAGCAGCAGCACTTTATGCG
ACTGCATATACCAGTATAATTTCAAAGTGAGTGCAGAGCAGCGCAAGCAT
GCCTCCTGTGGCCAGTTTGTTGCCTTTTATGTTAGCGCTTGACCACCAGC
AAGCCAAAACCTGCACTCTCCGATTGGTGGTCTGGGAAATTATGTAGGTT
GCGGATGACTTGCAGCTTTATTTTGTTGAAATGACTGTGGTTGTTCGACG
ACACTGGTAGTACACAGGACCAAACAAGAAGGTATTGCATACGGCAACGC
CAGTCACAACTGGCCCATTTTGCCTTGTCAACATGATGGCAAAACGGGCC
ATGTACCTCTGCTGTGAGCATGAAGGGGTGCTTTGAAGTTAGCAGGCTGC
AGCTGAGCTTGCATACCATGGCTGTATTTGTGCCTGAAGGTACAGCTGTA
ACTTACAGCCTATGCGGTAGCGCAAGAGAGCAGTTGATATTCTCACGTTT
TCAATAATCAATACACAGTTCCTTTGTTCTGTAGATGGTGGTGCACTGTG
TACCTGCAGCTCTCTGCAGTACAGGCATGTCAGATTCGTACATCCGCTCT
ATACACTTGCACTGGCACTTCGAAGCACGCCTTTGAAGTTGCAGTTTGAT
GCTCCAAAGGCACCTGTGCTCGTCTGTCCAGCAGATCAGCAACTGTCAAC
TGTTCTGTTATCGTGAAGGCATACCTGCCCATGAATGGGGAGCTGGTATA
CAGATGCCATGCGCGGGCATATGGTACCTTACATGGTTATAGCACTGAAC
AACACGCCTTGTAAGCCCCTTGTAGATGATGCGTGACATGTGATGTCAAA
ACGCTCAACGTGTGTCATTCTACGCACTGGGCATGAAACCAGGAAGGAGC
AAAATGGCTCAAAAGTGCTTACGCGAGAACTACCTAATTAAGACAAGTAC
AAAGGTACCTGAGCGAGAATGAATGTATTGTGAAAAGTGCATGGTTGACA
AGCTTTGACGGCAAGTCACGTGCACGTGATCACCCAACAACCAGTAGTAG
TGCTACCGCTGTTCTCGTGTGCTTCCCGTGCTAATAATGCAAAGAGGCCA
CAACACGCGTGATGCAATGGTAAACTTCCGCCTGCGTTCTGGCGACCCCT
GACACGGCACAGTGTGAACTACTATGTACTGTGAAACTAATAATCACTAG
GGCTAGCCTAGGGTTTACCACATGGCATACCTGAGCGATTGCAATTCGAC
GGGCCGTGAACGCTGGGACGTACCGAGACGCCGTGACCGTCTCCTCATCA
AGGCGCATCACAGACGTGTAGATCTAGCGAAGGGCTTTATAATTAGGGTA
CAGACGGGTTAGGCCTAACCCTAACCCTAACTCTGCTGGTCACCTTCGGG
CACTTCCTCTCTCCCCTACCCGTAGCCAAATTCCTCTCTTCGCACACCTT
AAAAAACGTGCCCCACTCTCTTCCAGTGGTCCGAGAGAGGGAGCATGACC
ACCGCGTGCGTGAGGGACTGCCCTGCCGTCTGGTAGTGCTTTTCCCACAT
CCACAGCTGCGCTTTGGAGAAGATGTCTACTGCGCGGCGCAGGGTGCTGG
CCTCCATCCGCACTTCTACCCTGTAAGATAATTCGAAATCGTCCCCTAAT
TATTAGTGTCACAGTAGTATGCCCTTGATGTGCATTCAATTCAGCCCGTT
ACACACTCTTGACTATCACGTGATTGTGGAGCGATTGACATTTGCACACG
AAGTAGGGAGGGCGCAGAAGTGATATTCGCGTTCACCGTGACAGGTGTGC
AGTGCTCAAATGTAGTATACTGCAACTCATCAACTTCACTTTCATGCCGT
CCTGCAGCGCGTACCTGCCCACGGACGAGGAGCGCGAGGCAGCGGCAGCG
GGGTACGACTTTGCCAACCCGGAGGCGTGGCTGGAGAAACAAAAGGCCAA
GGACAGCCAGGCACAGACATAGACAGATGGGGGGAACCATCACAGCCTGT
CATAGGCGGGGGAGGGGGGGGGTATGCTGCGCCATATTTTCATGGATCAA
CACACACAGCAGCCCAACAAAAATGATTTTTTGGGGGAGGGAGGGGGGGG
CACA
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Coding sequence (CDS) from alignment at Contig_110:233659..238012-

>mRNA_10715 ID=mRNA_10715|Name=jgi.p|Trimin1|352146|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_110:233659..238012- (Tribonema minus UTEX_B_3156 )
ATGAAGGCAGCAGGTGTCATATCGATTGCCTTGGCGGCGGCTGCGCCAGT
GAGTGGATTTGTGGCGCCTTCCAGCAGATCCTGGTGTCAGCAACATACTG
CAGTCGCCCTGCGACCAGTGCTGAGCATGAAATGGGATGGGAAGAGCGAG
CCGAAGAAAAACCCTCTGCTGGAGCAGCTCGCGGCGGATGCCAGCTGGGA
TAGGCAGAACGACAGGGTGGAGGTGTGGGAGGACAAGCCAAACCCGACGT
TCGACTGGATCTCCGCGTACCTGCCCACGGACGAGGAGCGCGAGGCAGCG
GCAGCGGGGTACGACTTTGCCAACCCGGAGGCGTGGCTGGAGAAACAAAA
GGCCAAGGACAGCCAGGCACAGACATAG
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