mRNA_10709 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Match: A0A835ZGK4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGK4_9STRA) HSP 1 Score: 553 bits (1424), Expect = 1.590e-198 Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1
Query: 1 MQSHRAGAAEAXXXXXXXXXXXXXXXAINSSDQQVTLTPQSAEHDDADDTQASHEWAPASPVPSEGTHGTVLREEGRDAFDAEGLGISHPPKFLPANEIFFSLTSPVATTLRLQSRCSSSAYASAHVSRARSALQEQIPIVDAATQEVAAWGSTEDEDFVTPWYTYAMRALMPPLSALIAYFIYWRAANYPRSGVWWQDACAWTFIVSEAVSFLFGMTHWVWMWNLKFRKRVTQAQLGLRDEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDGKV 864
MQSHRAGAAEAXXXXXXXXXXXXXXXAINSSDQQVTLTPQSAEHDDADDTQASHEWAPASPVPSEGTHGTVLREEGRDAFDAEGLGISHPPKFLPANEIFFSLTSPVATTLRLQSRCSSSAYASAHVSRARSALQEQIPIVDAATQEVAAWGSTEDEDFVTPWYTYAMRALMPPLSALIAYFIYWRAANYPRSGVWWQDACAWTFIVSEAVSFLFGMTHWVWMWNLKFRKRVTQAQLGLRDEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDGKV
Sbjct: 1 MQSHRAGAAEAXXXXXXXXXXXXXXXAINSSDQQVTLTPQSAEHDDADDTQASHEWAPASPVPSEGTHGTVLREEGRDAFDAEGLGISHPPKFLPANEIFFSLTSPVATTLRLQSRCSSSAYASAHVSRARSALQEQIPIVDAATQEVAAWGSTEDEDFVTPWYTYAMRALMPPLSALIAYFIYWRAANYPRSGVWWQDACAWTFIVSEAVSFLFGMTHWVWMWNLKFRKRVTQAQLGLRDEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDGKV 288
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Match: A0A836CQC5_9STRA (Glycosyltransferase like family 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQC5_9STRA) HSP 1 Score: 355 bits (911), Expect = 5.790e-114 Identity = 177/246 (71.95%), Postives = 194/246 (78.86%), Query Frame = 1
Query: 136 DADDTQASHEWAPASPVP----SEGTHGTVLREEGRDAFDAEGLGISHPPKFLPANEIFFSLTSPVATTLRLQSRCSSSAYASAHVSRARSALQEQIPIVDAATQEVAAWGSTEDEDFVTPWYTYAMRALMPPLSALIAYFIYWRAANYPRSGVWWQDACAWTFIVSEAVSFLFGMTHWVWMWNLKFRKRVTQAQLGLRDEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDGK 861
D+ T+ +W +P SE + VL+ EGRDAFDA+ L P NE+FF+LTSP+ R+QSR SAY SAH+ RARSA+QEQIPIVDAA +EVAAWGSTEDEDFVTPWYTY MR LM PL ALI +FIYWR NYPRSGVWWQDACAWTFIVSEA FLFGMTHWVWMWNLKFRKR+TQAQLGL DEDLPT+D MIPCYSEPTEIVEMTLKACYDMDYPA KITIWVCDDGK
Sbjct: 38 DSHGTRGFDDWVANGEIPRSPGSEASSAEVLQAEGRDAFDADRLN-------KPVNEVFFTLTSPIPVR-RMQSR-QPSAYVSAHLQRARSAMQEQIPIVDAAAEEVAAWGSTEDEDFVTPWYTYVMRVLMLPLGALIFFFIYWRMYNYPRSGVWWQDACAWTFIVSEAACFLFGMTHWVWMWNLKFRKRITQAQLGLTDEDLPTIDFMIPCYSEPTEIVEMTLKACYDMDYPANKITIWVCDDGK 274
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Match: A0A836CLR0_9STRA (Glycosyltransferase like family 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR0_9STRA) HSP 1 Score: 284 bits (726), Expect = 9.710e-86 Identity = 126/159 (79.25%), Postives = 139/159 (87.42%), Query Frame = 1
Query: 385 RARSALQEQIPIVDAATQEVAAWGSTEDEDFVTPWYTYAMRALMPPLSALIAYFIYWRAANYPRSGVWWQDACAWTFIVSEAVSFLFGMTHWVWMWNLKFRKRVTQAQLGLRDEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDGK 861
+A+SA+ Q+P+ DAA QE A WGS ED DFVTPWYTY MR LM PL ALI YFIYWR NYPRSG+WW DACAW FIVSEA+ FLFGMTHWVWMW+LKFRKRVTQA+LGL D+DLPTVDIMIPCYSEPTEIVEMTL+ACYDMDYPA+K+T WVCDDGK
Sbjct: 177 QAQSAMAVQLPVEDAAAQEAAGWGSREDADFVTPWYTYVMRVLMFPLGALIFYFIYWRMYNYPRSGIWWADACAWVFIVSEAICFLFGMTHWVWMWSLKFRKRVTQAELGLTDDDLPTVDIMIPCYSEPTEIVEMTLRACYDMDYPAHKLTCWVCDDGK 335
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Match: A0A835ZDA2_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDA2_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 4.900e-15 Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1
Query: 748 MIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDGK 861
MIPCYSEPTEIVEMTLKACYDMDYPA+KIT WVCDDGK
Sbjct: 1 MIPCYSEPTEIVEMTLKACYDMDYPAHKITCWVCDDGK 38
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Match: A0A1Y1IJT9_KLENI (Cellulose synthase catalytic subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJT9_KLENI) HSP 1 Score: 79.3 bits (194), Expect = 7.930e-13 Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 1
Query: 460 TEDEDFVTPWYTYAMRALMPPLSALIAYFIYWRAANYPRSGVWWQDACAWTFIVSEAVSFLFGMTHWVWMWNLKFRKRVTQAQL-GLRDEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDGK 861
TE + W + A++ +L +I WRA W F ++E VSF+ + +W +R +Q+ GL + D P+VDI+I CYSEP +IVE T A ++DYPA K+T+++CDDGK
Sbjct: 386 TEGTQLRSGWPLFRASAIV--CQSLGVIYIVWRAIRTFNIESLWLSV---PFYMAELVSFIPSFIFCLEVWCPAYRPPRNLSQMDGLTEADYPSVDIIIVCYSEPVDIVEATACAALNLDYPADKLTVYICDDGK 515
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Match: W7TDJ5_9STRA (Cellulose synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDJ5_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.730e-11 Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 613 FIVSEAVSFLFG--MTHWVWMWNLKFRKRVTQAQLGLRDEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDGK 861
FIV+E + L G +T+++ +WN R ++ L + ++LPTVD+MIPCY+EP EIV T A MDYP K++I VCDDG
Sbjct: 162 FIVAETMIVLGGSFITYFL-VWNQCKRPKLRLVDLKVERQELPTVDVMIPCYNEPVEIVRETTLAALAMDYPKEKLSIVVCDDGN 245
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Match: A0A4D9CWF2_9STRA (Glyco_trans_2-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWF2_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 3.040e-11 Identity = 56/178 (31.46%), Postives = 92/178 (51.69%), Query Frame = 1
Query: 358 SAYASAHVSRARSA-LQEQ--IPIVDAATQEVAAWGSTE-DEDFVTP---WYTYAMRALMPPLSALIAYFIYWRAANYP--RSGVWWQDACAWTFIVSEAVSFLFGM-THWVWMWNLKFRKRVTQAQLGLRDEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDGK 861
SA+AS+ ++ +A LQE +P+ + + + E D D + P Y ++ +A+I Y + WR +++ RS W I+SE + G+ + +W+ R R + + + D + PTVD++IPCY+EP EI+ TL A +DYP KIT+ +CDDGK
Sbjct: 18 SAFASSKAAKDHNAALQEGRVMPVPQLKSSLIPVYTQEELDADVIAPNKLLLFYERGVVLLSFAAMIIY-MGWRWSSFVTHRSSYWISAP----LIISETSLVIPGLFISYFMIWHRILRPRKRLSDMPISDAEKPTVDVLIPCYTEPVEIIRDTLVAACHIDYPVDKITVNICDDGK 190
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Match: A0A7S2RSN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RSN3_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.430e-9 Identity = 28/58 (48.28%), Postives = 44/58 (75.86%), Query Frame = 1
Query: 685 RKRVTQAQLGLRDEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDG 858
++R+ L LR+ +PTVD+++PCY+EPTEI+ TL A ++DYP K++I++CDDG
Sbjct: 479 KRRLDTMNLTLRE--IPTVDVLVPCYNEPTEIIRETLVAALELDYPRNKVSIYLCDDG 534
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Match: A0A4Z0NI22_9HYPH (Cellulose synthase catalytic subunit [UDP-forming] n=1 Tax=Methylobacterium nonmethylotrophicum TaxID=1141884 RepID=A0A4Z0NI22_9HYPH) HSP 1 Score: 67.4 bits (163), Expect = 7.090e-9 Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 1
Query: 721 DEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDG 858
D DLP VD++IP Y+EPTEI+ +TL A ++DYPA K+T+W+ DDG
Sbjct: 136 DADLPAVDVLIPSYNEPTEILAVTLAAALNLDYPADKLTVWLLDDG 181
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Match: UPI0009C03059 (glycosyltransferase n=1 Tax=Ensifer aridi TaxID=1708715 RepID=UPI0009C03059) HSP 1 Score: 67.0 bits (162), Expect = 8.560e-9 Identity = 42/114 (36.84%), Postives = 57/114 (50.00%), Query Frame = 1
Query: 544 FIYWRAAN----YPRSGV---W-WQDACAWTFIVSEAVSFLFGMTHWVWMWNLKFRKRVTQAQLGLRDEDLPTVDIMIPCYSEPTEIVEMTLKACYDMDYPAYKITIWVCDDGK 861
++ WR YP G W W SE V FL M+ +V R+ QA R+ DLPTVDI IP Y+EP +++E T+ +DYP K+TI+V DDG+
Sbjct: 47 YVIWRLTETVLPYPNDGANFYWVWFVFIVEVLAFSEVVLFLILMSRYVD--RSAEADRLGQAFFAQREGDLPTVDIFIPTYNEPLDVLERTIVGALALDYPKDKLTIYVLDDGR 158 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174122 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10709 ID=mRNA_10709|Name=jgi.p|Trimin1|174122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=864bp|location=Sequence derived from alignment at Contig_110:189787..190650- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAATCGCACCGAGCTGGGGCAGCGGAAGCAGCAGCGGAGGCTGCTGCback to top protein sequence of jgi.p|Trimin1|174122 >Trimin1|174122|e_gw1.110.53.1 ID=Trimin1|174122|e_gw1.110.53.1|Name=jgi.p|Trimin1|174122|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=288bp MQSHRAGAAEAAAEAAAAAPEAPPAAAINSSDQQVTLTPQSAEHDDADDTback to top mRNA from alignment at Contig_110:189787..190650- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10709 ID=mRNA_10709|Name=jgi.p|Trimin1|174122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=864bp|location=Sequence derived from alignment at Contig_110:189787..190650- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_110:189787..190650- >mRNA_10709 ID=mRNA_10709|Name=jgi.p|Trimin1|174122|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=864bp|location=Sequence derived from alignment at Contig_110:189787..190650- (Tribonema minus UTEX_B_3156 )back to top |