mRNA_1069 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156826
Unique NamemRNA_1069
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Match: A0A836CNJ5_9STRA (SGT1 protein-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNJ5_9STRA)

HSP 1 Score: 1166 bits (3016), Expect = 0.000e+0
Identity = 630/630 (100.00%), Postives = 630/630 (100.00%), Query Frame = 1 
Query:    1 MDQDGGDGDAGPSLEDFLASDASGLPFLRGLEQSLDSVEYRVFVDPPWQAAEALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPPGWGPAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALEERGYFDGAMRGSRPYQQKAAQAAQFLTAHGGSVSADARHEDAQLHAVYVLLQGVLASLQQEGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLTRQNNAPLHAQFASAAAAAPXXXXXXVELADGEELRDVQNAVFDADAADDPAAVLDEIVRGMGAFMGNEGSGAQGAEVPAAALSGISFDVAKFMRLLEGIDDLDVSEDDDADSVGXXXXSMDEDGDSSNGEE 1890
            MDQDGGDGDAGPSLEDFLASDASGLPFLRGLEQSLDSVEYRVFVDPPWQAAEALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPPGWGPAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALEERGYFDGAMRGSRPYQQKAAQAAQFLTAHGGSVSADARHEDAQLHAVYVLLQGVLASLQQEGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLTRQNNAPLHAQFASAAAAAPXXXXXXVELADGEELRDVQNAVFDADAADDPAAVLDEIVRGMGAFMGNEGSGAQGAEVPAAALSGISFDVAKFMRLLEGIDDLDVSEDDDADSVGXXXXSMDEDGDSSNGEE
Sbjct:    1 MDQDGGDGDAGPSLEDFLASDASGLPFLRGLEQSLDSVEYRVFVDPPWQAAEALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPPGWGPAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALEERGYFDGAMRGSRPYQQKAAQAAQFLTAHGGSVSADARHEDAQLHAVYVLLQGVLASLQQEGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLTRQNNAPLHAQFASAAAAAPXXXXXXVELADGEELRDVQNAVFDADAADDPAAVLDEIVRGMGAFMGNEGSGAQGAEVPAAALSGISFDVAKFMRLLEGIDDLDVSEDDDADSVGXXXXSMDEDGDSSNGEE 630
[Close]
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Match: D7G8Q8_ECTSI (Similar to Ecdysoneless homolog (Drosophila) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q8_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 1.820e-69
Identity = 234/642 (36.45%), Postives = 312/642 (48.60%), Query Frame = 1 
Query:   13 GGDGDAGPSLEDFLASDASGLPFLRGLEQSL-DSVEYRVFVDPPWQAAEALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRAL----------------GRAAVPRA--CVECRLRFTRHLYAQIAAAPPMVALQSFPPGWGPAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALEERGYFDGAMRGSRPYQQKAAQAAQFLTAHGGSVSADARHEDAQLHAVYVLLQGVLASLQQEGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLT--RQNNAPLHAQF-------ASAAAAAPXXXXXXVE----------LADGEELRDVQN--AVFDADAADDPAAVLDEIVRGMGAFMGNEGSGAQGAEVPAAALSGISFDVAKFMRLLEGIDDLDVSED 1818
            G   D GPSLEDFLA+D S LPFL+    +  D V Y++FVD  W + E L+QLR+ +L    S     IWH E + LSV  P   S    EPHL G  +FG N+ DEW + +LL   TS      LTA + D DGEFLLIEAA AIPPFL+P N   RVW+R G VH+++P      A +  T          G ++LSEGL  +R       S   T A   VQ+ I RR+  YP +  +++H AR FLP A A A R  P L+APAV AY   +P +      M  L                G  + P A   VE R+ FTRHLYAQ+  A  +V  ++F PGWGP+     L+  A   AA LGQK+++G+E  Y    +A A ++  D      A        FA  L   G+F+G + GS+ Y++K A A QF+  +   V AD   ED ++ A     +        +     P  +   F    E++D E W+ V  ++L+ ML   R+  A L  +        A+             E            D +E + VQ+  A F ADA D     LDEIV GM AF+ +  +G  GAEV A     + FDV KFM LL G D +   ED
Sbjct:   12 GNSNDPGPSLEDFLATDPSQLPFLQERPATAEDFVRYQIFVDA-WSSIEHLQQLRESVLELVDSITAGFIWHREAFALSVAVP---SDGDLEPHLTGEQVFGGNVSDEWFVCYLLFTITSTFTE--LTACITDSDGEFLLIEAATAIPPFLSPGN---RVWVRFGEVHLVMPGCMVDRARTPRT-------LGSGTITLSEGLKAVRE------SDGGTKADEGVQRLIRRRIEGYPEEAMANMHHARCFLPLAAALAFRDTPRLVAPAVSAYCSGDPADRKMGVRMARLLAIPASASGVSTAGSKGAGSQPEAPRFVEARIAFTRHLYAQLHQAA-VVPTKAFHPGWGPSRST--LAPAAHAKAAQLGQKLSMGLEAAY----QACAESSKKDGGDFSDAIRPETWKRFADGLVRNGFFEGELEGSKRYREKTAMAKQFIRDNVLCVDADGG-EDEEIAAAQRDHRRCPVHQVVDRTLNDPRLDCV-FDAFGEEDDKEDWLEVSQADLDIMLQDYRRAEADLDPEQQGRRDRGANGVVGDDDNERDRSENVATSGARGTATDTDEEKHVQDSHAGF-ADAVDG----LDEIVTGMNAFVDDSKAGLDGAEVEAVG-GHVQFDVDKFMSLLNGEDLMSALED 616
[Close]
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Match: A0A1S3HJ93_LINUN (protein ecdysoneless homolog n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HJ93_LINUN)

HSP 1 Score: 170 bits (430), Expect = 1.330e-41
Identity = 161/484 (33.26%), Postives = 236/484 (48.76%), Query Frame = 1 
Query:  106 DSVEYRVFVDPPWQAAEA-----LEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHIL-LPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPP----GWG--PAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPA----SFAHALEERGYFDGAMRGSRPYQQKAAQAAQFLTAHGGSVSADARHEDAQLHAVYVLLQGV---LASLQQEGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLTR 1500
            D  EY +F   P    EA     LE+ ++L LA     L ++IW  EP+  ++R    SS  +  PHLYGRT +GDN+DDEW IVH+L + T    +  L A + D DGEFLLIEAA+AIP +L P  S++R+++  G +HI+ LP                TPA+++   + +  + +  N  +  G    TLAS  VQ AI RR A +P K     HR   ++P AVAA L+  P L+APAVQA+  R+P +  A   M+       P   V   ++FT+ LYAQ+         Q F P     W   P   + H S D       LG K+A G EIL  +     A+  A     AG+A  RP+       F  AL+++GYF G + GS+ Y Q    A ++      +++ D    D     +  +L  V   +  +++EG     PPE           DD++W+ + P +L+ ML +
Sbjct:   11 DVCEYFLFPLVPDDVREADVEEYLEKEQELYLAYLGDLLVDYIWQIEPF--NLRVVKDSSAGTVPPHLYGRTHYGDNVDDEWFIVHMLYKLTDNFPN--LIAKIYDADGEFLLIEAANAIPKWLNPDTSENRIFITGGNLHIVRLPH---------------TPAERRALPTGTPTVEIAVNCIRQHGDM--TLASPQVQSAILRRTASFPQKAEQSTHRVHCYVPAAVAAVLKHSPGLVAPAVQAFCHRDPVDMKACRIMQHFR----PGTRVLAEVKFTKCLYAQLMK-------QKFHPERKSDWTLPPPKSSKHKSYD-------LGMKLAYGFEILCAQ----CASNKAGREVNAGSAQ-RPVSGVRWQRFLAALQQKGYFRGELEGSKLYTQLLENAKRYFNK---TINTDDSFYDEPGRQILDILNTVDINIEEMRKEGNQL--PPE-----------DDDSWLDLTPEQLDDMLCK 434
[Close]
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Match: C3YWS1_BRAFL (Uncharacterized protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YWS1_BRAFL)

HSP 1 Score: 167 bits (422), Expect = 2.020e-40
Identity = 164/480 (34.17%), Postives = 224/480 (46.67%), Query Frame = 1 
Query:  106 DSVEYRVFVDP----PWQAAE--ALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPP----GWG--PAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALEERGYFDGAMRGSRPYQQKAAQAAQFLTAHGGSVSADARHEDAQLHAVYVLLQGV--LASLQQEGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLTRQ 1503
            D VEY ++  P    P +  E   LE+  D +LA     L ++IW  EP+ L V     ++     PHL+GRT FGDNI+DEW IVHLL+Q T+        A V D DGEFLLIEAA+ IP +LTP  S +RV+L  G +HI+    SP         P  TP       SL + L ++    ++PG    T+A    Q  I RR+  YP K+ +  H A  +LP  V A L   P+L+APAVQA+  R+P +  A  AM+         +CV  R+RFTR LY Q+         Q F P    GW   P     H + D       LG K+A G EIL  R+        +P  T   +         +   L E+GYF   + GS+ Y++   Q+A        +VS D R  D     + +L      L  LQ  G    PP             DD++W+ + P +L+AML  Q
Sbjct:    9 DVVEYFLYPAPGKTAPGRGDENSCLEEQADKILAHLSPLLVDYIWQKEPFNLRV----VAAKGDHPPHLHGRTHFGDNIEDEWFIVHLLLQITTSFPDY--IARVQDNDGEFLLIEAAEHIPRWLTPDTSHNRVFLFHGQLHIIPQPRSPAEI---ACVPAGTP-------SLRQALDIVS---RYPG---LTVAGRPTQDIIIRRIGSYPEKMHALFHHAHCYLPPGVVAVLNHSPALVAPAVQAFYERDPLDMKACRAMKHFP----TDSCVRARVRFTRCLYGQLLQ-------QRFTPDKRSGWTVPPPSHPDHPAWD-------LGIKLACGFEILCCRSP------GSPSVTDDSSQVSDVRWQRYLSFLTEKGYFKSELEGSKRYKELL-QSAHRHYQETATVSCD-RSVDHGQEVLNILRTSTWDLKQLQAAGKHLEPP-------------DDDSWLAMTPGDLDAMLEEQ 427
[Close]
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Match: A0A8C3XDS5_9PASS (Ecdysoneless cell cycle regulator n=1 Tax=Cyanoderma ruficeps TaxID=181631 RepID=A0A8C3XDS5_9PASS)

HSP 1 Score: 162 bits (409), Expect = 6.030e-39
Identity = 164/484 (33.88%), Postives = 225/484 (46.49%), Query Frame = 1 
Query:  106 DSVEYRVFV---DPPWQAAEALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPP----GWG-PAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALEERGYFDGAMRGSRPYQQKAAQAA----QFLTAHGGSVSADARHEDAQLHAVYVLLQGVLASLQQ-EGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLTRQNNAPL 1518
            D+V YR+F    + P    E L +  +L L      L  ++WH +P+ L  R  P    T    H+ G T+FGDN++DEW IV+LL + T      GL A + D DGEFLLIEAAD +P +L P NS++RV+   G +HI+ P S     +  +  P  T         + E L LL  R Q        LA+  ++ A+ +R+  YP KI + +HRAR FLP  + A LR+ PSL+A AVQA+  R+PG+     A R   R       V   + FTR LYAQ+         Q F P    G+  PA   P   A        LG K+A G EIL  ++ +A     APDA     + P  L   F  +L+E+ YF G M GS  Y +    A     Q +     SV      E      +  LLQ     L++ E  A   PPE           DD++W+ + P  L+ ML    N  L
Sbjct:   12 DAVRYRLFAAAAEGPG-GEELLRRCAELALVRFAPLLASYVWHRQPFRL--RYVPRRGETPA--HIGGTTVFGDNVEDEWFIVYLLREITREF--PGLAARIDDNDGEFLLIEAADFLPKWLNPENSENRVFFYKGELHII-PLSETWEQDWDLCAPCPT---------IPEALALLSTRSQE------FLAAEPIRAAVEKRIHGYPEKIQASLHRARCFLPAGIVAVLRQRPSLVAAAVQAFYLRDPGD---VRACRRPFRTFPAEQRVMTLVTFTRCLYAQLVQ-------QQFVPDRRSGYTLPAPSHPQYRAYE------LGMKLAHGFEILCSKSSKA-----APDAERNVLSGP--LWERFLRSLKEKDYFKGEMEGSAKYLELLHMAEDHFQQSVAVPESSVEVSPGDE------ILTLLQTTSIDLEEFEREAACLPPE-----------DDDSWLDITPDALDQMLKETRNESL 432
[Close]
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Match: A0A1Y1IPJ8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IPJ8_KLENI)

HSP 1 Score: 163 bits (412), Expect = 8.960e-39
Identity = 184/602 (30.56%), Postives = 277/602 (46.01%), Query Frame = 1 
Query:   85 RGLEQSLDSVEYRVFVDPPW-------QAAEALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPA----------------SSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPPGWGPAGGAPHLSADAADAAAALGQKVALGMEILYM-RAQRATAAAAAPDATAAGAAAPRPLPA--SFAHALEERGYFDGAMRGSRPYQQK-AAQAAQFLTAHGGSVSADARHEDAQLHAVYVLLQGVLASLQQEGAATAPPPEAAPFPPVTEDNDD-EAWMVVQPSEL-EAMLTRQNNAPLHAQFASAAAAAPXXXXXXVELADGEELRDVQNAVFDADAADDPAAVLDEIVRGMGAFMGNEGSGAQGAEVPAAALSG-----ISFDVAKFMRLLE 1788
            R   ++ D VEY VF+D          Q+ + LE+ +  LL   +  +  +IW  + + L V   P                 ++ T+  PHLYG + FGDNIDDEW IV LLM  +    +  +T +V D DG FLLIEAA A+P +L P  S +RV++R GA+H++ P +             AT   +  P+SL++ L  LR+       S  T AS  +Q A+ R +A YP +  S+ HRAR  LP  VA  LR+ P L+APAV+A+  R+     AAA M            V+  ++F+R +YAQ+       A + +PP   P      LSA+       LG K+A+G E+LY  RA+    AA   +      A P+  P   +F  +LE RGYF   + GS  + +  AA  A++      +   + +++ A+       ++ +L            P  AA FP     +DD +AW+    +EL +AM  R++   ++A+  +             E A GE       A FD     D    + + V  M ++        QGAEVP  A  G     ++ D+ KFM  LE
Sbjct:   11 RRASENADQVEYAVFLDEVMVGKGEQAQSRQLLEECKMALLNLVQPIIDGYIWQKDAFDLRVVDIPGVGPGWKVEDGEQAGGGTADTAVPPHLYGSSRFGDNIDDEWFIVFLLMYISRCFPA--VTITVRDSDGYFLLIEAAYALPKWLEPDTSANRVFIRRGALHLISPPAG------------ATRRHEPPPISLADALAALRD------PSVETRASDRIQSAVQRPIAGYPERARSNQHRARCLLPLRVAHILRQEPQLVAPAVEAFYDRDVDSMKAAAKMAFALPEGSQTPLVKASVQFSRAMYAQLRQQE-FQAPKPYPP-LPPPHHPDFLSAE-------LGMKLAVGFEMLYADRARYGQTAAEDGEEAPQSRAPPQDDPGWRAFKQSLESRGYFRDFLEGSAEHSRLLAAAVAEYRQTQAAARVNEKQYDPAKR------MEDILRM----------PATAADFPESALPSDDSDAWLFDGETELTQAMRERESEMEVYARERAERQPEGPAGEGSPENAPGE-------ASFDTTRVVD---TMKKFVESMSSY--------QGAEVPPGARRGEEGPDVNIDMDKFMTELE 549
[Close]
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Match: A0A7K8LB28_9GRUI (ECD protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K8LB28_9GRUI)

HSP 1 Score: 160 bits (405), Expect = 3.050e-38
Identity = 151/474 (31.86%), Postives = 225/474 (47.47%), Query Frame = 1 
Query:  106 DSVEYRVFVDPPWQAAEA-LEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPPGWGPAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALEERGYFDGAMRGSRPYQQKAAQAAQF----LTAHGGSVSADARHEDAQLHAVYVLLQGVLASLQQ-EGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLTRQNN 1509
            D+V YR F       +EA L    + +       L  +IW  +P+ L  R PP   T +   H+ G T+FGDN++DEW IV+L+ + T      GL A + D DGEFLLIEAAD +P +L P NS +RV+  +G +HI+ P S        ++  +         L++S+ L LL  R      S   LA+  ++ A+ +R++ YP KI +  HRA  +LP  + A LR+ PSL+APAVQA+  R+P +  A  + +       P   V   + FT+ LYAQ+         Q F P    +G    L +D    A  LG K+A G EIL  +  +A+     PD+     + P  L   F  +L+E+ YF G M GS  Y +    A  +    +     SV   +  E      +  LLQ     +++ E  A   PPE           DD++W+ + P +L+ ML    N
Sbjct:   12 DAVSYRFFAARAGAGSEAVLRGCAEAIAVRFAPLLAAYIWQQQPFRLRYR-PPRGETPA---HIGGTTLFGDNVEDEWFIVYLVREITREF--PGLAARIDDNDGEFLLIEAADFLPKWLNPENSDNRVFFYNGELHII-PLSEADEQERDLSADS---------LTISQALTLLSTR------SEEFLAAEPIRTAVYKRISGYPEKIQASFHRAHCYLPAGIVAVLRQRPSLVAPAVQAFYLRDPVDLRACRSFKTFP----PDERVMTVVTFTKCLYAQLVQ-------QKFVPDRR-SGYTLPLPSDPQYKAYELGMKLAHGFEILCSKCSKAS-----PDSKRKVLSGP--LWDRFLRSLKEKNYFKGEMEGSAKYSELLHMAEDYFEQSIAKQESSVEVSSGDE------ILDLLQTTTIDVKEFEREAACLPPE-----------DDDSWLEITPDDLDKMLKEARN 427
[Close]
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Match: A0A7R9AA23_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9AA23_9CRUS)

HSP 1 Score: 160 bits (404), Expect = 3.400e-38
Identity = 152/485 (31.34%), Postives = 231/485 (47.63%), Query Frame = 1 
Query:  106 DSVEYRVFV----------DPPWQAAEALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPH-------LYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPPGWGPAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALEERGYFDGAMRGSRPYQQKAAQAAQFLTAHGGSVSADARHEDAQLHA---VYVLLQGVLASLQQEGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLTR 1500
            +SV Y VF           DPP Q      ++   L+++    L  +IWH EP+  S+R  P++     E         L G T FG+N++DEW IV LL+Q T    S  L A V D DGEFLL+EAA+ +P +L P ++++RV+L  G +H++     P     G   P  +     G  SLS+ LHL+R R  H      T A   VQ+ +  R+  YPG++   VHR    +P  +A  L R P L++PAV A+  R+P +  A  AM+       P  CV  R+ FTR LYA       M++   + P        P   + A   +A LG K+A G EIL + A+RA+ + +  +  A+ +    P    F  +LE++GYF G + GS+  +   + A ++   H      ++   D +  A   +  L +     +  E A       A   PP    +DD++W+ + P  LEA+L R
Sbjct:   15 ESVAYDVFYRLSSEEASSSDPPHQ------EIISTLVSNVAHHLLAYIWHKEPF--SLRPHPSTPYVDEEDGNPPAWAWLIGETSFGENVEDEWFIVWLLLQLTEAF-SPDLIARVRDSDGEFLLVEAAEHLPEWLDPNSARNRVFLHGGGLHVIGAGRDP-----GWVSPIPS-----GVPSLSDALHLVR-RLPH-----LTRAPSPVQRDVRGRIRGYPGRMEESVHRVNVRVPVVLAGMLEREPWLVSPAVHAFHHRDPIDVKALRAMKFFP----PETCVTTRVTFTRCLYA-------MLSSGKYEPDHRTGWKFPLPPSSAEYKSAVLGMKLACGFEILAVEAERASKSES--NGVASASLDDDPKWKEFLKSLEDKGYFQGEVEGSQKQKALMSSAREYYQRHVRDCDVESSRGDFRRRAGKRILELCRSKSLDVDLEEAER----RAQSLPP----SDDDSWLDLTPESLEALLLR 453
[Close]
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Match: A0A852GCT9_9CHAR (ECD protein (Fragment) n=1 Tax=Larus smithsonianus TaxID=243888 RepID=A0A852GCT9_9CHAR)

HSP 1 Score: 156 bits (395), Expect = 6.790e-38
Identity = 150/473 (31.71%), Postives = 224/473 (47.36%), Query Frame = 1 
Query:  106 DSVEYRVFVDPPWQAAEALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPPGWGPAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALEERGYFDGAMRGSRPYQQKAAQAAQF----LTAHGGSVSADARHEDAQLHAVYVLLQGVLASLQQ-EGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLTRQNN 1509
            D+V YR+F          L +  + ++      L  +IW  +P+ L  R  PA   T    H+ G T+FGDN++DEW IV+L+ + T      GL A + D DGEFLLIEAAD +P +L P NS +RV+   G +HI+ P S        ++  + T         +S+ L LL +R      S   LA+  ++ A+ +R++ YP KI +  HRA  +LP  + A LR+ PSL+APAVQA+  R+P +  A  + +       P   V   + FT+ LYAQ+         Q F P    +G    L +     A  LG K+A G EIL  +  + +     PD+     + P  L   F  +L+E+ YF G M GS  Y +   +A  +    +T    SV A+   E      +  LLQ     L++ E  A   PPE           DD++W+ + P +L+ ML    N
Sbjct:   12 DAVRYRLFAAAGAGGEALLRRCAEAIVVRLAPLLSAYIWQRQPFRL--RCVPARGDTPA--HIGGTTLFGDNVEDEWFIVYLVREITREF--PGLAARIDDNDGEFLLIEAADFLPKWLNPENSDNRVFFYKGELHII-PLSETDEQECDLSAASPT---------ISQALTLLSSR------SEEFLAAEPIRAAVNKRISGYPEKIQASFHRAHCYLPAGIVAVLRQRPSLVAPAVQAFYLRDPVDLRACRSFQTFP----PDERVMTVVTFTKCLYAQLVQ-------QKFVPDRR-SGYTLPLPSHPQYKAYELGMKLAHGFEILCSKCSKVS-----PDSKRNVLSGP--LWERFLSSLKEKHYFKGEMEGSAKYLELLHKAEDYFQQSVTKPESSVEANPGDE------ILTLLQTTTIDLKELEREAACLPPE-----------DDDSWLEITPDDLDQMLKEGRN 426
[Close]
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Match: A0A6P4YDQ5_BRABE (LOW QUALITY PROTEIN: protein ecdysoneless homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YDQ5_BRABE)

HSP 1 Score: 159 bits (401), Expect = 8.880e-38
Identity = 139/402 (34.58%), Postives = 192/402 (47.76%), Query Frame = 1 
Query:   82 LRGLEQSLDSVEYRVFVDPPWQAAE------ALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYGRTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAIPPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPLSLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRARAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPRACVECRLRFTRHLYAQIAAAPPMVALQSFPP----GWG--PAGGAPHLSADAADAAAALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALEERGYFDGAMRGSRPYQQ 1251
            +  LE+  D VEY ++  P     E       LE+  D +LA     L ++IW  EP+ L        +     PHL+GRT FGDNI+DEW IVHLL+Q T+        A V D DG+FLLIEAA+ +P +LTP  S +RV+L  G VHI+    SP         P  TP       SL + L ++    ++PG    T+A    Q AI  R+  YP K++S+ H A  +LP  V   L R P L+APAVQA+  R+P +  A   M+          CV+ R+RFTR LY+Q+         Q F P    GW   P     H + D       LG K+A G EIL  R+          D+  + +         +   L E+GYF   + GS+ Y++
Sbjct:    1 MAALERQEDVVEYFLYPVPGKTGQEKGDGGSGLEEQADKILAQLSPLLVDYIWQKEPFNLRA----VQAKGDHPPHLHGRTHFGDNIEDEWFIVHLLLQITASFPDY--IARVQDNDGQFLLIEAAEHLPRWLTPDTSHNRVFLFHGQVHIIPQPRSPAEI---ACVPAGTP-------SLRQALDIVS---RYPG---LTVAGRPTQDAIINRIGSYPEKMSSNFHHAHCYLPAGVVTVLHRSPGLVAPAVQAFYERDPLDTKACRTMKHFP----TDTCVKARVRFTRCLYSQLLQ-------QRFTPDKRSGWTLPPPSHPDHPAWD-------LGVKLACGFEILCCRSPG--------DSEESSSHISDVRWQRYLAFLTEKGYFQSELEGSKRYKE 354
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156826 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CNJ5_9STRA0.000e+0100.00SGT1 protein-domain-containing protein (Fragment) ... [more]
D7G8Q8_ECTSI1.820e-6936.45Similar to Ecdysoneless homolog (Drosophila) n=2 T... [more]
A0A1S3HJ93_LINUN1.330e-4133.26protein ecdysoneless homolog n=1 Tax=Lingula ungui... [more]
C3YWS1_BRAFL2.020e-4034.17Uncharacterized protein n=2 Tax=Branchiostoma flor... [more]
A0A8C3XDS5_9PASS6.030e-3933.88Ecdysoneless cell cycle regulator n=1 Tax=Cyanoder... [more]
A0A1Y1IPJ8_KLENI8.960e-3930.56Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7K8LB28_9GRUI3.050e-3831.86ECD protein (Fragment) n=3 Tax=Neognathae TaxID=88... [more]
A0A7R9AA23_9CRUS3.400e-3831.34Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A852GCT9_9CHAR6.790e-3831.71ECD protein (Fragment) n=1 Tax=Larus smithsonianus... [more]
A0A6P4YDQ5_BRABE8.880e-3834.58LOW QUALITY PROTEIN: protein ecdysoneless homolog ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:975679..977568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156826|e_gw1.1.299.1
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0001654,GO:0001655,GO:0001700,GO:0001745,GO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006066,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006396,GO:0006397,GO:0006629,GO:0006694,GO:0006697,GO:0006725,GO:0006807,GO:0006996,GO:0007030,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007390,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007442,GO:0007443,GO:0007458,GO:0007591,GO:0008150,GO:0008152,GO:0008202,GO:0008205,GO:0008258,GO:0008283,GO:0008362,GO:0008380,GO:0008610,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009608,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010256,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010817,GO:0016043,GO:0016070,GO:0016071,GO:0016125,GO:0016126,GO:0016319,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030808,GO:0030811,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0034754,GO:0035035,GO:0035239,GO:0035295,GO:0040003,GO:0042180,GO:0042181,GO:0042303,GO:0042325,GO:0042335,GO:0042445,GO:0042446,GO:0043021,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043467,GO:0043470,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044877,GO:0045455,GO:0045456,GO:0045893,GO:0045935,GO:0045944,GO:0046165,GO:0046483,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048542,GO:0048546,GO:0048565,GO:0048592,GO:0048598,GO:0048609,GO:0048619,GO:0048729,GO:0048731,GO:0048732,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051193,GO:0051196,GO:0051252,GO:0051254,GO:0051341,GO:0051353,GO:0051704,GO:0051707,GO:0051726,GO:0055123,GO:0060255,GO:0060322,GO:0060429,GO:0060562,GO:0061326,GO:0061333,GO:0061525,GO:0062012,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070990,GO:0071704,GO:0071840,GO:0072001,GO:0072002,GO:0080090,GO:0090304,GO:0090596,GO:0097659,GO:0140110,GO:1900371,GO:1900542,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1901987,GO:1901990,GO:1902652,GO:1902653,GO:1902680,GO:1902806,GO:1903218,GO:1903220,GO:1903506,GO:1903508,GO:1903578,GO:2000045,GO:2000112,GO:2001141,GO:2001169
Preferred nameECD
Descriptiontranscription coactivator activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2406@1|root,KOG2406@2759|Eukaryota
Evalue2.98e-70
Seed ortholog2880.D7G8Q8
Hectar predicted targeting categoryother localisation
TranscriptId157148
TrackFilteredModels1
ProteinId156826
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156826gene_1069Tribonema minus UTEX_B_3156 geneContig_1 975679..977568 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1069_1exon_1069_1Tribonema minus UTEX_B_3156 exonContig_1 975679..977568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1069CDS_1069Tribonema minus UTEX_B_3156 CDSContig_1 975679..977568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156826Trimin1|156826|e_gw1.1.299.1Tribonema minus UTEX_B_3156 polypeptideContig_1 975679..977568 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1069 ID=mRNA_1069|Name=jgi.p|Trimin1|156826|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1890bp|location=Sequence derived from alignment at Contig_1:975679..977568- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAAGACGGCGGCGATGGCGACGCCGGCCCCTCCTTGGAGGACTT
CCTGGCCTCTGATGCCTCAGGCCTGCCCTTCCTGCGGGGCCTTGAACAAT
CGCTGGACAGCGTGGAGTACCGCGTGTTTGTGGATCCACCCTGGCAAGCA
GCTGAAGCACTGGAGCAATTGAGGGATCTATTGCTGGCGGATGCTAGATC
CACACTGGGGGAGCACATATGGCACTGCGAGCCTTACATTCTGTCTGTCC
GCACGCCCCCAGCATCCTCGACAACATCGCCGGAGCCCCATCTTTATGGG
CGCACCATATTTGGCGACAACATCGATGATGAATGGCTCATTGTACACCT
GCTCATGCAGGCTACGTCGCGGCATCGGTCTCAAGGGCTTACCGCGTCCG
TCGTTGACGGCGATGGCGAGTTTCTGCTCATCGAAGCCGCGGATGCCATC
CCGCCATTCCTAACTCCAGTCAATTCGCAGCACAGGGTCTGGCTCCGGGA
CGGCGCGGTGCACATTCTGCTGCCGGATTCGTCGCCAACAGCCGCCAACA
GCGGCGTCACGGGTCCCAACGCAACGCCGGCACAGAAGCAGGGTCCTCTG
TCCCTTTCGGAGGGATTGCACCTGCTGCGGAACCGCTGCCAACACCCCGG
CAGCAGCAGCACTACCCTCGCCTCAGGGCACGTGCAGCAGGCCATCGCGC
GGCGGCTGGCGCCGTACCCGGGCAAAATAGCCAGCGACGTGCACCGCGCG
CGCGCCTTCCTGCCGCGCGCCGTCGCCGCCGCGCTGCGCCGCCACCCCTC
CCTCATCGCGCCGGCGGTGCAGGCGTACAGCGGGCGCGAGCCCGGCGAGG
GCAGCGCCGCGGCCGCCATGAGAGCGCTCGGCAGGGCCGCCGTGCCGCGC
GCGTGCGTGGAGTGCCGCCTGCGCTTCACGCGCCACCTGTACGCGCAGAT
CGCGGCGGCGCCGCCGATGGTGGCGCTGCAGTCCTTCCCGCCGGGGTGGG
GGCCGGCGGGAGGGGCGCCCCACCTGAGCGCTGACGCCGCGGATGCCGCC
GCCGCCCTGGGCCAGAAGGTGGCGCTGGGGATGGAGATTCTCTACATGCG
CGCGCAGCGCGCGACCGCGGCGGCGGCGGCGCCCGACGCCACGGCGGCGG
GTGCCGCAGCGCCGCGGCCGCTGCCGGCGTCGTTCGCGCACGCGCTGGAG
GAGCGCGGGTACTTTGACGGCGCGATGCGCGGCTCGCGGCCGTACCAGCA
GAAGGCGGCGCAGGCCGCGCAGTTCCTGACGGCGCACGGTGGCTCCGTCA
GCGCCGACGCGCGGCACGAGGACGCGCAGCTGCACGCCGTGTACGTGCTG
CTGCAGGGCGTGCTCGCTTCGCTGCAGCAGGAGGGCGCCGCGACAGCGCC
GCCGCCTGAAGCGGCGCCGTTCCCGCCGGTCACGGAGGACAACGACGACG
AGGCGTGGATGGTCGTGCAACCCAGCGAGCTGGAGGCCATGCTGACGCGG
CAGAACAACGCGCCGCTGCACGCGCAGTTCGCCTCCGCAGCAGCGGCTGC
TCCAGCGGCGGCGGCGGCGCCCGTCGAGCTCGCCGACGGCGAGGAGCTGC
GCGATGTGCAGAACGCTGTATTCGATGCCGACGCCGCAGATGATCCGGCG
GCCGTCCTGGATGAGATCGTGCGGGGAATGGGTGCGTTCATGGGGAACGA
GGGCAGCGGCGCGCAGGGCGCGGAGGTGCCGGCGGCAGCGCTCAGCGGCA
TCAGCTTCGACGTCGCCAAGTTCATGCGGCTGCTGGAGGGCATTGACGAC
CTGGACGTCAGCGAAGACGACGACGCTGACAGCGTGGGCGGCGGCGGCGG
CAGCATGGACGAGGACGGCGACTCCAGCAACGGCGAAGAG
back to top

protein sequence of jgi.p|Trimin1|156826

>Trimin1|156826|e_gw1.1.299.1 ID=Trimin1|156826|e_gw1.1.299.1|Name=jgi.p|Trimin1|156826|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=630bp
MDQDGGDGDAGPSLEDFLASDASGLPFLRGLEQSLDSVEYRVFVDPPWQA
AEALEQLRDLLLADARSTLGEHIWHCEPYILSVRTPPASSTTSPEPHLYG
RTIFGDNIDDEWLIVHLLMQATSRHRSQGLTASVVDGDGEFLLIEAADAI
PPFLTPVNSQHRVWLRDGAVHILLPDSSPTAANSGVTGPNATPAQKQGPL
SLSEGLHLLRNRCQHPGSSSTTLASGHVQQAIARRLAPYPGKIASDVHRA
RAFLPRAVAAALRRHPSLIAPAVQAYSGREPGEGSAAAAMRALGRAAVPR
ACVECRLRFTRHLYAQIAAAPPMVALQSFPPGWGPAGGAPHLSADAADAA
AALGQKVALGMEILYMRAQRATAAAAAPDATAAGAAAPRPLPASFAHALE
ERGYFDGAMRGSRPYQQKAAQAAQFLTAHGGSVSADARHEDAQLHAVYVL
LQGVLASLQQEGAATAPPPEAAPFPPVTEDNDDEAWMVVQPSELEAMLTR
QNNAPLHAQFASAAAAAPAAAAAPVELADGEELRDVQNAVFDADAADDPA
AVLDEIVRGMGAFMGNEGSGAQGAEVPAAALSGISFDVAKFMRLLEGIDD
LDVSEDDDADSVGGGGGSMDEDGDSSNGEE
back to top

mRNA from alignment at Contig_1:975679..977568-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1069 ID=mRNA_1069|Name=jgi.p|Trimin1|156826|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1890bp|location=Sequence derived from alignment at Contig_1:975679..977568- (Tribonema minus UTEX_B_3156 )
ATGGATCAAGACGGCGGCGATGGCGACGCCGGCCCCTCCTTGGAGGACTT
CCTGGCCTCTGATGCCTCAGGCCTGCCCTTCCTGCGGGGCCTTGAACAAT
CGCTGGACAGCGTGGAGTACCGCGTGTTTGTGGATCCACCCTGGCAAGCA
GCTGAAGCACTGGAGCAATTGAGGGATCTATTGCTGGCGGATGCTAGATC
CACACTGGGGGAGCACATATGGCACTGCGAGCCTTACATTCTGTCTGTCC
GCACGCCCCCAGCATCCTCGACAACATCGCCGGAGCCCCATCTTTATGGG
CGCACCATATTTGGCGACAACATCGATGATGAATGGCTCATTGTACACCT
GCTCATGCAGGCTACGTCGCGGCATCGGTCTCAAGGGCTTACCGCGTCCG
TCGTTGACGGCGATGGCGAGTTTCTGCTCATCGAAGCCGCGGATGCCATC
CCGCCATTCCTAACTCCAGTCAATTCGCAGCACAGGGTCTGGCTCCGGGA
CGGCGCGGTGCACATTCTGCTGCCGGATTCGTCGCCAACAGCCGCCAACA
GCGGCGTCACGGGTCCCAACGCAACGCCGGCACAGAAGCAGGGTCCTCTG
TCCCTTTCGGAGGGATTGCACCTGCTGCGGAACCGCTGCCAACACCCCGG
CAGCAGCAGCACTACCCTCGCCTCAGGGCACGTGCAGCAGGCCATCGCGC
GGCGGCTGGCGCCGTACCCGGGCAAAATAGCCAGCGACGTGCACCGCGCG
CGCGCCTTCCTGCCGCGCGCCGTCGCCGCCGCGCTGCGCCGCCACCCCTC
CCTCATCGCGCCGGCGGTGCAGGCGTACAGCGGGCGCGAGCCCGGCGAGG
GCAGCGCCGCGGCCGCCATGAGAGCGCTCGGCAGGGCCGCCGTGCCGCGC
GCGTGCGTGGAGTGCCGCCTGCGCTTCACGCGCCACCTGTACGCGCAGAT
CGCGGCGGCGCCGCCGATGGTGGCGCTGCAGTCCTTCCCGCCGGGGTGGG
GGCCGGCGGGAGGGGCGCCCCACCTGAGCGCTGACGCCGCGGATGCCGCC
GCCGCCCTGGGCCAGAAGGTGGCGCTGGGGATGGAGATTCTCTACATGCG
CGCGCAGCGCGCGACCGCGGCGGCGGCGGCGCCCGACGCCACGGCGGCGG
GTGCCGCAGCGCCGCGGCCGCTGCCGGCGTCGTTCGCGCACGCGCTGGAG
GAGCGCGGGTACTTTGACGGCGCGATGCGCGGCTCGCGGCCGTACCAGCA
GAAGGCGGCGCAGGCCGCGCAGTTCCTGACGGCGCACGGTGGCTCCGTCA
GCGCCGACGCGCGGCACGAGGACGCGCAGCTGCACGCCGTGTACGTGCTG
CTGCAGGGCGTGCTCGCTTCGCTGCAGCAGGAGGGCGCCGCGACAGCGCC
GCCGCCTGAAGCGGCGCCGTTCCCGCCGGTCACGGAGGACAACGACGACG
AGGCGTGGATGGTCGTGCAACCCAGCGAGCTGGAGGCCATGCTGACGCGG
CAGAACAACGCGCCGCTGCACGCGCAGTTCGCCTCCGCAGCAGCGGCTGC
TCCAGCGGCGGCGGCGGCGCCCGTCGAGCTCGCCGACGGCGAGGAGCTGC
GCGATGTGCAGAACGCTGTATTCGATGCCGACGCCGCAGATGATCCGGCG
GCCGTCCTGGATGAGATCGTGCGGGGAATGGGTGCGTTCATGGGGAACGA
GGGCAGCGGCGCGCAGGGCGCGGAGGTGCCGGCGGCAGCGCTCAGCGGCA
TCAGCTTCGACGTCGCCAAGTTCATGCGGCTGCTGGAGGGCATTGACGAC
CTGGACGTCAGCGAAGACGACGACGCTGACAGCGTGGGCGGCGGCGGCGG
CAGCATGGACGAGGACGGCGACTCCAGCAACGGCGAAGAG
back to top

Coding sequence (CDS) from alignment at Contig_1:975679..977568-

>mRNA_1069 ID=mRNA_1069|Name=jgi.p|Trimin1|156826|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1890bp|location=Sequence derived from alignment at Contig_1:975679..977568- (Tribonema minus UTEX_B_3156 )
ATGGATCAAGACGGCGGCGATGGCGACGCCGGCCCCTCCTTGGAGGACTT
CCTGGCCTCTGATGCCTCAGGCCTGCCCTTCCTGCGGGGCCTTGAACAAT
CGCTGGACAGCGTGGAGTACCGCGTGTTTGTGGATCCACCCTGGCAAGCA
GCTGAAGCACTGGAGCAATTGAGGGATCTATTGCTGGCGGATGCTAGATC
CACACTGGGGGAGCACATATGGCACTGCGAGCCTTACATTCTGTCTGTCC
GCACGCCCCCAGCATCCTCGACAACATCGCCGGAGCCCCATCTTTATGGG
CGCACCATATTTGGCGACAACATCGATGATGAATGGCTCATTGTACACCT
GCTCATGCAGGCTACGTCGCGGCATCGGTCTCAAGGGCTTACCGCGTCCG
TCGTTGACGGCGATGGCGAGTTTCTGCTCATCGAAGCCGCGGATGCCATC
CCGCCATTCCTAACTCCAGTCAATTCGCAGCACAGGGTCTGGCTCCGGGA
CGGCGCGGTGCACATTCTGCTGCCGGATTCGTCGCCAACAGCCGCCAACA
GCGGCGTCACGGGTCCCAACGCAACGCCGGCACAGAAGCAGGGTCCTCTG
TCCCTTTCGGAGGGATTGCACCTGCTGCGGAACCGCTGCCAACACCCCGG
CAGCAGCAGCACTACCCTCGCCTCAGGGCACGTGCAGCAGGCCATCGCGC
GGCGGCTGGCGCCGTACCCGGGCAAAATAGCCAGCGACGTGCACCGCGCG
CGCGCCTTCCTGCCGCGCGCCGTCGCCGCCGCGCTGCGCCGCCACCCCTC
CCTCATCGCGCCGGCGGTGCAGGCGTACAGCGGGCGCGAGCCCGGCGAGG
GCAGCGCCGCGGCCGCCATGAGAGCGCTCGGCAGGGCCGCCGTGCCGCGC
GCGTGCGTGGAGTGCCGCCTGCGCTTCACGCGCCACCTGTACGCGCAGAT
CGCGGCGGCGCCGCCGATGGTGGCGCTGCAGTCCTTCCCGCCGGGGTGGG
GGCCGGCGGGAGGGGCGCCCCACCTGAGCGCTGACGCCGCGGATGCCGCC
GCCGCCCTGGGCCAGAAGGTGGCGCTGGGGATGGAGATTCTCTACATGCG
CGCGCAGCGCGCGACCGCGGCGGCGGCGGCGCCCGACGCCACGGCGGCGG
GTGCCGCAGCGCCGCGGCCGCTGCCGGCGTCGTTCGCGCACGCGCTGGAG
GAGCGCGGGTACTTTGACGGCGCGATGCGCGGCTCGCGGCCGTACCAGCA
GAAGGCGGCGCAGGCCGCGCAGTTCCTGACGGCGCACGGTGGCTCCGTCA
GCGCCGACGCGCGGCACGAGGACGCGCAGCTGCACGCCGTGTACGTGCTG
CTGCAGGGCGTGCTCGCTTCGCTGCAGCAGGAGGGCGCCGCGACAGCGCC
GCCGCCTGAAGCGGCGCCGTTCCCGCCGGTCACGGAGGACAACGACGACG
AGGCGTGGATGGTCGTGCAACCCAGCGAGCTGGAGGCCATGCTGACGCGG
CAGAACAACGCGCCGCTGCACGCGCAGTTCGCCTCCGCAGCAGCGGCTGC
TCCAGCGGCGGCGGCGGCGCCCGTCGAGCTCGCCGACGGCGAGGAGCTGC
GCGATGTGCAGAACGCTGTATTCGATGCCGACGCCGCAGATGATCCGGCG
GCCGTCCTGGATGAGATCGTGCGGGGAATGGGTGCGTTCATGGGGAACGA
GGGCAGCGGCGCGCAGGGCGCGGAGGTGCCGGCGGCAGCGCTCAGCGGCA
TCAGCTTCGACGTCGCCAAGTTCATGCGGCTGCTGGAGGGCATTGACGAC
CTGGACGTCAGCGAAGACGACGACGCTGACAGCGTGGGCGGCGGCGGCGG
CAGCATGGACGAGGACGGCGACTCCAGCAACGGCGAAGAG
back to top