mRNA_10699 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A835ZGF8_9STRA (SGNH_hydro domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF8_9STRA) HSP 1 Score: 883 bits (2281), Expect = 0.000e+0 Identity = 450/450 (100.00%), Postives = 450/450 (100.00%), Query Frame = 1
Query: 1 MPLPFLLKPPDITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTDVRLDSQECVQATRTAAEGASLIIDGESAPARCAVLLVVGGESAPPCVLCAPPLPLLLRFALCEGRCSRRVSTPRRRHVCRWRCSVPYVRDGTAGRSRRAAAALRSSRPRTRVQRGSAQAHTVLRADCRRTHARRSQATIVHEGLCTYRVA 1350
MPLPFLLKPPDITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTDVRLDSQECVQATRTAAEGASLIIDGESAPARCAVLLVVGGESAPPCVLCAPPLPLLLRFALCEGRCSRRVSTPRRRHVCRWRCSVPYVRDGTAGRSRRAAAALRSSRPRTRVQRGSAQAHTVLRADCRRTHARRSQATIVHEGLCTYRVA
Sbjct: 1 MPLPFLLKPPDITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTDVRLDSQECVQATRTAAEGASLIIDGESAPARCAVLLVVGGESAPPCVLCAPPLPLLLRFALCEGRCSRRVSTPRRRHVCRWRCSVPYVRDGTAGRSRRAAAALRSSRPRTRVQRGSAQAHTVLRADCRRTHARRSQATIVHEGLCTYRVA 450
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A836CKM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM3_9STRA) HSP 1 Score: 425 bits (1092), Expect = 9.790e-144 Identity = 219/325 (67.38%), Postives = 252/325 (77.54%), Query Frame = 1
Query: 31 DITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTDVRLDSQECVQATRTAAEGASLIIDGESAPARCAVL 1005
D T +QLEVLF+KCVTPGASI V + GGSITAG GA VGD N YIHR+A V + CP A V+ +NAARGGTGSLTTGMCL N+LGP VDLLA+EFSLND EQYTVGG FSAAPYELL RAAL+A+ HAPA+Y ++FWG F+H SAQ HLAVAR YGVTGVSMRDVVW LDA + PYAT++A+LAD +HHP+A VH HLGDI++LH+A+ L RWA A A A RR A LLP A L PLAPELA YDV A+ F CE+AG PREGP P+LY+ GW +F MGART RLDSQ+CVQATR EGASL++DGE CA L
Sbjct: 27 DTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPA-LRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATR---EGASLLLDGELRGRECACL 347
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A836CHL6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL6_9STRA) HSP 1 Score: 188 bits (478), Expect = 3.310e-53 Identity = 107/244 (43.85%), Postives = 151/244 (61.89%), Query Frame = 1
Query: 37 TEQQLEVLFEKCVTPGASIVVASTGGSITA--GGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPL 762
T++QLE L+ KC+TPG+ IV+ GGSI+A GG++ G L + + +CP A V NAA G TGSL GMC + LG VD+L +EFSLND+ Y G + YEL +RA LT++QHAPA+++++FWG F++ SAQE H +AR YG+TG+S+RD VW L A+ AP+A + ++ D HHP H + G +LAL++A++ + WA D A A + A LP L PL
Sbjct: 20 TDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYG------MTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKD-SHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALD--SARFALPPPTLPPPL 254
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA) HSP 1 Score: 201 bits (512), Expect = 6.750e-53 Identity = 119/270 (44.07%), Postives = 159/270 (58.89%), Query Frame = 1
Query: 34 ITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVG-GAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWAD--ADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPRE 834
IT+QQL LF KC+TPG++I + + GGSIT H+ + YI + R +AQ+CP+A V T N AR G+LT GMC + P +DL EFSLND YT G FSA P+ELL R L+AY APAV++++FWG F H+SAQ H AV Y VTG+S+RD+VW + APYA ++ + D HHPN R ++L L++AQ+ WA A GG A R RL P PLAP+L +D+ + F C I G ++
Sbjct: 87 ITDQQLHPLFLKCITPGSTIRIGALGGSIT-----HLPSS--YIWPVGRLIAQMCPEATVETFNGARSSHGALTLGMCARTVTAPALDLAVSEFSLNDRAHYTADDGTFSALPFELLTRTLLSAYDPAPAVFNLFFWGMSFSHDSAQPWHEAVGEHYDVTGISLRDLVWPYYETSKAPYARRQDVCVDG-HHPNDRFQKFTAELLLLYVAQRFQEWAAGAAKGGVDASIGRTPLRLPP------PLAPDLERFDLESAKFDCAIVGGSKD 342
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A836CKC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC8_9STRA) HSP 1 Score: 184 bits (468), Expect = 1.360e-49 Identity = 113/280 (40.36%), Postives = 159/280 (56.79%), Query Frame = 1
Query: 37 TEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPAL--YEAAGW 870
TE+QL+VLF KC+TPGA IV+ GGSI+A D + Y + L + + LCP A V N AR GSLT GMC LG VD+L +EFSLND+ Y + A YEL LR ALT++QHAPAV ++FWG F +SAQ+ H + + YGVTG+SMRD+VW ++A+ AP+ + + +D HHP VH + +++AL+++ + W+ + R LLP L P++PEL D+ +C+ + G L YE GW
Sbjct: 69 TERQLQVLFWKCITPGARIVLGVLGGSISA-----FEDVS-YQYPLGKFLRGLCPFATVEVHNGARAAHGSLTVGMCARCGLGQHVDMLILEFSLNDWSHYHRHNETACASYELALRTALTSFQHAPAVLGLFFWGPYFTKQSAQDYHEPLCKHYGVTGISMRDLVWPYIEAQKAPWTKRTDVCSD-SHHPTPAVHLYTANLIALYVSGVFLDWSK--NVTVTAPTRRLSSLLPPLALPEPISPELGRLDLIRGKLKCKWSIDSVYGSESRLELYENEGW 339
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A835YLT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLT4_9STRA) HSP 1 Score: 170 bits (431), Expect = 2.860e-43 Identity = 108/288 (37.50%), Postives = 151/288 (52.43%), Query Frame = 1
Query: 31 DITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVG-----GAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPR---EGPAPALYEAAGW 870
++T+ QLE F KCVTPG+++ V + GGSIT H + Y+ L + ++CP A VT +N AR G+LT G+C + +D+ EF+LND QYT G FSA PYEL++R A T HESAQE H V R YGVTG+S+RD+VW A+ APYA + + +D HHPNA+ + +++ L++A++ V WA +GE A R L L PL PEL +D+ F C + G P G P + +GW
Sbjct: 79 EVTDLQLEPFFRKCVTPGSAVRVGAIGGSIT-----HAPTS--YVWSLGALLGEMCPHANVTALNGARSSHGALTLGLCARAVTHAALDVAVAEFALNDLGQYTRAEGAFRGQFSALPYELMMRNAFT-------------------HESAQEAHEEVGRRYGVTGLSLRDLVWPYFTAKRAPYAARGDVCSD-LHHPNAQFQHFTAELVLLYIAERFVEWATR---VRSGEASNATRGLAPLALPPPLHPELERFDLTHGGFECALVGAPSIKMPGRLPEMPVMSGW 336
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A835Z775_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z775_9STRA) HSP 1 Score: 157 bits (396), Expect = 1.540e-41 Identity = 92/215 (42.79%), Postives = 123/215 (57.21%), Query Frame = 1
Query: 37 TEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTV-GGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRW 678
TE QL +F KCVTPGA I V + GGSIT + G+ + + + LCP+A V N AR G+LT G+C ++ P +D+ +EFSLND QYT+ G FS+ PYEL R LT PAV+ + FWG+ F ++SAQ H V + YGVTG+S+RD+VW AP+ATK + +D HHPNA VH + A H + W
Sbjct: 14 TEAQLRNVFLKCVTPGADINVGAIGGSITEHDDSWAGNFSALL-------SHLCPRAQVRMHNGARASHGALTLGLCARAVMAPELDIAMLEFSLNDQGQYTLPNGTFSSLPYELATRTVLTGTDPTPAVFGISFWGRSFTYDSAQPYHEEVHKLYGVTGISLRDMVWPYFSKGRAPFATKADVCSDV-HHPNAFVHGLTAQVSA-HTNMNELTW 219
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A7S1SUP4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SUP4_9CHLO) HSP 1 Score: 84.3 bits (207), Expect = 5.950e-14 Identity = 72/225 (32.00%), Postives = 113/225 (50.22%), Query Frame = 1
Query: 7 LPFLLKPPDITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFS-----AAPYELLLRAALTAYQHAPAVYSVYFWGQMFR-HESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQ 663
+P+++ P + T+ +L + +K + G +VVA+ GGS+TAGG D+ Y + A +A P A V A+G T S T CL L+G VD+L VEF+LND G F A YE LLR A Y A A + + FWGQ F + H A+A YG+ V++ + + + AR +T+ + AD K HP ++ + ++ + + +
Sbjct: 3 IPWVIIPQE-TQWRLHAVLDKA-SSGGEVVVAAVGGSVTAGGAVRWQDS--YASQFAHLLALAFPAAQVRLELGAKGDTTSALTAFCLETLVGEAVDVLFVEFTLND------GVDFHRLKEPTATYENLLRRAAVTYPSA-ATFGIGFWGQFFSLGRNFYTRHRALAAHYGLGWVAVDPLARAMVKAR---LSTRAKMTADQKGHPRNETYHMIAQLMLVGMVE 213 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10699 ID=mRNA_10699|Name=jgi.p|Trimin1|174057|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1353bp|location=Sequence derived from alignment at Contig_110:142450..143802+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCCCTGCCATTTCTTCTCAAACCCCCAGACATCACCGAGCAGCAGCTback to top protein sequence of jgi.p|Trimin1|174057 >Trimin1|174057|e_gw1.110.13.1 ID=Trimin1|174057|e_gw1.110.13.1|Name=jgi.p|Trimin1|174057|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=451bp MPLPFLLKPPDITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDback to top mRNA from alignment at Contig_110:142450..143802+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10699 ID=mRNA_10699|Name=jgi.p|Trimin1|174057|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1353bp|location=Sequence derived from alignment at Contig_110:142450..143802+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_110:142450..143802+ >mRNA_10699 ID=mRNA_10699|Name=jgi.p|Trimin1|174057|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1353bp|location=Sequence derived from alignment at Contig_110:142450..143802+ (Tribonema minus UTEX_B_3156 )back to top |