mRNA_10699 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174057
Unique NamemRNA_10699
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A835ZGF8_9STRA (SGNH_hydro domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF8_9STRA)

HSP 1 Score: 883 bits (2281), Expect = 0.000e+0
Identity = 450/450 (100.00%), Postives = 450/450 (100.00%), Query Frame = 1
Query:    1 MPLPFLLKPPDITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTDVRLDSQECVQATRTAAEGASLIIDGESAPARCAVLLVVGGESAPPCVLCAPPLPLLLRFALCEGRCSRRVSTPRRRHVCRWRCSVPYVRDGTAGRSRRAAAALRSSRPRTRVQRGSAQAHTVLRADCRRTHARRSQATIVHEGLCTYRVA 1350
            MPLPFLLKPPDITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTDVRLDSQECVQATRTAAEGASLIIDGESAPARCAVLLVVGGESAPPCVLCAPPLPLLLRFALCEGRCSRRVSTPRRRHVCRWRCSVPYVRDGTAGRSRRAAAALRSSRPRTRVQRGSAQAHTVLRADCRRTHARRSQATIVHEGLCTYRVA
Sbjct:    1 MPLPFLLKPPDITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTDVRLDSQECVQATRTAAEGASLIIDGESAPARCAVLLVVGGESAPPCVLCAPPLPLLLRFALCEGRCSRRVSTPRRRHVCRWRCSVPYVRDGTAGRSRRAAAALRSSRPRTRVQRGSAQAHTVLRADCRRTHARRSQATIVHEGLCTYRVA 450          
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A836CKM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM3_9STRA)

HSP 1 Score: 425 bits (1092), Expect = 9.790e-144
Identity = 219/325 (67.38%), Postives = 252/325 (77.54%), Query Frame = 1
Query:   31 DITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTDVRLDSQECVQATRTAAEGASLIIDGESAPARCAVL 1005
            D T +QLEVLF+KCVTPGASI V + GGSITAG GA VGD N YIHR+A  V + CP A V+ +NAARGGTGSLTTGMCL N+LGP VDLLA+EFSLND EQYTVGG FSAAPYELL RAAL+A+ HAPA+Y ++FWG  F+H SAQ  HLAVAR YGVTGVSMRDVVW  LDA + PYAT++A+LAD +HHP+A VH HLGDI++LH+A+ L RWA A   A A  RR A  LLP A L  PLAPELA YDV A+ F CE+AG PREGP P+LY+  GW +F MGART  RLDSQ+CVQATR   EGASL++DGE     CA L
Sbjct:   27 DTTNEQLEVLFQKCVTPGASITVGAVGGSITAGAGAGVGDENAYIHRIAASVQRFCPAATVSAVNAARGGTGSLTTGMCLQNMLGPHVDLLAMEFSLNDREQYTVGGEFSAAPYELLTRAALSAFAHAPALYGIFFWGVNFQHASAQGAHLAVARRYGVTGVSMRDVVWPCLDAASPPYATRDAVLADARHHPSAAVHAHLGDIVSLHIAEALQRWAAAAAAAPA-LRRDARALLPLAALPEPLAPELAQYDVLANTFHCELAGWPREGPGPSLYQVDGWRKFEMGARTSARLDSQQCVQATR---EGASLLLDGELRGRECACL 347          
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A836CHL6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL6_9STRA)

HSP 1 Score: 188 bits (478), Expect = 3.310e-53
Identity = 107/244 (43.85%), Postives = 151/244 (61.89%), Query Frame = 1
Query:   37 TEQQLEVLFEKCVTPGASIVVASTGGSITA--GGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPL 762
            T++QLE L+ KC+TPG+ IV+   GGSI+A   GG++ G        L + +  +CP A V   NAA G TGSL  GMC  + LG  VD+L +EFSLND+  Y   G   +  YEL +RA LT++QHAPA+++++FWG  F++ SAQE H  +AR YG+TG+S+RD VW  L A+ AP+A +  ++ D  HHP    H + G +LAL++A++ + WA  D  A A +   A   LP   L  PL
Sbjct:   20 TDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYG------MTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLGQHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKD-SHHPTNAFHAYTGRLLALYVAERFLDWARRDDAAAALD--SARFALPPPTLPPPL 254          
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA)

HSP 1 Score: 201 bits (512), Expect = 6.750e-53
Identity = 119/270 (44.07%), Postives = 159/270 (58.89%), Query Frame = 1
Query:   34 ITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVG-GAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWAD--ADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPRE 834
            IT+QQL  LF KC+TPG++I + + GGSIT     H+  +  YI  + R +AQ+CP+A V T N AR   G+LT GMC   +  P +DL   EFSLND   YT   G FSA P+ELL R  L+AY  APAV++++FWG  F H+SAQ  H AV   Y VTG+S+RD+VW   +   APYA ++ +  D  HHPN R      ++L L++AQ+   WA   A GG  A   R   RL P      PLAP+L  +D+ +  F C I G  ++
Sbjct:   87 ITDQQLHPLFLKCITPGSTIRIGALGGSIT-----HLPSS--YIWPVGRLIAQMCPEATVETFNGARSSHGALTLGMCARTVTAPALDLAVSEFSLNDRAHYTADDGTFSALPFELLTRTLLSAYDPAPAVFNLFFWGMSFSHDSAQPWHEAVGEHYDVTGISLRDLVWPYYETSKAPYARRQDVCVDG-HHPNDRFQKFTAELLLLYVAQRFQEWAAGAAKGGVDASIGRTPLRLPP------PLAPDLERFDLESAKFDCAIVGGSKD 342          
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A836CKC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC8_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.360e-49
Identity = 113/280 (40.36%), Postives = 159/280 (56.79%), Query Frame = 1
Query:   37 TEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPREGPAPAL--YEAAGW 870
            TE+QL+VLF KC+TPGA IV+   GGSI+A       D + Y + L + +  LCP A V   N AR   GSLT GMC    LG  VD+L +EFSLND+  Y      + A YEL LR ALT++QHAPAV  ++FWG  F  +SAQ+ H  + + YGVTG+SMRD+VW  ++A+ AP+  +  + +D  HHP   VH +  +++AL+++   + W+      +    R    LLP   L  P++PEL   D+     +C+ +     G    L  YE  GW
Sbjct:   69 TERQLQVLFWKCITPGARIVLGVLGGSISA-----FEDVS-YQYPLGKFLRGLCPFATVEVHNGARAAHGSLTVGMCARCGLGQHVDMLILEFSLNDWSHYHRHNETACASYELALRTALTSFQHAPAVLGLFFWGPYFTKQSAQDYHEPLCKHYGVTGISMRDLVWPYIEAQKAPWTKRTDVCSD-SHHPTPAVHLYTANLIALYVSGVFLDWSK--NVTVTAPTRRLSSLLPPLALPEPISPELGRLDLIRGKLKCKWSIDSVYGSESRLELYENEGW 339          
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A835YLT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLT4_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.860e-43
Identity = 108/288 (37.50%), Postives = 151/288 (52.43%), Query Frame = 1
Query:   31 DITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVG-----GAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPLRTPLAPELAAYDVAAHAFRCEIAGTPR---EGPAPALYEAAGW 870
            ++T+ QLE  F KCVTPG+++ V + GGSIT     H   +  Y+  L   + ++CP A VT +N AR   G+LT G+C   +    +D+   EF+LND  QYT       G FSA PYEL++R A T                   HESAQE H  V R YGVTG+S+RD+VW    A+ APYA +  + +D  HHPNA+  +   +++ L++A++ V WA       +GE   A R L    L  PL PEL  +D+    F C + G P     G  P +   +GW
Sbjct:   79 EVTDLQLEPFFRKCVTPGSAVRVGAIGGSIT-----HAPTS--YVWSLGALLGEMCPHANVTALNGARSSHGALTLGLCARAVTHAALDVAVAEFALNDLGQYTRAEGAFRGQFSALPYELMMRNAFT-------------------HESAQEAHEEVGRRYGVTGLSLRDLVWPYFTAKRAPYAARGDVCSD-LHHPNAQFQHFTAELVLLYIAERFVEWATR---VRSGEASNATRGLAPLALPPPLHPELERFDLTHGGFECALVGAPSIKMPGRLPEMPVMSGW 336          
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A835Z775_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z775_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.540e-41
Identity = 92/215 (42.79%), Postives = 123/215 (57.21%), Query Frame = 1
Query:   37 TEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTV-GGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQMFRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQKLVRW 678
            TE QL  +F KCVTPGA I V + GGSIT    +  G+ +  +       + LCP+A V   N AR   G+LT G+C   ++ P +D+  +EFSLND  QYT+  G FS+ PYEL  R  LT     PAV+ + FWG+ F ++SAQ  H  V + YGVTG+S+RD+VW       AP+ATK  + +D  HHPNA VH     + A H     + W
Sbjct:   14 TEAQLRNVFLKCVTPGADINVGAIGGSITEHDDSWAGNFSALL-------SHLCPRAQVRMHNGARASHGALTLGLCARAVMAPELDIAMLEFSLNDQGQYTLPNGTFSSLPYELATRTVLTGTDPTPAVFGISFWGRSFTYDSAQPYHEEVHKLYGVTGISLRDMVWPYFSKGRAPFATKADVCSDV-HHPNAFVHGLTAQVSA-HTNMNELTW 219          
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Match: A0A7S1SUP4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SUP4_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 5.950e-14
Identity = 72/225 (32.00%), Postives = 113/225 (50.22%), Query Frame = 1
Query:    7 LPFLLKPPDITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGDANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDLLAVEFSLNDFEQYTVGGAFS-----AAPYELLLRAALTAYQHAPAVYSVYFWGQMFR-HESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPKHHPNARVHNHLGDILALHLAQ 663
            +P+++ P + T+ +L  + +K  + G  +VVA+ GGS+TAGG     D+  Y  + A  +A   P A V     A+G T S  T  CL  L+G  VD+L VEF+LND      G  F       A YE LLR A   Y  A A + + FWGQ F    +    H A+A  YG+  V++  +  + + AR    +T+  + AD K HP    ++ +  ++ + + +
Sbjct:    3 IPWVIIPQE-TQWRLHAVLDKA-SSGGEVVVAAVGGSVTAGGAVRWQDS--YASQFAHLLALAFPAAQVRLELGAKGDTTSALTAFCLETLVGEAVDVLFVEFTLND------GVDFHRLKEPTATYENLLRRAAVTYPSA-ATFGIGFWGQFFSLGRNFYTRHRALAAHYGLGWVAVDPLARAMVKAR---LSTRAKMTADQKGHPRNETYHMIAQLMLVGMVE 213          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174057 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835ZGF8_9STRA0.000e+0100.00SGNH_hydro domain-containing protein n=1 Tax=Tribo... [more]
A0A836CKM3_9STRA9.790e-14467.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHL6_9STRA3.310e-5343.85Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZKB1_9STRA6.750e-5344.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKC8_9STRA1.360e-4940.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLT4_9STRA2.860e-4337.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z775_9STRA1.540e-4142.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1SUP4_9CHLO5.950e-1432.00Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_110contigContig_110:142450..143802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174057|e_gw1.110.13.1
DescriptionGDSL-like Lipase/Acylhydrolase family
COG categoryE
Max annot lvl186801|Clostridia
EggNOG OGsCOG2755@1|root,COG2755@2|Bacteria,1TQG2@1239|Firmicutes,24A1G@186801|Clostridia,3WH2Q@541000|Ruminococcaceae
Evalue7.3e-08
Seed ortholog657322.FPR_17320
Hectar predicted targeting categoryother localisation
TranscriptId174379
TrackFilteredModels1
ProteinId174057
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174057gene_10699Tribonema minus UTEX_B_3156 geneContig_110 142450..143802 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10699_1exon_10699_1Tribonema minus UTEX_B_3156 exonContig_110 142450..143802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10699CDS_10699Tribonema minus UTEX_B_3156 CDSContig_110 142450..143802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174057Trimin1|174057|e_gw1.110.13.1Tribonema minus UTEX_B_3156 polypeptideContig_110 142450..143802 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10699 ID=mRNA_10699|Name=jgi.p|Trimin1|174057|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1353bp|location=Sequence derived from alignment at Contig_110:142450..143802+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCTGCCATTTCTTCTCAAACCCCCAGACATCACCGAGCAGCAGCT
GGAGGTGCTGTTTGAGAAGTGCGTGACGCCCGGCGCCTCCATAGTCGTGG
CCTCCACGGGCGGGTCCATCACCGCCGGCGGCGGCGCGCACGTCGGCGAC
GCCAACGTCTACATCCACAGGCTGGCGCGGCACGTCGCGCAGCTGTGCCC
GCAGGCGGCGGTGACGACGATCAATGCGGCGCGCGGCGGCACGGGCTCGC
TGACCACCGGCATGTGCCTGACGAACCTGCTCGGGCCGCGCGTCGACCTG
CTCGCGGTGGAGTTCAGCCTCAACGACTTCGAGCAGTACACGGTCGGCGG
CGCGTTCAGCGCGGCGCCGTATGAGCTGCTGCTGCGCGCGGCGCTCACCG
CGTACCAGCACGCGCCCGCCGTGTACTCGGTGTACTTCTGGGGGCAGATG
TTCCGCCACGAGTCGGCGCAGGAGCCGCACCTCGCAGTCGCGCGCGCGTA
CGGCGTCACGGGCGTGTCGATGCGCGACGTCGTCTGGTCCGCGCTCGACG
CGCGCGCAGCGCCCTACGCGACGAAGGAGGCCATCCTCGCCGACCCCAAG
CACCACCCCAACGCGCGCGTCCACAACCACCTCGGCGACATCCTCGCGCT
GCACCTCGCGCAGAAGCTCGTGCGCTGGGCGGACGCGGACGGCGGCGCGC
TCGCCGGCGAGCGCCGCGGCGCGCACCGCCTGCTGCCCTTTGCGCCGCTG
CGCACGCCGCTCGCGCCGGAGCTCGCCGCGTACGACGTCGCGGCGCACGC
GTTCCGCTGCGAGATCGCGGGCACGCCGCGCGAGGGCCCCGCGCCGGCGC
TGTACGAGGCCGCCGGCTGGGAGCGCTTCGCGATGGGCGCGCGCACGGAC
GTGCGCCTCGACTCGCAGGAGTGCGTGCAGGCGACACGCACGGCGGCGGA
GGGCGCGTCGCTGATCATCGACGGTGAGTCCGCGCCGGCGCGGTGCGCTG
TGTTGCTGGTGGTTGGTGGCGAGAGTGCTCCGCCGTGTGTTCTATGCGCG
CCGCCATTGCCGCTGCTGCTCCGCTTTGCCTTGTGCGAAGGGCGCTGTTC
GCGGCGTGTCTCTACGCCGCGGCGCCGTCATGTTTGCCGTTGGCGTTGCA
GTGTACCGTATGTTAGGGATGGCACAGCGGGGCGGTCGCGGCGCGCTGCC
GCAGCGCTCCGCAGTTCCCGCCCTCGCACGAGAGTGCAGAGGGGGAGCGC
GCAGGCGCACACAGTGCTGCGTGCAGATTGCAGGCGCACGCACGCGCGAA
GGTCGCAGGCCACAATTGTCCATGAGGGCCTCTGCACATACAGAGTGGCG
TGA
back to top

protein sequence of jgi.p|Trimin1|174057

>Trimin1|174057|e_gw1.110.13.1 ID=Trimin1|174057|e_gw1.110.13.1|Name=jgi.p|Trimin1|174057|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=451bp
MPLPFLLKPPDITEQQLEVLFEKCVTPGASIVVASTGGSITAGGGAHVGD
ANVYIHRLARHVAQLCPQAAVTTINAARGGTGSLTTGMCLTNLLGPRVDL
LAVEFSLNDFEQYTVGGAFSAAPYELLLRAALTAYQHAPAVYSVYFWGQM
FRHESAQEPHLAVARAYGVTGVSMRDVVWSALDARAAPYATKEAILADPK
HHPNARVHNHLGDILALHLAQKLVRWADADGGALAGERRGAHRLLPFAPL
RTPLAPELAAYDVAAHAFRCEIAGTPREGPAPALYEAAGWERFAMGARTD
VRLDSQECVQATRTAAEGASLIIDGESAPARCAVLLVVGGESAPPCVLCA
PPLPLLLRFALCEGRCSRRVSTPRRRHVCRWRCSVPYVRDGTAGRSRRAA
AALRSSRPRTRVQRGSAQAHTVLRADCRRTHARRSQATIVHEGLCTYRVA
*
back to top

mRNA from alignment at Contig_110:142450..143802+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10699 ID=mRNA_10699|Name=jgi.p|Trimin1|174057|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1353bp|location=Sequence derived from alignment at Contig_110:142450..143802+ (Tribonema minus UTEX_B_3156 )
ATGCCCCTGCCATTTCTTCTCAAACCCCCAGACATCACCGAGCAGCAGCT GGAGGTGCTGTTTGAGAAGTGCGTGACGCCCGGCGCCTCCATAGTCGTGG CCTCCACGGGCGGGTCCATCACCGCCGGCGGCGGCGCGCACGTCGGCGAC GCCAACGTCTACATCCACAGGCTGGCGCGGCACGTCGCGCAGCTGTGCCC GCAGGCGGCGGTGACGACGATCAATGCGGCGCGCGGCGGCACGGGCTCGC TGACCACCGGCATGTGCCTGACGAACCTGCTCGGGCCGCGCGTCGACCTG CTCGCGGTGGAGTTCAGCCTCAACGACTTCGAGCAGTACACGGTCGGCGG CGCGTTCAGCGCGGCGCCGTATGAGCTGCTGCTGCGCGCGGCGCTCACCG CGTACCAGCACGCGCCCGCCGTGTACTCGGTGTACTTCTGGGGGCAGATG TTCCGCCACGAGTCGGCGCAGGAGCCGCACCTCGCAGTCGCGCGCGCGTA CGGCGTCACGGGCGTGTCGATGCGCGACGTCGTCTGGTCCGCGCTCGACG CGCGCGCAGCGCCCTACGCGACGAAGGAGGCCATCCTCGCCGACCCCAAG CACCACCCCAACGCGCGCGTCCACAACCACCTCGGCGACATCCTCGCGCT GCACCTCGCGCAGAAGCTCGTGCGCTGGGCGGACGCGGACGGCGGCGCGC TCGCCGGCGAGCGCCGCGGCGCGCACCGCCTGCTGCCCTTTGCGCCGCTG CGCACGCCGCTCGCGCCGGAGCTCGCCGCGTACGACGTCGCGGCGCACGC GTTCCGCTGCGAGATCGCGGGCACGCCGCGCGAGGGCCCCGCGCCGGCGC TGTACGAGGCCGCCGGCTGGGAGCGCTTCGCGATGGGCGCGCGCACGGAC GTGCGCCTCGACTCGCAGGAGTGCGTGCAGGCGACACGCACGGCGGCGGA GGGCGCGTCGCTGATCATCGACGGTGAGTCCGCGCCGGCGCGGTGCGCTG TGTTGCTGGTGGTTGGTGGCGAGAGTGCTCCGCCGTGTGTTCTATGCGCG CCGCCATTGCCGCTGCTGCTCCGCTTTGCCTTGTGCGAAGGGCGCTGTTC GCGGCGTGTCTCTACGCCGCGGCGCCGTCATGTTTGCCGTTGGCGTTGCA GTGTACCGTATGTTAGGGATGGCACAGCGGGGCGGTCGCGGCGCGCTGCC GCAGCGCTCCGCAGTTCCCGCCCTCGCACGAGAGTGCAGAGGGGGAGCGC GCAGGCGCACACAGTGCTGCGTGCAGATTGCAGGCGCACGCACGCGCGAA GGTCGCAGGCCACAATTGTCCATGAGGGCCTCTGCACATACAGAGTGGCG TGA
back to top

Coding sequence (CDS) from alignment at Contig_110:142450..143802+

>mRNA_10699 ID=mRNA_10699|Name=jgi.p|Trimin1|174057|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1353bp|location=Sequence derived from alignment at Contig_110:142450..143802+ (Tribonema minus UTEX_B_3156 )
ATGCCCCTGCCATTTCTTCTCAAACCCCCAGACATCACCGAGCAGCAGCT
GGAGGTGCTGTTTGAGAAGTGCGTGACGCCCGGCGCCTCCATAGTCGTGG
CCTCCACGGGCGGGTCCATCACCGCCGGCGGCGGCGCGCACGTCGGCGAC
GCCAACGTCTACATCCACAGGCTGGCGCGGCACGTCGCGCAGCTGTGCCC
GCAGGCGGCGGTGACGACGATCAATGCGGCGCGCGGCGGCACGGGCTCGC
TGACCACCGGCATGTGCCTGACGAACCTGCTCGGGCCGCGCGTCGACCTG
CTCGCGGTGGAGTTCAGCCTCAACGACTTCGAGCAGTACACGGTCGGCGG
CGCGTTCAGCGCGGCGCCGTATGAGCTGCTGCTGCGCGCGGCGCTCACCG
CGTACCAGCACGCGCCCGCCGTGTACTCGGTGTACTTCTGGGGGCAGATG
TTCCGCCACGAGTCGGCGCAGGAGCCGCACCTCGCAGTCGCGCGCGCGTA
CGGCGTCACGGGCGTGTCGATGCGCGACGTCGTCTGGTCCGCGCTCGACG
CGCGCGCAGCGCCCTACGCGACGAAGGAGGCCATCCTCGCCGACCCCAAG
CACCACCCCAACGCGCGCGTCCACAACCACCTCGGCGACATCCTCGCGCT
GCACCTCGCGCAGAAGCTCGTGCGCTGGGCGGACGCGGACGGCGGCGCGC
TCGCCGGCGAGCGCCGCGGCGCGCACCGCCTGCTGCCCTTTGCGCCGCTG
CGCACGCCGCTCGCGCCGGAGCTCGCCGCGTACGACGTCGCGGCGCACGC
GTTCCGCTGCGAGATCGCGGGCACGCCGCGCGAGGGCCCCGCGCCGGCGC
TGTACGAGGCCGCCGGCTGGGAGCGCTTCGCGATGGGCGCGCGCACGGAC
GTGCGCCTCGACTCGCAGGAGTGCGTGCAGGCGACACGCACGGCGGCGGA
GGGCGCGTCGCTGATCATCGACGGTGAGTCCGCGCCGGCGCGGTGCGCTG
TGTTGCTGGTGGTTGGTGGCGAGAGTGCTCCGCCGTGTGTTCTATGCGCG
CCGCCATTGCCGCTGCTGCTCCGCTTTGCCTTGTGCGAAGGGCGCTGTTC
GCGGCGTGTCTCTACGCCGCGGCGCCGTCATGTTTGCCGTTGGCGTTGCA
GTGTACCGTATGTTAGGGATGGCACAGCGGGGCGGTCGCGGCGCGCTGCC
GCAGCGCTCCGCAGTTCCCGCCCTCGCACGAGAGTGCAGAGGGGGAGCGC
GCAGGCGCACACAGTGCTGCGTGCAGATTGCAGGCGCACGCACGCGCGAA
GGTCGCAGGCCACAATTGTCCATGAGGGCCTCTGCACATACAGAGTGGCG
TGA
back to top