mRNA_10681 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|7746
Unique NamemRNA_10681
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|7746 vs. uniprot
Match: A0A836CME7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME7_9STRA)

HSP 1 Score: 331 bits (849), Expect = 1.600e-112
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 3 
Query:  321 MAQHLRRKRPDIWCRSAQPAWLPLSGGNSGAAAHLLSPAVCNQALVWRALLQPAPXXXXXAAGTHTGTPSAHPRLAGPHERCEPLTQRPLARAARGGAACTAAPLSDARPSAGVCVHDARARVGRERGAPMRMHARAPLPLHRARRRCIAHAAAASRTPLRHCXXXXXXXXXXXXPRAPPPLHR 872
            MAQHLRRKRPDIWCRSAQPAWLPLSGGNSGAAAHLLSPAVCNQALVWRALLQPAPXXXXXAAGTHTGTPSAHPRLAGPHERCEPLTQRPLARAARGGAACTAAPLSDARPSAGVCVHDARARVGRERGAPMRMHARAPLPLHRARRRCIAHAAAASRTPLRHCXXXXXXXXXXX PRAPPPLHR
Sbjct:    1 MAQHLRRKRPDIWCRSAQPAWLPLSGGNSGAAAHLLSPAVCNQALVWRALLQPAPXXXXXAAGTHTGTPSAHPRLAGPHERCEPLTQRPLARAARGGAACTAAPLSDARPSAGVCVHDARARVGRERGAPMRMHARAPLPLHRARRRCIAHAAAASRTPLRHCXXXXXXXXXXXPPRAPPPLHR 184
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|7746 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CME7_9STRA1.600e-11299.46Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_110contigContig_110:17991..18864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|7746|CE7745_193
Hectar predicted targeting categoryother localisation
TranscriptId8068
TrackFilteredModels1
ProteinId7746
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|7746gene_10681Tribonema minus UTEX_B_3156 geneContig_110 17991..18864 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10681_1exon_10681_1Tribonema minus UTEX_B_3156 exonContig_110 17991..18864 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10681UTR5_10681Tribonema minus UTEX_B_3156 five_prime_UTRContig_110 17991..18310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10681CDS_10681Tribonema minus UTEX_B_3156 CDSContig_110 18311..18864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|7746Trimin1|7746|CE7745_193Tribonema minus UTEX_B_3156 polypeptideContig_110 18311..18864 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10681 ID=mRNA_10681|Name=jgi.p|Trimin1|7746|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=874bp|location=Sequence derived from alignment at Contig_110:17991..18864+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACGAAGTGTAAGTGCTAGCCTTCTTTTTTCCTACTGTACTCCATCGCGAA
GAAGTGCGCGCTTTTGAGATCGCTGCTGACGCACTCAAAGATTGCAAAAA
AAAGGCGAATGCCAGAAAAAAAAAAGAGCACGAAGCAGACACATTCGAGA
TGCACATTTACACAAAAGGGCCTGCTGATGGAACAACAAGACATACCAGC
ACTAGCGCAGCAGCAGCAGCAGCAGCGCAGACTGCCTTCTGAGGAAGTGC
TGCTGAACGACTGCACTGCCATGGAGATCGCACGCGCGCGCCAGCAGCGC
GCTACACTTGTGCCAGTAAAATGGCCCAGCATTTGCGCCGCAAGCGCCCT
GACATCTGGTGCAGAAGTGCACAGCCTGCATGGCTGCCACTGTCAGGCGG
GAACAGCGGCGCAGCGGCGCACCTGCTGAGCCCTGCTGTTTGCAATCAGG
CGCTGGTGTGGCGCGCGCTGCTGCAGCCGGCGCCGCCGCCGCCGCCGCCC
GCCGCCGGCACGCACACGGGCACCCCTTCAGCGCACCCCCGGCTCGCCGG
CCCGCACGAGCGCTGCGAACCTCTCACACAAAGGCCGCTCGCACGCGCCG
CGCGCGGCGGCGCTGCGTGCACTGCCGCGCCGCTCTCCGACGCCCGCCCC
TCCGCCGGCGTGTGTGTACACGATGCACGTGCGCGCGTCGGCCGCGAGAG
GGGGGCTCCGATGCGCATGCACGCACGCGCGCCGCTCCCCCTTCATCGCG
CACGCCGCCGCTGCATCGCGCATGCCGCTGCTGCATCGCGCACGCCGCTG
CGGCATTGCGCACGCCGCTGCTGCATCGCGCACGCCGCTCCCCCCCCGCG
CGCGCCGCCGCCGCTGCATCGCGC
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protein sequence of jgi.p|Trimin1|7746

>Trimin1|7746|CE7745_193 ID=Trimin1|7746|CE7745_193|Name=jgi.p|Trimin1|7746|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=184bp
MAQHLRRKRPDIWCRSAQPAWLPLSGGNSGAAAHLLSPAVCNQALVWRAL
LQPAPPPPPPAAGTHTGTPSAHPRLAGPHERCEPLTQRPLARAARGGAAC
TAAPLSDARPSAGVCVHDARARVGRERGAPMRMHARAPLPLHRARRRCIA
HAAAASRTPLRHCARRCCIAHAAPPPRAPPPLHR
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mRNA from alignment at Contig_110:17991..18864+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10681 ID=mRNA_10681|Name=jgi.p|Trimin1|7746|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=874bp|location=Sequence derived from alignment at Contig_110:17991..18864+ (Tribonema minus UTEX_B_3156 )
ACGAAGTGTAAGTGCTAGCCTTCTTTTTTCCTACTGTACTCCATCGCGAA
GAAGTGCGCGCTTTTGAGATCGCTGCTGACGCACTCAAAGATTGCAAAAA
AAAGGCGAATGCCAGAAAAAAAAAAGAGCACGAAGCAGACACATTCGAGA
TGCACATTTACACAAAAGGGCCTGCTGATGGAACAACAAGACATACCAGC
ACTAGCGCAGCAGCAGCAGCAGCAGCGCAGACTGCCTTCTGAGGAAGTGC
TGCTGAACGACTGCACTGCCATGGAGATCGCACGCGCGCGCCAGCAGCGC
GCTACACTTGTGCCAGTAAAATGGCCCAGCATTTGCGCCGCAAGCGCCCT
GACATCTGGTGCAGAAGTGCACAGCCTGCATGGCTGCCACTGTCAGGCGG
GAACAGCGGCGCAGCGGCGCACCTGCTGAGCCCTGCTGTTTGCAATCAGG
CGCTGGTGTGGCGCGCGCTGCTGCAGCCGGCGCCGCCGCCGCCGCCGCCC
GCCGCCGGCACGCACACGGGCACCCCTTCAGCGCACCCCCGGCTCGCCGG
CCCGCACGAGCGCTGCGAACCTCTCACACAAAGGCCGCTCGCACGCGCCG
CGCGCGGCGGCGCTGCGTGCACTGCCGCGCCGCTCTCCGACGCCCGCCCC
TCCGCCGGCGTGTGTGTACACGATGCACGTGCGCGCGTCGGCCGCGAGAG
GGGGGCTCCGATGCGCATGCACGCACGCGCGCCGCTCCCCCTTCATCGCG
CACGCCGCCGCTGCATCGCGCATGCCGCTGCTGCATCGCGCACGCCGCTG
CGGCATTGCGCACGCCGCTGCTGCATCGCGCACGCCGCTCCCCCCCCGCG
CGCGCCGCCGCCGCTGCATCGCGC
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Coding sequence (CDS) from alignment at Contig_110:17991..18864+

>mRNA_10681 ID=mRNA_10681|Name=jgi.p|Trimin1|7746|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=554bp|location=Sequence derived from alignment at Contig_110:17991..18864+ (Tribonema minus UTEX_B_3156 )
ATGGCCCAGCATTTGCGCCGCAAGCGCCCTGACATCTGGTGCAGAAGTGC
ACAGCCTGCATGGCTGCCACTGTCAGGCGGGAACAGCGGCGCAGCGGCGC
ACCTGCTGAGCCCTGCTGTTTGCAATCAGGCGCTGGTGTGGCGCGCGCTG
CTGCAGCCGGCGCCGCCGCCGCCGCCGCCCGCCGCCGGCACGCACACGGG
CACCCCTTCAGCGCACCCCCGGCTCGCCGGCCCGCACGAGCGCTGCGAAC
CTCTCACACAAAGGCCGCTCGCACGCGCCGCGCGCGGCGGCGCTGCGTGC
ACTGCCGCGCCGCTCTCCGACGCCCGCCCCTCCGCCGGCGTGTGTGTACA
CGATGCACGTGCGCGCGTCGGCCGCGAGAGGGGGGCTCCGATGCGCATGC
ACGCACGCGCGCCGCTCCCCCTTCATCGCGCACGCCGCCGCTGCATCGCG
CATGCCGCTGCTGCATCGCGCACGCCGCTGCGGCATTGCGCACGCCGCTG
CTGCATCGCGCACGCCGCTCCCCCCCCGCGCGCGCCGCCGCCGCTGCATC
GCGC
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