mRNA_10665 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174954
Unique NamemRNA_10665
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Match: A0A835ZH31_9STRA (Peptidase family M48-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH31_9STRA)

HSP 1 Score: 538 bits (1386), Expect = 4.380e-193
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1
Query:    1 QHPFDQEATAALKRLPGLEAAVRSFIPIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLKRGAELVDAGPVAPPPPVAR 831
            QHPFDQEATAALKRLPGLEAAVRSFIPIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLKRGAELVDAGPVAPPPPVAR
Sbjct:    1 QHPFDQEATAALKRLPGLEAAVRSFIPIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLKRGAELVDAGPVAPPPPVAR 277          
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Match: D8LQV2_ECTSI (Putative peptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV2_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 8.890e-122
Identity = 177/263 (67.30%), Postives = 213/263 (80.99%), Query Frame = 1
Query:    1 QHPFDQEATAALKRLPGLEAAVRSFIPIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLKRGAEL 789
            QHPFD EAT  L+R PGLE A+R  +P +ED +++DNIAN++LVGP Q+ S+H  LL+AC ILDMQPP++Y+RQNPTPNAYTLA+ GKKPFIVLH+SL+DLM P E+QAVIAHELGHLKCEHGIW+T A V+ +GL    F LG+ VA+ LGLRR L RW   AE +CDRAA+LVAQDVNVVVSTLLKL GGSV  A ELSV EFLKQA AYDLAS+TR+G+LL+     E THPLPV+RA+EL  +S SPQYLG+++RG  L
Sbjct:  132 QHPFDLEATGMLRRFPGLEMAIRGAVPAIEDAVFMDNIANSILVGPRQMASLHGLLLEACRILDMQPPDLYIRQNPTPNAYTLAIRGKKPFIVLHTSLLDLMEPEEVQAVIAHELGHLKCEHGIWVTLATVVANGLYGRGF-LGAFVADRLGLRRRLMRWSRAAEFTCDRAAMLVAQDVNVVVSTLLKLAGGSVSQASELSVPEFLKQASAYDLASQTRIGKLLKREQSLELTHPLPVVRARELVKFSESPQYLGLVRRGLPL 393          
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Match: A0A6V1X7Z1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1X7Z1_HETAK)

HSP 1 Score: 299 bits (765), Expect = 1.280e-97
Identity = 153/272 (56.25%), Postives = 203/272 (74.63%), Query Frame = 1
Query:    1 QHPFDQEATAALKRLPGLEAAVRSFIPIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQ-PPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGG----SVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLKRGAELVDAG 801
            +HP D++ATA L+RLPGLE  VR   P+VE+ +YLDNIA ++ VGP Q+ ++H+ L+ AC ILD++ PP++YV+QNP+PNAYTLAV G+KPFIVLH+SLIDLM+P E+QAV+AHELGH+KCEHG+W++AAN++  GL       G +++EAL    L+  W+  AEL+CDRAALLVAQD  VVVST+LKLVGG    ++     +S  EFLKQA+ Y  A  +R+GRLL +      THPLPV+RAQEL  W+R P+Y G+L+RGA L   G
Sbjct:   68 RHPVDRQATAQLQRLPGLEQIVRRATPLVEEAVYLDNIATSIKVGPGQMPALHQLLVDACRILDIKDPPQLYVKQNPSPNAYTLAVQGRKPFIVLHTSLIDLMTPQEVQAVLAHELGHIKCEHGLWLSAANLVALGLLAVGGVPGQLLSEALS--SLIMPWQRAAELTCDRAALLVAQDPAVVVSTILKLVGGVGGPALGEYGGVSPDEFLKQAEEYAEARSSRVGRLLTADQDRALTHPLPVVRAQELARWARGPEYRGLLRRGAPLAGGG 337          
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Match: K9T9Q6_9CYAN (Zn-dependent protease with chaperone function n=3 Tax=Pleurocapsales TaxID=52604 RepID=K9T9Q6_9CYAN)

HSP 1 Score: 276 bits (706), Expect = 1.970e-89
Identity = 138/262 (52.67%), Postives = 196/262 (74.81%), Query Frame = 1
Query:    1 QHPFDQEATAALKRLPGLEAAVRSFI-PIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAAN--VLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLKR 777
            +HP D +AT ALK+LPGL+  VRS + P+ E   YL+NIA+++LVG +QL  +HK LL+AC ILD++PP++YV+QNP PNAYT A+ GK+PF+VLH+SLI++++P E+QAV+AHELGHLKCEHG+++T  N  VL +GL  S    G+V+A++L  R  + +W   AE SCDRAALL  QD  VV+S L+KL GGS   A +L++  F++QA+AYD  S T LG++L++   A+ THP+PV+RA+E+D W+ S  Y  +L+R
Sbjct:   17 RHPLDLQATTALKQLPGLDMLVRSLLGPVAEQFFYLNNIASSILVGENQLPHLHKLLLEACQILDLEPPQLYVQQNPIPNAYTFAMRGKQPFMVLHTSLIEMLTPEEIQAVMAHELGHLKCEHGVYLTLVNIVVLAAGLLPS---WGTVIAQSL--REQMLQWVRCAEFSCDRAALLAIQDPKVVMSVLMKLTGGSPTLAPQLNLDAFIEQARAYDAISETELGQMLKTAQTAQLTHPVPVLRAREIDRWASSQDYQRLLQR 273          
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Match: A0A1Y1I8J9_KLENI (Peptidase family M48 family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I8J9_KLENI)

HSP 1 Score: 277 bits (708), Expect = 6.080e-89
Identity = 144/272 (52.94%), Postives = 188/272 (69.12%), Query Frame = 1
Query:    1 QHPFDQEATAALKRLPGL-EAAVRSFIPIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQY---LGVLKRGAELVDAGP 804
            QHP D++ TA L+  PG+ E A   F P+ E  + L+NIA +V VG HQL  ++K L +A  ILDM  P++Y+RQNPTPNAYTLA++G+KPFIV+H+SL++L++PAELQAV+AHE+GHLKC+HG+W+T ANVL    A S  GLG  +  A  L   L RW   AEL+CDRAALLVAQD  VVVS L+KL GG    AD+L+V  FL QA++YD AS +  G  LR+    + +HPLPV+RA+E+D WSR  QY   +G +   A  V   P
Sbjct:   72 QHPLDRQNTAILRAFPGIQEIAKMLFSPVAEQVLLLENIATSVRVGEHQLTRVYKLLTEAADILDMDAPDLYIRQNPTPNAYTLAIAGRKPFIVVHTSLVELLTPAELQAVLAHEMGHLKCDHGVWLTFANVLAMS-AGSLPGLGRFI--AANLEDKLMRWLRAAELTCDRAALLVAQDPKVVVSVLMKLAGGCPSLADDLNVDSFLNQARSYDEASNSPFGWYLRNAQTRQLSHPLPVLRAREIDEWSRGKQYQLLMGAVSTAAASVGGSP 340          
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Match: A0A7C3PD19_9CYAN (M48 family peptidase n=1 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3PD19_9CYAN)

HSP 1 Score: 275 bits (702), Expect = 7.970e-89
Identity = 139/264 (52.65%), Postives = 187/264 (70.83%), Query Frame = 1
Query:    1 QHPFDQEATAALKRLPGLEAAVRSFI-PIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLKRGAEL 789
            +HP D +ATA LK LPGL+ AVRS + PI E   YL+NIA +V V   QL  +HK LL+AC +LD++PP++YVRQ+P PNAYT A+ GK+PFIV+H+SLIDL++PAE+QAVIAHELGHLKCEH +++T AN+L     +   G GSV+A+   L+  L  W   AE SCDRAALL  QD  VV S L+KL GGS   A +L++  FL QA+AY+  S+ +LG +L+    A+ THP+PV+RA+E+D W+ S  Y  +L++   L
Sbjct:   17 RHPLDLQATANLKSLPGLDLAVRSLLGPIAEQVFYLENIAASVQVSEQQLPDLHKLLLEACQVLDLEPPQLYVRQHPVPNAYTFAMRGKQPFIVVHTSLIDLLTPAEIQAVIAHELGHLKCEHSVYLTLANILVLATGQLP-GAGSVLAQ--NLQAQLMEWVRCAEFSCDRAALLATQDARVVASVLMKLAGGSPTLASQLNLDAFLAQARAYEDISKNQLGAMLKQAATAQLTHPVPVLRAKEIDRWASSKDYHDLLQKRPNL 277          
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Match: UPI0019DB20E1 (M48 family metallopeptidase n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI0019DB20E1)

HSP 1 Score: 275 bits (702), Expect = 7.970e-89
Identity = 137/260 (52.69%), Postives = 193/260 (74.23%), Query Frame = 1
Query:    1 QHPFDQEATAALKRLPGLEAAVRSFI-PIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGL-GSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLK 774
            +HP D +AT +LK+ PGL+ A+RS + P+ E   YL+NIA++VLV   QL  +HK LL+AC ILD++PP++YV+QNP PNAYT A+ GK+PF+VLH+SLI++++P E+QAVIAHELGHLKCEHG+++T AN++   LA +     G+++A++L  + L  RW   AE SCDRAALLV QD  VV+S L+KL GGS   A +L++  F++QA+AYD   +T+LG LL+    A+ THP+PVIRA+E+D W  S +Y  +LK
Sbjct:   17 RHPLDLQATTSLKQFPGLDIAIRSLLGPVAEQFFYLNNIASSVLVSEKQLPYLHKLLLEACQILDLEPPQLYVQQNPVPNAYTFAMRGKQPFMVLHTSLIEMLTPEEIQAVIAHELGHLKCEHGVYLTLANIMV--LAATLLPTWGAILAQSLQEQML--RWIRCAEFSCDRAALLVTQDPKVVMSVLMKLAGGSPSLASQLNLEAFIEQARAYDAVDQTQLGELLKQAQTAQLTHPVPVIRAREIDRWGSSFEYQNILK 272          
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Match: UPI001682EAB3 (M48 family metallopeptidase n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001682EAB3)

HSP 1 Score: 274 bits (700), Expect = 1.500e-88
Identity = 134/259 (51.74%), Postives = 193/259 (74.52%), Query Frame = 1
Query:    1 QHPFDQEATAALKRLPGLEAAVRSFI-PIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLK 774
            +HP DQE+T ALK+LPGL+  +R+ I P+ E   YL+NIA++VLVG  QL  +H  LL+AC +LD++PP++YVRQ+P PNAYT A+ GK+PFIV+H+SL+DL++P E+QAVIAHELGHLKC+HG+++T AN+L+  LA +   +G V+A+AL  +  +  W   AE +CDRAALLVAQD  +V S L+KL GGS   + +L+V  FL+QA++YD  S  ++G +L+     + THP+PV+RA+E+D W+ S +Y  +LK
Sbjct:   16 RHPLDQESTQALKQLPGLDILIRNLIGPLGEQFFYLENIASSVLVGEQQLPQLHTLLLEACEVLDLEPPQLYVRQHPVPNAYTFAMRGKQPFIVVHTSLLDLLTPEEIQAVIAHELGHLKCDHGVYLTLANLLS--LAATQLPMGEVLAQALQTQ--MMEWVRCAEFTCDRAALLVAQDPRIVASLLMKLSGGSPTLSSQLNVEAFLEQARSYDAISSDQIGDMLKQIRTQDLTHPVPVLRAREVDRWASSQEYFQLLK 270          
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Match: UPI001F43F90C (M48 family metallopeptidase n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F43F90C)

HSP 1 Score: 274 bits (700), Expect = 1.550e-88
Identity = 138/259 (53.28%), Postives = 188/259 (72.59%), Query Frame = 1
Query:    1 QHPFDQEATAALKRLPGLEAAVRSFI-PIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLK 774
            +HP D EATA LK+LPGL+  VR+ + P+ E   YL+NIA++VLVG  QL  +HK LL AC ILD++PP++YVRQ+P PNAYT A+ GK+PFIV+H+SL++L++P E+QAVIAHELGHLKCEHG+++T AN+L     +  +G G  VA+AL  +  L  W   AE SCDRAALL  Q+  VV S L+KL GGS   A +L++  FL QA+AYD  S+ ++G LL+  + A+ THP+PV+RA+E+D WS S  Y  +L+
Sbjct:   17 RHPLDLEATANLKQLPGLDVMVRNLLGPLAEQFFYLENIASSVLVGEQQLPDLHKLLLDACQILDLEPPQLYVRQHPVPNAYTFAMRGKQPFIVIHTSLLELLTPDEIQAVIAHELGHLKCEHGVYLTLANLLVLAAGQLPWGAG--VAQALQTQ--LLEWVRCAEFSCDRAALLATQNPRVVASVLMKLAGGSPTLASQLNLDAFLAQARAYDEISKDQIGELLKQAMTAQLTHPVPVLRAREIDRWSSSQAYQALLE 271          
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Match: A0A4D9CNP9_9STRA (Peptidase_M48 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNP9_9STRA)

HSP 1 Score: 277 bits (709), Expect = 1.870e-88
Identity = 135/262 (51.53%), Postives = 192/262 (73.28%), Query Frame = 1
Query:    1 QHPFDQEATAALKRLPGLEAAVRSFIPIVEDTIYLDNIANAVLVGPHQLQSIHKSLLQACAILDMQP-PEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLIDLMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEALGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADELSVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRSPQYLGVLKRGA 783
            +HP DQ+ T  L+ LPGLE  VR  + ++E+ +Y+DNI++A+LVGP Q+ S+H SL++A +ILD+   PE+Y++Q+P PNAY +A+ G++PFIV+H+SL+DL+SPAE+Q V+AHEL H+KCEHG++ITAAN L  GL      LG V+ + L    LL  W   AE SCDR ALLV+QD++ V+S LLKLVGGS + A +LS   FL+QA++YD A  + LGRL++S +    THPLPV+R +EL+ W +S  Y G++ RG+
Sbjct:  101 RHPLDQQITEQLRLLPGLEWGVRQAMRVLEEAVYIDNISSAILVGPTQMPSLHSSLVEAASILDLPVLPELYIKQSPVPNAYCMAIQGRRPFIVMHTSLLDLLSPAEVQVVLAHELSHIKCEHGVFITAANALALGLYSLGGSLGRVLGDRLS--SLLYAWLRAAEFSCDRGALLVSQDLDTVLSALLKLVGGSQQLAGQLSTEAFLQQARSYDQAVGSPLGRLIKSQMEPGLTHPLPVLRVRELERWYKSDMYTGIIARGS 360          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174954 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZH31_9STRA4.380e-193100.00Peptidase family M48-domain-containing protein n=1... [more]
D8LQV2_ECTSI8.890e-12267.30Putative peptidase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6V1X7Z1_HETAK1.280e-9756.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K9T9Q6_9CYAN1.970e-8952.67Zn-dependent protease with chaperone function n=3 ... [more]
A0A1Y1I8J9_KLENI6.080e-8952.94Peptidase family M48 family protein n=1 Tax=Klebso... [more]
A0A7C3PD19_9CYAN7.970e-8952.65M48 family peptidase n=1 Tax=Oscillatoriales cyano... [more]
UPI0019DB20E17.970e-8952.69M48 family metallopeptidase n=1 Tax=Pleurocapsales... [more]
UPI001682EAB31.500e-8851.74M48 family metallopeptidase n=1 Tax=Pseudanabaena ... [more]
UPI001F43F90C1.550e-8853.28M48 family metallopeptidase n=1 Tax=Leptodesmis si... [more]
A0A4D9CNP9_9STRA1.870e-8851.53Peptidase_M48 domain-containing protein n=2 Tax=Mo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_119contigContig_119:406771..409905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174954|e_gw1.119.30.1
DescriptionPeptidase family M48
COG categoryE
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0501@1|root,2QUG6@2759|Eukaryota
Evalue1.46e-122
Seed ortholog2880.D8LQV2
Hectar predicted targeting categoryother localisation
TranscriptId175276
TrackFilteredModels1
ProteinId174954
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174954gene_10665Tribonema minus UTEX_B_3156 geneContig_119 406771..409905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174954Trimin1|174954|e_gw1.119.30.1Tribonema minus UTEX_B_3156 polypeptideContig_119 406771..409905 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10665_1exon_10665_1Tribonema minus UTEX_B_3156 exonContig_119 406771..406860 +
exon_10665_2exon_10665_2Tribonema minus UTEX_B_3156 exonContig_119 407145..407252 +
exon_10665_3exon_10665_3Tribonema minus UTEX_B_3156 exonContig_119 407550..407641 +
exon_10665_4exon_10665_4Tribonema minus UTEX_B_3156 exonContig_119 407971..408244 +
exon_10665_5exon_10665_5Tribonema minus UTEX_B_3156 exonContig_119 409636..409905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10665CDS_10665Tribonema minus UTEX_B_3156 CDSContig_119 406771..406860 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10665 ID=mRNA_10665|Name=jgi.p|Trimin1|174954|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=834bp|location=Sequence derived from alignment at Contig_119:406771..409905+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCATCCCTTTGATCAAGAGGCGACTGCGGCATTGAAGCGGTTACCGGG
GCTGGAAGCTGCAGTTAGGAGCTTTATTCCTATTGTTGAGGACACCATAT
ACCTGGACAACATCGCCAACGCTGTGCTGGTGGGGCCTCACCAGCTGCAA
TCCATCCACAAGTCGCTGCTGCAGGCGTGCGCCATCCTGGACATGCAGCC
CCCAGAGGTCTACGTGCGGCAGAACCCGACACCCAACGCCTACACCCTGG
CAGTCAGCGGCAAGAAGCCCTTCATCGTACTGCACAGCAGCCTGATCGAC
CTCATGAGCCCCGCGGAGCTCCAGGCCGTCATCGCGCACGAGCTCGGGCA
CCTCAAGTGCGAGCACGGCATCTGGATCACTGCGGCGAACGTGCTGACGA
GCGGCCTGGCGCGGTCCGCGTTTGGCCTCGGCAGCGTCGTGGCGGAGGCG
CTTGGGCTGCGGCGGCTGCTGCAGCGGTGGCGCCTGACAGCGGAGCTCAG
CTGTGACAGGGCGGCGCTGCTCGTGGCGCAGGACGTGAACGTCGTGGTGT
CCACGCTACTCAAGCTGGTCGGCGGCAGCGTGCGCAACGCGGACGAGCTG
AGCGTGCACGAGTTCCTCAAGCAGGCCAAGGCGTACGACCTCGCCAGCCG
CACGCGCCTCGGGCGCCTGCTGCGCAGCACCGTCATGGCGGAGGCGACGC
ACCCGCTGCCCGTCATCCGCGCGCAGGAGCTCGACACGTGGTCGCGGTCG
CCGCAGTACCTGGGGGTGCTCAAGCGGGGGGCGGAGCTGGTGGACGCGGG
GCCAGTGGCGCCGCCTCCCCCCGTTGCGCGGTGA
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protein sequence of jgi.p|Trimin1|174954

>Trimin1|174954|e_gw1.119.30.1 ID=Trimin1|174954|e_gw1.119.30.1|Name=jgi.p|Trimin1|174954|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=278bp
QHPFDQEATAALKRLPGLEAAVRSFIPIVEDTIYLDNIANAVLVGPHQLQ
SIHKSLLQACAILDMQPPEVYVRQNPTPNAYTLAVSGKKPFIVLHSSLID
LMSPAELQAVIAHELGHLKCEHGIWITAANVLTSGLARSAFGLGSVVAEA
LGLRRLLQRWRLTAELSCDRAALLVAQDVNVVVSTLLKLVGGSVRNADEL
SVHEFLKQAKAYDLASRTRLGRLLRSTVMAEATHPLPVIRAQELDTWSRS
PQYLGVLKRGAELVDAGPVAPPPPVAR*
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mRNA from alignment at Contig_119:406771..409905+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10665 ID=mRNA_10665|Name=jgi.p|Trimin1|174954|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3135bp|location=Sequence derived from alignment at Contig_119:406771..409905+ (Tribonema minus UTEX_B_3156 )
CAGCATCCCTTTGATCAAGAGGCGACTGCGGCATTGAAGCGGTTACCGGG GCTGGAAGCTGCAGTTAGGAGCTTTATTCCTATTGTTGAGGTACGTGGCC TACCGTCAGCCTTTTGATGTGACTCTGTCCAGACCACGACAAAGAACCAA GTGGCAAGCAGAGGGAGTGTGCTGGGCAAGGTGTAACAGATGGCGTGGGG ATATCTTCATCAAGGTGCACTAGATGTACTTTTCTCTGGCAACCAGCGCC TGCGAACTGCTGTCCTTGAAGTTTGCGCTGCTCAGCTGCCACCTGGCTTG TCGCGAGCACACAGACGGCGCCTGTGCGCAAGGCCCGCAGCTGAAGTGCA TTCTGGTGCATGTGACTGGCGCAGGACACCATATACCTGGACAACATCGC CAACGCTGTGCTGGTGGGGCCTCACCAGCTGCAATCCATCCACAAGTCGC TGCTGCAGGCGTGCGCCATCCTGGACATGCAGGTGCGCTCACAACATGCC ATCATTGTTGGCGTGCACCTTGCCGCATTTCTTTGCTTTGTAAGTGCCGC ATCATTGCCACGCAGAAGGTCATAGTCGTACCAACAAGGGTTTTGTGCTT TCACCAGGTGTCAATGCCCCAACAGCCGTTTGCCATGGCTATCTCTTGGA TGTTGAACGTGCAGGTATGTAGAGGGGGTTGTCGCCGGTACTTTGGCGCT GCTGCCAACGCCCATGCATGTCCACAACCTCGTCCATGGATTCTCATGAT CACGCTTCATGTGCCAACTGCGCGTGCAGCCCCCAGAGGTCTACGTGCGG CAGAACCCGACACCCAACGCCTACACCCTGGCAGTCAGCGGCAAGAAGCC CTTCATCGTACTGCACAGCAGGTGAGTGCGACCGCTGCCTCGGCTCCACG ACACCTGACTCCATCAGATCATCTGGTGCCGTGTAAACGCAATGCTCTGC AGCTACATGTGACGCTGCCGTGCACGTACGCAAGCCTCCATCAGTCACGC ATCGCAGGGGCCCTTCGCAAAGTGTGCCATTCCACTCCCCAGCTGTTGCA AGCCAGCGACGCGGCACCACTCTGTTGAACCCAGCATACAGACACCTCGG TGCATGCATGGACCGTTCCCGGCGCCGTTCCCCAGCGCGCGCTCACGCGC CGCCGCTTGCACCCCCCTCCTCCGCTCGCGCGCGTGCGCTCTCCCACCAG CCTGATCGACCTCATGAGCCCCGCGGAGCTCCAGGCCGTCATCGCGCACG AGCTCGGGCACCTCAAGTGCGAGCACGGCATCTGGATCACTGCGGCGAAC GTGCTGACGAGCGGCCTGGCGCGGTCCGCGTTTGGCCTCGGCAGCGTCGT GGCGGAGGCGCTTGGGCTGCGGCGGCTGCTGCAGCGGTGGCGCCTGACAG CGGAGCTCAGCTGTGACAGGGCGGCGCTGCTCGTGGCGCAGGACGTGAAC GTCGTGGTGTCCACGCTACTCAAGGTGAGTCAGAGTCAGAGTTATTGTCG TGGCGGCAACAGGGCGGTGCTGCTCGTGGCGCAGGACGTGAACGCCGTGG TGTCCACGCTGCTCGAGGTGAGTCGGGTCTAAGTCATTCATCGCGGCAGA GCTCAGCTGCGATGTAGTGGTCTCAGGGTGAATGTGGTAGTGGTGTCAGC GCTGCTGCATGTGACTCAGACTTGGAGTCTCCGCAGGGCATGGGGATGGG AGAACAGCCTGTGAGGACGCGCCACCACGGCAGTCAGCCGTGCAAGGCGT GAAGATGGCGGCGTCCGCGCTACTCGCGGTATCAGTGTGTGAGTTTTGAT GACATGATGTTCGTCTGCGCTACTCGGTTCAGTATGTGAGTGTTGAGGAC ATGATGTTCATGAGCTCTGAGTGCTGGGCAACACTCGCGCCATCTTCGGT GATGCTGAATACCGCAACAGCGGACGCGGTACAGAACGGCGTGCCAAGCA CTTCTAGGCACCTTGTCGGATGGCACTGGATGTGGCAGTGCGGCCAGCAT CGCAAGTGGCATCTGTTGTGTCTAGGACTGAATTGATGTCCGCAGTACCA CTCTGGTACTTGCTCGCTTCCAGCTGCGACAGGTGCGCGCCTCGCTGCCA CTCCGCTCAGCGCAGTGCTGCCGCCGCTGCTGCCGCCGCCGCTGCTGCTG CCACCGTCATCGGCTGCGTAGCTGCAATCCTCGTGCATCAGCAGCTCTGC CCAGAGCAGTTGCTCAACGAGTCCTCTGCGATACTGCGTCATAACCACAG TATGTATTGACCACCCCCTACCCCCCCAAAGCGCACGTGGAGCTTGTATA AGAGTGGTTGCTCTACAATGAACGCTCATAATGTTTGAAATGGCGGTGCT GAGTTGATGTCTGTGACACACACTCTTACACGAGCTCCACGCGCGCTCTG TAGCATTATCGATCTTCCTCTCATAGCCGTTCATTTACTCACACGCGCGG TCTGGCCACAGACATAAAATCAGCACGGCCATTACAAAGTCATGAGCGTT TATCATTGAGCAACCCTCACTGCGAACCATCAGCACCTTTACACCAGCTC CACGCGCGCTTTGTAGGCATCATCAGCCTTCCTGTCAGAGTCGTTCATTT CCTTACACGCGCGGTCTGGGTACTGTGGCACTCTTTGCTTTTATGCATGC ATGTGCTGCTCCCTGTTTTGGGGGGTTGGGGGGCAAGAGCCAGATGCTAC AGAGCCACACACCAACACTTGCACTTGCAGTGCAGCGTCCTTGATAAGCA ACCTTCACTGCGAACCATCAGCACTCCCACACGAGCTCAACGCGCGCTTT GTAGGCATCAACAATCTTCCCTTCACAGCGACCCCCCCCCCCCCCCCCCC CCCCCCCGCGCGCAGCTGGTCGGCGGCAGCGTGCGCAACGCGGACGAGCT GAGCGTGCACGAGTTCCTCAAGCAGGCCAAGGCGTACGACCTCGCCAGCC GCACGCGCCTCGGGCGCCTGCTGCGCAGCACCGTCATGGCGGAGGCGACG CACCCGCTGCCCGTCATCCGCGCGCAGGAGCTCGACACGTGGTCGCGGTC GCCGCAGTACCTGGGGGTGCTCAAGCGGGGGGCGGAGCTGGTGGACGCGG GGCCAGTGGCGCCGCCTCCCCCCGTTGCGCGGTGA
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Coding sequence (CDS) from alignment at Contig_119:406771..409905+

>mRNA_10665 ID=mRNA_10665|Name=jgi.p|Trimin1|174954|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=834bp|location=Sequence derived from alignment at Contig_119:406771..409905+ (Tribonema minus UTEX_B_3156 )
CAGCATCCCTTTGATCAAGAGGCGACTGCGGCATTGAAGCGGTTACCGGG
GCTGGAAGCTGCAGTTAGGAGCTTTATTCCTATTGTTGAGGACACCATAT
ACCTGGACAACATCGCCAACGCTGTGCTGGTGGGGCCTCACCAGCTGCAA
TCCATCCACAAGTCGCTGCTGCAGGCGTGCGCCATCCTGGACATGCAGCC
CCCAGAGGTCTACGTGCGGCAGAACCCGACACCCAACGCCTACACCCTGG
CAGTCAGCGGCAAGAAGCCCTTCATCGTACTGCACAGCAGCCTGATCGAC
CTCATGAGCCCCGCGGAGCTCCAGGCCGTCATCGCGCACGAGCTCGGGCA
CCTCAAGTGCGAGCACGGCATCTGGATCACTGCGGCGAACGTGCTGACGA
GCGGCCTGGCGCGGTCCGCGTTTGGCCTCGGCAGCGTCGTGGCGGAGGCG
CTTGGGCTGCGGCGGCTGCTGCAGCGGTGGCGCCTGACAGCGGAGCTCAG
CTGTGACAGGGCGGCGCTGCTCGTGGCGCAGGACGTGAACGTCGTGGTGT
CCACGCTACTCAAGCTGGTCGGCGGCAGCGTGCGCAACGCGGACGAGCTG
AGCGTGCACGAGTTCCTCAAGCAGGCCAAGGCGTACGACCTCGCCAGCCG
CACGCGCCTCGGGCGCCTGCTGCGCAGCACCGTCATGGCGGAGGCGACGC
ACCCGCTGCCCGTCATCCGCGCGCAGGAGCTCGACACGTGGTCGCGGTCG
CCGCAGTACCTGGGGGTGCTCAAGCGGGGGGCGGAGCTGGTGGACGCGGG
GCCAGTGGCGCCGCCTCCCCCCGTTGCGCGGTGA
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