mRNA_10645 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A835ZCG4_9STRA (EF-hand domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG4_9STRA) HSP 1 Score: 210 bits (535), Expect = 5.590e-69 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 Query: 1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAASV 318 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAASV Sbjct: 1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAASV 106
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: D7G790_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G790_ECTSI) HSP 1 Score: 114 bits (286), Expect = 1.270e-30 Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = 1 Query: 1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAASV 318 +EL TRVMYHRP DPN FLLEVL TL++A+ PT FFT EDI+A F + DPTG+G +S +QYE AL+ +G++ P+V P+ +R+ + F+ C+ +EL A SV Sbjct: 33 KELGTRVMYHRPKDPNKFLLEVLGTLKSAQGQGTPTTFFTDEDIDAMFSLFDPTGRGHISHEQYENALKTLGIDDPSVGAPK--HKRISKDEFRSCISKELLANSV 136
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A7S2S3G4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3G4_9STRA) HSP 1 Score: 101 bits (251), Expect = 3.200e-25 Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAASV 318 QEL TR++Y R DPNAFLLEVL+ ++ S PT FFT+EDI F M DPT KG +SR+QYEQAL ++GVE P V + + ++ R TF RC+ +E+ A S+ Sbjct: 42 QELGTRLVYERREDPNAFLLEVLEEIQKNSASSKPTEFFTSEDIITMFEMFDPTNKGEISREQYEQALASIGVETPKVNVMT--KMKIDRQTFCRCIADEIRALSL 145
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A067CSD2_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CSD2_SAPPC) HSP 1 Score: 86.3 bits (212), Expect = 2.130e-19 Identity = 42/101 (41.58%), Postives = 66/101 (65.35%), Query Frame = 1 Query: 1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEEL 303 QE+CT +MY RP++P F+++ L+ +R AR++ FFT D+ F M D T +G++S QY+QAL N+G+++P + LPE RV ++ F R M +EL Sbjct: 35 QEICTNMMYIRPTNPREFMVQQLNLIRHARENRTAMTFFTETDLATMFSMFDTTSQGTISLVQYDQALLNLGIDRPTLRLPESIN-RVDKTLFVRSMLQEL 134
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A3F2RDY2_9STRA (EF-hand domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RDY2_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 3.030e-17 Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 1 Query: 7 LCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAAS 315 L T ++YHRPS+P FL + L LR A+ P FF D++A F D +G+++ +QY+QALRN+G+EKP + LPE + ++ F R + +E+ AS Sbjct: 39 LGTLLLYHRPSNPREFLAQHLQELRRAKQEQTPMPFFNEHDLKAMFAAFDMKEQGTITLEQYDQALRNLGIEKPTMRLPESVAS-ITQALFIRSVTQEIKNAS 140
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A1V9ZHC5_9STRA (EF-hand domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZHC5_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.100e-17 Identity = 41/97 (42.27%), Postives = 65/97 (67.01%), Query Frame = 1 Query: 1 QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCM 291 QELC+ +MY RP++P F+++ L +R AR++ ++FFT D+ F M D T +GS+S QY+QAL+N+G+++P + LPE RV ++ F R M Sbjct: 418 QELCSLMMYSRPANPREFMIQQLQIIRHARETRSVSSFFTELDLTTMFSMFDTTNQGSISLAQYDQALKNLGIDRPTIRLPESIT-RVDKNLFVRSM 513
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: K3WBI5_GLOUD (EF-hand domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBI5_GLOUD) HSP 1 Score: 74.3 bits (181), Expect = 1.160e-14 Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 1 Query: 13 TRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAAS 315 T +++HRP +P FL + L ++ A+ S V FF D+EA F D T +G ++ +QY+QAL+N+G+++P + LPE + + F R M +E+ AS Sbjct: 44 TLLLFHRPENPRQFLAQHLAEIQRAKQSQVHVPFFEEHDLEAMFAAFDVTDRGYITPEQYDQALKNLGIDQPTLRLPESVS-AINHNLFIRSMTQEIKNAS 143
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A8J2WMQ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WMQ0_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.950e-14 Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 1 Query: 4 ELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELA 306 +L R+M+ RP DPNAFLLE L+ ++ DS V FFT DI A F +DP G+++ +QY AL+++GVE P L EG E V + F M+ ELA Sbjct: 24 DLGARLMFERPKDPNAFLLEELERVQ---DSKV-RGFFTDTDIAACFAALDPHDTGTITAKQYAHALKSMGVEAPKEPLDEGT-EVVAKDDFMERMKRELA 119
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A329T3N0_9STRA (EF-hand domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A329T3N0_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.060e-14 Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 7 LCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAAS 315 L T ++YHRPS+P FL++ LD +R A+ FF D++ F D +G ++ +QY+QAL N+G+EKP + LPE + ++ F R + +E+ AS Sbjct: 39 LGTLLLYHRPSNPREFLIQQLDEMRKAKQEQRHEPFFEENDLKVMFAAFDIKEQGFITTEQYDQALLNLGIEKPTLRLPESVS-TINQALFIRSVTQEIKNAS 140
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Match: A0A225VXB0_9STRA (EF-hand domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VXB0_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.160e-13 Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 7 LCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMMDPTGKGSVSRQQYEQALRNVGVEKPAVALPEGEQERVCRSTFQRCMQEELAAAS 315 L T ++YHRP++P FL + LD +R A+ FF +D++A F D +G ++ QY+QAL N+G+EKP + LPE + ++ F R + +E+ AS Sbjct: 37 LGTLLLYHRPANPREFLAQHLDEMRKAKQEQNHVPFFDEQDLKAMFAAFDIKEQGYITSVQYDQALLNLGIEKPTLRLPESVS-AINQALFIRSVTQEIKNAS 138 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150124 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10645 ID=mRNA_10645|Name=jgi.p|Trimin1|150124|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_119:337206..337523+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGGAGCTTTGCACTAGAGTGATGTATCACAGGCCCAGCGATCCCAACGCback to top protein sequence of jgi.p|Trimin1|150124 >Trimin1|150124|gw1.119.78.1 ID=Trimin1|150124|gw1.119.78.1|Name=jgi.p|Trimin1|150124|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp QELCTRVMYHRPSDPNAFLLEVLDTLRTARDSMVPTAFFTAEDIEATFGMback to top mRNA from alignment at Contig_119:337206..337523+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10645 ID=mRNA_10645|Name=jgi.p|Trimin1|150124|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_119:337206..337523+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_119:337206..337523+ >mRNA_10645 ID=mRNA_10645|Name=jgi.p|Trimin1|150124|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_119:337206..337523+ (Tribonema minus UTEX_B_3156 )back to top |