mRNA_10642 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|11335
Unique NamemRNA_10642
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A836CLV1_9STRA (NADH(P)-binding-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV1_9STRA)

HSP 1 Score: 563 bits (1450), Expect = 3.330e-200
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 1
Query:   58 MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHAL 960
            MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHAL
Sbjct:    1 MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHAL 301          
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: D8LDG8_ECTSI (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG8_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 1.250e-82
Identity = 151/262 (57.63%), Postives = 182/262 (69.47%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAV-----DVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951
            VTVLGA GKTG ECV+ L +KG    A +RS  L ++  +P A  T   +     DVT  SS+   +KGA  VIFA+SASK GG+A+AVDY+GVVN AKACLE  VPRLV+VSSGGV+ P S +YKFLNLFGEIM +K  GE+++R++YA  D  C+YTIVRPGGLTL PP GV  +E+NQGD  SGRIARADVA +CVE+IYS    D T ECY  DT KPL +VGVSNILKQ       +  +   G TW  LF GL+ D
Sbjct:  112 VTVLGAGGKTGRECVEYLASKGTGVRAVARS--LTNKEGEPLAFTTTKGITMETADVTVPSSLPGVIKGASAVIFASSASKQGGSAKAVDYEGVVNVAKACLEAKVPRLVVVSSGGVATPESSIYKFLNLFGEIMSWKIQGEDQLRSMYAAQDV-CHYTIVRPGGLTLDPPRGVGAIELNQGDTKSGRIARADVARVCVESIYSRNAEDCTLECYYKDTAKPLAAVGVSNILKQKTDDTAKSFGTESTGDTWDALFSGLKHD 370          
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S3UTL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTL3_HETAK)

HSP 1 Score: 262 bits (669), Expect = 6.390e-81
Identity = 163/315 (51.75%), Postives = 203/315 (64.44%), Query Frame = 1
Query:   55 YMTASSGSASRREALDSTAAA-ACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSE----------FEDPSALLTAAAVDVTNLSSVSAAVK-GAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCY-YTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSA---HRGSTWAQLFQGLEPD 951
            Y  A+ G   RREAL    +  A   +LS LSP + FA+ G  V VLGA GKTG ECV  LL  G+ C ATSRSG+ + +                 L+ AA +V   ++++  +  G  GVIFAASASK GG A+ VDY+G+V  AKAC+   VPRLV+VSSGGVSKP+S VYKFLNLFGEIMK+K +GE+EV+ALYA +  P   YT+VRPGGLT  P  GV  LE+NQGD  SGRIARADVA I V A+   A ++T FECY ADT KPL++VG SNI+K+       A +S     R  +W  LF+GL+PD
Sbjct:   49 YQMAADGPMDRREALRRVGSTGASLGLLSILSPQSAFASPG-PVVVLGAGGKTGKECVYSLLRNGVPCIATSRSGAPQLDAAAXXXXXXXXXXXXXXLSFAAANVVQETTLTEVITPGIAGVIFAASASKKGGTAKEVDYEGLVKVAKACIAAEVPRLVVVSSGGVSKPDSAVYKFLNLFGEIMKYKVMGEDEVKALYAAAGNPALGYTVVRPGGLTEEPAKGVAALELNQGDTKSGRIARADVAEIAVRALLDPAAKNTVFECYDADTSKPLNAVGASNIMKKKTSTEEAAATSTGLERRADSWGGLFKGLKPD 362          
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S2HEC2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HEC2_9STRA)

HSP 1 Score: 261 bits (668), Expect = 2.080e-80
Identity = 150/266 (56.39%), Postives = 180/266 (67.67%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGS------LKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAP---CYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951
            V ++GANG+TGTECVK L + G+   ATSRSG+      + S     S LL  AA DVT   ++++ ++G+K VIFAASASK GG A AVD  G+VN AKAC+E NVPRLVIVSSGGVSKP+SPVY FLN+FG IM+ K  GE+ VR +Y    +      YT+VRPGGLT  PP GV  +E+NQGD  SGRI+RADVAAICVE + SDA   TTFECY ADT  PL SVG+SNI+K        +     RG TW  LF GLE D
Sbjct:  127 VIIIGANGRTGTECVKYLASSGMPVVATSRSGTYNALEEVSSTLPPSSTLLREAACDVTKPETLTSTIQGSKAVIFAASASKAGGTAAAVDNTGLVNVAKACIECNVPRLVIVSSGGVSKPDSPVYLFLNIFGNIMEEKIRGEDAVREMYKSLPSGKNGLSYTVVRPGGLTTDPPRGVAAVELNQGDTKSGRISRADVAAICVECLSSDAAAGTTFECYDADTAAPLASVGMSNIMKAKTREAFVS-GKERRGETWGALFSGLEKD 391          
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S3Q5A4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5A4_9STRA)

HSP 1 Score: 251 bits (641), Expect = 5.640e-77
Identity = 142/260 (54.62%), Postives = 175/260 (67.31%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEA-IYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSA--HRGSTWAQLFQGLEPD 951
            + V+GANGKTG+ECV   +++GI   ATSR G    E+     L TA   DVT  S+V AA+KG++ VIFAASASK GG A AVD  G+ N A +C+   +P LVIVSSG V+KP+SPVYKFLNLFG IM  K  GE+ VR LY  + +PC YT++RPGGLT     GV  LE+NQGD  SGRI+RADVAA+C+EA ++S  +  TTFECY ADT KPL +VGVSNI+K      +    S    RG TW  +F GLE D
Sbjct:   86 ICVIGANGKTGSECVDACISRGINVRATSRGGVYTGEYSSEQFLSTAPC-DVTISSTVDAAIKGSQAVIFAASASKAGGTAAAVDNIGLTNVASSCIRQGIPHLVIVSSGAVTKPSSPVYKFLNLFGNIMAEKIKGEDTVRELYKDASSPCTYTVIRPGGLTQELARGVSALELNQGDTKSGRISRADVAALCIEATLHSKDSGSTTFECYDADTSKPLGTVGVSNIVKAKNKSDSEVFMSGKERRGETWGDIFVGLEND 344          
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S1CTA4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CTA4_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.600e-74
Identity = 141/266 (53.01%), Postives = 176/266 (66.17%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPS-ALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDA-------PCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAI-YSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951
            + V+G NG+TGTE VK L++K     ATSR+G        P+ A+L     DVTN  SV  A  G   VIFAASASK GG   AVD  G+VN AKAC++ NVP LV+VSSG V+KP+SPVY+FLNLFG+IM+ K  GE+ VR LYA+ +A          YTI+RPGGLTL PP GV  +E+NQGD  SGR+ARADVA +CVE++ Y   T +TTFECY ADTG PL +VG+SNI K+             RG+T+ +LF GL+ D
Sbjct:   95 ICVIGCNGRTGTEVVKYLISKNEPIKATSRTGEYNDAASVPAGAMLEQLVCDVTNPKSVQLACAGTSAVIFAASASKSGGTPSAVDNAGLVNVAKACMDANVPHLVVVSSGAVTKPSSPVYQFLNLFGKIMEEKVKGEDAVRKLYAEHNANLREGGQKLTYTIIRPGGLTLDPPRGVAAIELNQGDTKSGRLARADVAQLCVESLNYPQLTGETTFECYDADTGAPLATVGLSNIAKKKTDGEVFVSGFERRGNTYEELFTGLQKD 360          
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: B7G342_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G342_PHATC)

HSP 1 Score: 244 bits (624), Expect = 3.690e-74
Identity = 136/260 (52.31%), Postives = 176/260 (67.69%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQS--DAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAI-YSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951
            + V+GANG+TG++CV+  + +GI   ATSRSG+   +    S L+     DVT  +++S A++  + VIF ASASK GG    VD  G+VN A+ACL   +P LV+VSSG V+KPNSPV++FLNLFG+IM+ K  GE+EVR LY+ S       YT++RPGGLT   P GV  LE+NQGD  SGRIARADVAA+C+EA  Y   T   TFECY +DTGKPL +VG+SNILKQ A P      + H G T+ +LF GL+ D
Sbjct:  109 ICVIGANGRTGSQCVQACVERGIPVRATSRSGTYNGD--SSSKLVALLPCDVTKPATISRAIERCQAVIFCASASKNGGTPSQVDNDGLVNVARACLAQKIPHLVVVSSGAVTKPNSPVFQFLNLFGKIMEEKIKGEDEVRRLYSMSGNQPSLVYTVIRPGGLTEDAPRGVTALELNQGDTKSGRIARADVAALCIEATRYPGLTGFATFECYDSDTGKPLSTVGISNILKQKAAPADFTSGTEHVGETFEKLFTGLQRD 366          
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S0HMC0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HMC0_9CRYP)

HSP 1 Score: 233 bits (594), Expect = 1.360e-69
Identity = 137/273 (50.18%), Postives = 183/273 (67.03%), Query Frame = 1
Query:  172 GGAVTVLGANGKTGTECVKQLLAKGIACTATSRS--GSLKSEF--EDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALY--AQSDAPCY---YTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSA----HRGSTWAQLFQGLEPD 951
            GG+V V+GA G TG ECV  L+ +GI   A  R+   S   +F  E  S+L++    D+T   ++   +KG K +IFAASASK GG+ + VDY+G++N A+ C++ N+ RLV+VSSG VS+P+S VYKFLNLFG IM +K  GE E++++Y  A++  P +   YTIVRPGGLT  P LGV  +E+NQGD  SGRIARADVA ICVE+I+S    DTTFECY  DT KPL+ VG+SN+ K+     T A S+      +G +W +LF GLE D
Sbjct:  101 GGSVAVVGAGGGTGKECVDALIRRGIPVRAIIRAKTNSKGKDFVLEGDSSLVSEIVGDITAPDTLRDPLKGCKALIFAASASKKGGDPQKVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFGSIMYWKIQGENEMKSMYKAAKAKNPSFSGSYTIVRPGGLTEGPSLGVSSIELNQGDTKSGRIARADVAEICVESIFSKDAADTTFECYYKDTAKPLEGVGLSNLFKKKTSD-TEAQSNLTGKERQGDSWPKLFSGLEKD 372          
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: L1IPP0_GUITC (NAD(P)-bd_dom domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IPP0_GUITC)

HSP 1 Score: 228 bits (581), Expect = 1.460e-68
Identity = 134/273 (49.08%), Postives = 181/273 (66.30%), Query Frame = 1
Query:  172 GGAVTVLGANGKTGTECVKQLLAKGIACTATSRS--GSLKSEF--EDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALY--AQSDAP---CYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPS----SAHRGSTWAQLFQGLEPD 951
            GG++ V+GA+G TG ECV  L+ +GI   A  R+   S   +F  E  S+L++    D+T+  ++  ++KG K +IFAASASK GG+ + VDY+G++N A+ C++ N+ RLV+VSSG VS+P+S VYKFLNLFG IM +K  GE E++ +Y  A+   P   C YTIVRPGGLT    LGV  +E+NQGD  SGRIARADVA ICVE+I+S    DTTFECY  DT KPL+ VG+SN+ K+     T A S       +  +W +LF GL+ D
Sbjct:   30 GGSIAVVGASGGTGKECVNALVRRGIPVRAIIRAKTNSKGKDFVLEGDSSLVSEVIGDITSPDTLRDSLKGCKALIFAASASKKGGDPKQVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFGSIMYWKIQGENEMKGMYKSAREKNPSFACSYTIVRPGGLTEGAALGVSSVELNQGDTKSGRIARADVAEICVESIFSKDAADTTFECYYKDTAKPLEGVGLSNLFKKKTSD-TEAQSIMTGKERQADSWPKLFAGLDKD 301          
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S2PD41_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PD41_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.090e-67
Identity = 140/271 (51.66%), Postives = 173/271 (63.84%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEF---EDPSALLTAAAVDVTNLSSV-------SAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGE-IMKFKALGEEEVRALYAQSDAPCY---YTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951
            V VLGANG TG ECV  LL KG +C ATSRSG LK +    E+     +A AVDVT++ S+       +        VIFAASAS  GG+A+AVD +GV+NAA+ C+ NN+PRLVIVSSG V++P+S VYK LN  G+ IM+ K  GE+ VR +YA  +       YTIVRPGGLT    LG   LE+NQGD  SGR++RADVA ICV  + S  T D TFECY A+T KP++SVG+SNI+K T    T        G TW +LF GL  D
Sbjct:   31 VLVLGANGGTGNECVAALLKKGRSCIATSRSGELKYQDMYRENELFSSSANAVDVTSIESLEDVLLEKATPTNNIGAVIFAASASTKGGDADAVDRQGVINAAQCCIANNIPRLVIVSSGTVTRPDSAVYKLLNFVGKGIMEAKISGEDAVRDMYANPEIKAKGLGYTIVRPGGLTTGTSLGASALELNQGDNKSGRLSRADVAEICVNCLDSPYTFDVTFECYEANTAKPVESVGISNIMKSTDAT-TFVSGREQLGETWEELFNGLSCD 300          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLV1_9STRA3.330e-200100.00NADH(P)-binding-domain-containing protein n=2 Tax=... [more]
D8LDG8_ECTSI1.250e-8257.63NAD(P)-bd_dom domain-containing protein n=1 Tax=Ec... [more]
A0A7S3UTL3_HETAK6.390e-8151.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2HEC2_9STRA2.080e-8056.39Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3Q5A4_9STRA5.640e-7754.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1CTA4_9STRA1.600e-7453.01Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B7G342_PHATC3.690e-7452.31Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S0HMC0_9CRYP1.360e-6950.18Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1IPP0_GUITC1.460e-6849.08NAD(P)-bd_dom domain-containing protein n=2 Tax=Gu... [more]
A0A7S2PD41_9STRA1.090e-6751.66Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_119contigContig_119:324277..328243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|11335|CE11334_111
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
COG categoryGM
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Evalue4.03e-85
Seed ortholog2880.D8LDG8
Hectar predicted targeting categorysignal peptide
TranscriptId11657
TrackFilteredModels1
ProteinId11335
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|11335gene_10642Tribonema minus UTEX_B_3156 geneContig_119 324277..328243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|11335Trimin1|11335|CE11334_111Tribonema minus UTEX_B_3156 polypeptideContig_119 324541..328186 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10642_5exon_10642_5Tribonema minus UTEX_B_3156 exonContig_119 324277..324727 -
exon_10642_4exon_10642_4Tribonema minus UTEX_B_3156 exonContig_119 325350..325595 -
exon_10642_3exon_10642_3Tribonema minus UTEX_B_3156 exonContig_119 326314..326355 -
exon_10642_2exon_10642_2Tribonema minus UTEX_B_3156 exonContig_119 327371..327647 -
exon_10642_1exon_10642_1Tribonema minus UTEX_B_3156 exonContig_119 328033..328243 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10642UTR3_10642Tribonema minus UTEX_B_3156 three_prime_UTRContig_119 324277..324540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10642CDS_10642Tribonema minus UTEX_B_3156 CDSContig_119 328033..328186 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10642UTR5_10642Tribonema minus UTEX_B_3156 five_prime_UTRContig_119 328187..328243 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10642 ID=mRNA_10642|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1227bp|location=Sequence derived from alignment at Contig_119:324277..328243- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCACCTTGCATGGAGCTTCAGCGCGCATCAGCAGAAGATGCTTGGATCC
GCTCTACATGACAGCAAGTTCCGGCTCTGCGTCCCGGCGGGAAGCTCTCG
ACTCTACCGCAGCCGCGGCTTGTGCTGCTGTGCTGTCGTTTCTGTCCCCT
GGCACGGTATTCGCCGCAGCAGGGGGCGCTGTGACGGTGCTTGGAGCCAA
TGGGAAGACAGGCACGGAGTGCGTGAAGCAGCTGCTGGCGAAGGGCATTG
CATGCACCGCAACCTCACGGTCAGGCTCTCTCAAAAGCGAGTTTGAGGAC
CCAAGTGCGCTGCTCACTGCTGCGGCCGTGGATGTCACCAATCTCAGCTC
CGTGAGCGCAGCTGTGAAGGGGGCAAAGGGGGTAATATTTGCCGCCAGCG
CTAGCAAGGGCGGCGGGAATGCGGAGGCGGTGGACTACAAGGGCGTTGTA
AATGCGGCCAAGGCGTGCCTGGAGAACAACGTACCCAGGCTGGTAATTGT
GAGCTCTGGCGGCGTCAGCAAGCCAAACAGCCCCGTGTACAAGTTCCTCA
ATCTCTTTGGCGAGATCATGAAGTTCAAGGCGCTCGGCGAGGAGGAAGTG
CGCGCGCTGTACGCGCAGTCCGATGCGCCCTGCTACTACACCATCGTGCG
CCCGGGGGGGCTGACGCTGGCCCCCCCCCTCGGCGTCGAGCAGCTCGAGA
TCAACCAGGGGGATGCCATCAGTGGCCGCATTGCGCGCGCCGACGTCGCC
GCCATTTGCGTGGAGGCCATCTACAGCGACGCCACCCGGGACACGACGTT
TGAATGCTACGGTGCGGACACCGGCAAGCCGCTGGACTCTGTGGGCGTAA
GCAACATATTGAAGCAGACCGCGGGGCCTGGCACGCCGGCGCCAAGCAGC
GCACACAGGGGGAGCACCTGGGCGCAGTTGTTCCAGGGCCTTGAGCCCGA
TCATGCCTTGTGACAGCAAGGGTGTAGGGGACGATGGCTTGAAGTAGCCG
GTATCGCTTTGAAGTGGTCGCAATGGAGAGAACACAGCACTTTGTAGGGG
CGCATTGATGGCTGACGTGCAGAGGCTAGAATATGAGGACAGTGGTATGG
GTTGTTGTTGCAGTAAGCAGTAAATTATGACTAGGTGCCCATGCCCCGAT
ACCTGCTGTGACGGAGCCGCTTACCATCGCTTTGACATGCTACTGTGCTA
TGTTTGACTGTTTTGGAAACAAGTTAG
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protein sequence of jgi.p|Trimin1|11335

>Trimin1|11335|CE11334_111 ID=Trimin1|11335|CE11334_111|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=302bp
MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGK
TGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVS
AAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSS
GGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPG
GLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFEC
YGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHA
L*
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mRNA from alignment at Contig_119:324277..328243-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10642 ID=mRNA_10642|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3967bp|location=Sequence derived from alignment at Contig_119:324277..328243- (Tribonema minus UTEX_B_3156 )
AGCACCTTGCATGGAGCTTCAGCGCGCATCAGCAGAAGATGCTTGGATCC GCTCTACATGACAGCAAGTTCCGGCTCTGCGTCCCGGCGGGAAGCTCTCG ACTCTACCGCAGCCGCGGCTTGTGCTGCTGTGCTGTCGTTTCTGTCCCCT GGCACGGTATTCGCCGCAGCAGGGGGCGCTGTGACGGTGCTTGGAGCCAA TGGGAAGACAGGTGTGTGGGTTTGGATCTTTTGACATGATGTGTCAGATT CGAACATGGGGCAGATGGCAGCACGTGTAATTATGAAGACTTTGGCATTG CAATGGCTGTGCAGCTGCCTTTGAGCCAGTGTGTTGATGGCCTGATCATT TGGAGCGTACATGTGCCATTTATTTACAACACAGAACGTGCATCACATGG CGATGGCCTCAGCTGGCGCTCACTGTGCTGTTTTGACTCTGCCGGATGTG CTACAACAGAGCGCCGAGCGTGCTGGTCAGATCTCACACTTGTCATTACA GTCAGCACCTGTGAACAACGTCTAGCGCCGCTTCACCTTCACAAGTCAGC ATGCACTTGACAACAGGGAGAGCTAATGACCGTTTGTGCCCTACAGGCAC GGAGTGCGTGAAGCAGCTGCTGGCGAAGGGCATTGCATGCACCGCAACCT CACGGTCAGGCTCTCTCAAAAGCGAGTTTGAGGACCCAAGTGCGCTGCTC ACTGCTGCGGCCGTGGATGTCACCAATCTCAGCTCCGTGAGCGCAGCTGT GAAGGGGGCAAAGGGGGTAATATTTGCCGCCAGCGCTAGCAAGGGCGGCG GGAATGCGGAGGCGGTGGACTACAAGGGCGTTGTAAATGCGGCCAAGGCG TGCCTGGAGAACAACGTACCCAGGTGTGTATGTGTGTACAGCACCTGACG CTGTTGATGTGCTGTCAATGTTGTTGCAAGAACAAGTGTTGAAGTAGGAT GGGCAGAATTGTCGGATGCGTCACACTCTTATCTAGAACACCGCTGGCTC GGTTGCTGTGCGGTGAAGTGGCTACTGTATTGTGTGCCTGGAGAGCAACG CGCCCACGTGTGTGTGCGCACTGACAGTGCTGGTGTGCTGTCAGTGCTAT CATAGAAAGAAGTTGCATTGGTGTGTGCGGAGCAGAGTACGTAGTTGGCA GGCGCCACAGCTGGCATGCTCCACCTAGCTGGCATGCACCATATATGCGG AATAAAGCAGTGTACCAAGGCGTACGCGGGTCGTGCGTTGCTGGTAAGCT GTGGATGCCGTTATTACCAAGGAGCCTTTGGAGTATGAGATGGGAAACTA GTTGAAATGCATCATGTTCACTCAGAGACCGTTAGGTTGGTCACTGCCGC GGAGCACAGTGGCTGGAATCATAGGTGTGAAATCACCTATCTTAGTGAAT GCAGCTGCATCTGCCTGCCTGGCGTCGTGCATGCCACCCTGTTACATCTA TAACTGGGTACGCGGGATGTGTCAAGACGCACCCAGTGTGAACACCTGCA AGCGGTGTGCTGTGCATGTGAACATATACTGCTGAAAGATTGTACCACAA ACTGCTGGAAGTTTGCACCATCACTGACAATGGTGCGTGCCGGTCGCCTT CTTCACAACACCTGCACCACATGGCCTGCTTGTCAACAGCAGCTGCGCAC TTCGTGTTCATCGATGCCGCGGATGACTGCTGCTGCACATTCCGGTGCTT CCGAGTGCGCTTAAAGGTCTGCGGCGCTTGCGCCATTGGTGTGCCCTTTG CCGGCATAGCGCGCGTATCAACGCCAACACAGACCTCTCCCCATGCACAC ACACACTACATACACGCGTGCAGGCGTCTCTCCTGCAGTGCCACAGAGAG CTGATCGCAGGTCTGCTGCCACCCTTCTGCCCCCGCAGGCTGGTAATTGT GAGCTCTGGCGGCGTCAGCAAGCCAAACAGGTGGGGGCGCGTATTGGCGC TCTATATGCATCGTCCCCTGCCACCACTCGCGCGAACATTGCCTGCCGAC AGTAGTGCCGGCGGCTGCGCAATATGGGCGGCTGCTGACCACTGCTGGGC GAGGTCAATCGCTGCCTCACTCATAGGCTGCACGCCGACTTGTCGCGAAC GTAGCACCCTGATCACGCGTCTGACGGGACAGAAACTGCCAGAACTTGCA AGAAGTTTCCGAGAGCAACAGCAACTTGGTTTAAACTGGCGCTTCCAAGA GCGCCCGGCACAGGATCATGAGCCCTTCTGAAAGTAATGGCCAGGGCTTC TGCCGCGCACGCGGTGCCCGGCGACTACTGTGGAATTCTCTAGCAGGCTC AAGTGCGGGTCTTGTGTGCTGATAACCGAGGGCAAACCTATTGGACGCCA CGTGCAAAGCACTTTGATACCTGTGCCTGCAACTCTGATCAGGACGATGA GAGCATGCACGACCTCCAACATTGTATCGCGCCATGTTGACTGAGGCTGC AACTGGCACCGCCTCCGCCGTGACGCCAGAACTCCCTCCACACGTGTGAC TCTGCAAGCAAGTGCGCGCGAACCGTGGCGTTGCAACACGAGCAGTGCAG CCACACGATAGCCTGAGCATCAACCGCCACATGGCCCCAGCACCCCTCAT ATTCCCCCCCCCCCCCCCCCCCTTGCATCCGCCGCCTGTCGCCTGCAGCC CCGTGTACAAGTTCCTCAATCTCTTTGGCGAGATCATGAAGTTCAAGGCG CTCGGCGAGGAGGAAGTGCGCGCGCTGTACGCGCAGTCCGATGCGCCCTG CTACTACACCATCGTGCGCCCGGGGGGGCTGACGCTGGCCCCCCCCCTCG GCGTCGAGCAGCTCGAGATCAACCAGGGGGATGCCATCAGTGGCCGCATT GCGCGCGCCGACGTCGCCGCCATTTGCGTGGAGGCCATCTACAGGTGGGC GAAGTAGGCGCCACCCCTGAACCATAAGCCAGGGTTACTGTCATAAGTCT TTGCACATGGCAGCGAGCTGAGTGGCGCGTAGAGTGCGCATGTCACGTTG CGAGTGTGCCATCACTATCGCTGCACGTGCAGTGCACAGCGGCGTTCACC CCAGATTGACCGGTAGCTGCCGCGCATGCAATTCAACGTGGCTGGGGGCG ACTGCGCCTTCAGCAACAAGCAGTCCAAGCCTTCGCTTCACCATGCATTT GTGGCAGACGTCCTTTGTAAGTGGTGGGCCTGCCCTCCATGTTTGGGCCT GCCGCAGCTTGTTGGGACACCCCCCCCAGCAGCCCGTGTAGCATGCGCAT GCGCTGGGCTTACTTCCATGAGCGCCGAGCCTACTGCCGCCGGGTCTGGC GCCATGCACACCATTCATTCGCAGCTCGCAGGCCGGGAGGCGTGGCGGAG CTCTTTCACCTTCAAACAGACATAGATGTCATAATGCTATGGCGCTGCAT AGCATGCTTCAGCATACGCCATTATAAGCCCCTGACATGTGCTCATCAGG CATGCCCCCTAACCCACAACTTGTGAACGTCGGCACTCTGCGTCTGTCCG TTGCTCGCTGCCGCAGCGACGCCACCCGGGACACGACGTTTGAATGCTAC GGTGCGGACACCGGCAAGCCGCTGGACTCTGTGGGCGTAAGCAACATATT GAAGCAGACCGCGGGGCCTGGCACGCCGGCGCCAAGCAGCGCACACAGGG GGAGCACCTGGGCGCAGTTGTTCCAGGGCCTTGAGCCCGATCATGCCTTG TGACAGCAAGGGTGTAGGGGACGATGGCTTGAAGTAGCCGGTATCGCTTT GAAGTGGTCGCAATGGAGAGAACACAGCACTTTGTAGGGGCGCATTGATG GCTGACGTGCAGAGGCTAGAATATGAGGACAGTGGTATGGGTTGTTGTTG CAGTAAGCAGTAAATTATGACTAGGTGCCCATGCCCCGATACCTGCTGTG ACGGAGCCGCTTACCATCGCTTTGACATGCTACTGTGCTATGTTTGACTG TTTTGGAAACAAGTTAG
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Coding sequence (CDS) from alignment at Contig_119:324277..328243-

>mRNA_10642 ID=mRNA_10642|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=906bp|location=Sequence derived from alignment at Contig_119:324277..328243- (Tribonema minus UTEX_B_3156 )
ATGACAGCAAGTTCCGGCTCTGCGTCCCGGCGGGAAGCTCTCGACTCTAC
CGCAGCCGCGGCTTGTGCTGCTGTGCTGTCGTTTCTGTCCCCTGGCACGG
TATTCGCCGCAGCAGGGGGCGCTGTGACGGTGCTTGGAGCCAATGGGAAG
ACAGGCACGGAGTGCGTGAAGCAGCTGCTGGCGAAGGGCATTGCATGCAC
CGCAACCTCACGGTCAGGCTCTCTCAAAAGCGAGTTTGAGGACCCAAGTG
CGCTGCTCACTGCTGCGGCCGTGGATGTCACCAATCTCAGCTCCGTGAGC
GCAGCTGTGAAGGGGGCAAAGGGGGTAATATTTGCCGCCAGCGCTAGCAA
GGGCGGCGGGAATGCGGAGGCGGTGGACTACAAGGGCGTTGTAAATGCGG
CCAAGGCGTGCCTGGAGAACAACGTACCCAGGCTGGTAATTGTGAGCTCT
GGCGGCGTCAGCAAGCCAAACAGCCCCGTGTACAAGTTCCTCAATCTCTT
TGGCGAGATCATGAAGTTCAAGGCGCTCGGCGAGGAGGAAGTGCGCGCGC
TGTACGCGCAGTCCGATGCGCCCTGCTACTACACCATCGTGCGCCCGGGG
GGGCTGACGCTGGCCCCCCCCCTCGGCGTCGAGCAGCTCGAGATCAACCA
GGGGGATGCCATCAGTGGCCGCATTGCGCGCGCCGACGTCGCCGCCATTT
GCGTGGAGGCCATCTACAGCGACGCCACCCGGGACACGACGTTTGAATGC
TACGGTGCGGACACCGGCAAGCCGCTGGACTCTGTGGGCGTAAGCAACAT
ATTGAAGCAGACCGCGGGGCCTGGCACGCCGGCGCCAAGCAGCGCACACA
GGGGGAGCACCTGGGCGCAGTTGTTCCAGGGCCTTGAGCCCGATCATGCC
TTGTGA
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