mRNA_10642 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A836CLV1_9STRA (NADH(P)-binding-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV1_9STRA) HSP 1 Score: 563 bits (1450), Expect = 3.330e-200 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 1 Query: 58 MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHAL 960 MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHAL Sbjct: 1 MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHAL 301
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: D8LDG8_ECTSI (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG8_ECTSI) HSP 1 Score: 266 bits (681), Expect = 1.250e-82 Identity = 151/262 (57.63%), Postives = 182/262 (69.47%), Query Frame = 1 Query: 181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAV-----DVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951 VTVLGA GKTG ECV+ L +KG A +RS L ++ +P A T + DVT SS+ +KGA VIFA+SASK GG+A+AVDY+GVVN AKACLE VPRLV+VSSGGV+ P S +YKFLNLFGEIM +K GE+++R++YA D C+YTIVRPGGLTL PP GV +E+NQGD SGRIARADVA +CVE+IYS D T ECY DT KPL +VGVSNILKQ + + G TW LF GL+ D Sbjct: 112 VTVLGAGGKTGRECVEYLASKGTGVRAVARS--LTNKEGEPLAFTTTKGITMETADVTVPSSLPGVIKGASAVIFASSASKQGGSAKAVDYEGVVNVAKACLEAKVPRLVVVSSGGVATPESSIYKFLNLFGEIMSWKIQGEDQLRSMYAAQDV-CHYTIVRPGGLTLDPPRGVGAIELNQGDTKSGRIARADVARVCVESIYSRNAEDCTLECYYKDTAKPLAAVGVSNILKQKTDDTAKSFGTESTGDTWDALFSGLKHD 370
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S3UTL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTL3_HETAK) HSP 1 Score: 262 bits (669), Expect = 6.390e-81 Identity = 163/315 (51.75%), Postives = 203/315 (64.44%), Query Frame = 1 Query: 55 YMTASSGSASRREALDSTAAA-ACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSE----------FEDPSALLTAAAVDVTNLSSVSAAVK-GAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCY-YTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSA---HRGSTWAQLFQGLEPD 951 Y A+ G RREAL + A +LS LSP + FA+ G V VLGA GKTG ECV LL G+ C ATSRSG+ + + L+ AA +V ++++ + G GVIFAASASK GG A+ VDY+G+V AKAC+ VPRLV+VSSGGVSKP+S VYKFLNLFGEIMK+K +GE+EV+ALYA + P YT+VRPGGLT P GV LE+NQGD SGRIARADVA I V A+ A ++T FECY ADT KPL++VG SNI+K+ A +S R +W LF+GL+PD Sbjct: 49 YQMAADGPMDRREALRRVGSTGASLGLLSILSPQSAFASPG-PVVVLGAGGKTGKECVYSLLRNGVPCIATSRSGAPQLDAAAXXXXXXXXXXXXXXLSFAAANVVQETTLTEVITPGIAGVIFAASASKKGGTAKEVDYEGLVKVAKACIAAEVPRLVVVSSGGVSKPDSAVYKFLNLFGEIMKYKVMGEDEVKALYAAAGNPALGYTVVRPGGLTEEPAKGVAALELNQGDTKSGRIARADVAEIAVRALLDPAAKNTVFECYDADTSKPLNAVGASNIMKKKTSTEEAAATSTGLERRADSWGGLFKGLKPD 362
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S2HEC2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HEC2_9STRA) HSP 1 Score: 261 bits (668), Expect = 2.080e-80 Identity = 150/266 (56.39%), Postives = 180/266 (67.67%), Query Frame = 1 Query: 181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGS------LKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAP---CYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951 V ++GANG+TGTECVK L + G+ ATSRSG+ + S S LL AA DVT ++++ ++G+K VIFAASASK GG A AVD G+VN AKAC+E NVPRLVIVSSGGVSKP+SPVY FLN+FG IM+ K GE+ VR +Y + YT+VRPGGLT PP GV +E+NQGD SGRI+RADVAAICVE + SDA TTFECY ADT PL SVG+SNI+K + RG TW LF GLE D Sbjct: 127 VIIIGANGRTGTECVKYLASSGMPVVATSRSGTYNALEEVSSTLPPSSTLLREAACDVTKPETLTSTIQGSKAVIFAASASKAGGTAAAVDNTGLVNVAKACIECNVPRLVIVSSGGVSKPDSPVYLFLNIFGNIMEEKIRGEDAVREMYKSLPSGKNGLSYTVVRPGGLTTDPPRGVAAVELNQGDTKSGRISRADVAAICVECLSSDAAAGTTFECYDADTAAPLASVGMSNIMKAKTREAFVS-GKERRGETWGALFSGLEKD 391
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S3Q5A4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5A4_9STRA) HSP 1 Score: 251 bits (641), Expect = 5.640e-77 Identity = 142/260 (54.62%), Postives = 175/260 (67.31%), Query Frame = 1 Query: 181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEA-IYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSA--HRGSTWAQLFQGLEPD 951 + V+GANGKTG+ECV +++GI ATSR G E+ L TA DVT S+V AA+KG++ VIFAASASK GG A AVD G+ N A +C+ +P LVIVSSG V+KP+SPVYKFLNLFG IM K GE+ VR LY + +PC YT++RPGGLT GV LE+NQGD SGRI+RADVAA+C+EA ++S + TTFECY ADT KPL +VGVSNI+K + S RG TW +F GLE D Sbjct: 86 ICVIGANGKTGSECVDACISRGINVRATSRGGVYTGEYSSEQFLSTAPC-DVTISSTVDAAIKGSQAVIFAASASKAGGTAAAVDNIGLTNVASSCIRQGIPHLVIVSSGAVTKPSSPVYKFLNLFGNIMAEKIKGEDTVRELYKDASSPCTYTVIRPGGLTQELARGVSALELNQGDTKSGRISRADVAALCIEATLHSKDSGSTTFECYDADTSKPLGTVGVSNIVKAKNKSDSEVFMSGKERRGETWGDIFVGLEND 344
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S1CTA4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CTA4_9STRA) HSP 1 Score: 245 bits (626), Expect = 1.600e-74 Identity = 141/266 (53.01%), Postives = 176/266 (66.17%), Query Frame = 1 Query: 181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPS-ALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDA-------PCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAI-YSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951 + V+G NG+TGTE VK L++K ATSR+G P+ A+L DVTN SV A G VIFAASASK GG AVD G+VN AKAC++ NVP LV+VSSG V+KP+SPVY+FLNLFG+IM+ K GE+ VR LYA+ +A YTI+RPGGLTL PP GV +E+NQGD SGR+ARADVA +CVE++ Y T +TTFECY ADTG PL +VG+SNI K+ RG+T+ +LF GL+ D Sbjct: 95 ICVIGCNGRTGTEVVKYLISKNEPIKATSRTGEYNDAASVPAGAMLEQLVCDVTNPKSVQLACAGTSAVIFAASASKSGGTPSAVDNAGLVNVAKACMDANVPHLVVVSSGAVTKPSSPVYQFLNLFGKIMEEKVKGEDAVRKLYAEHNANLREGGQKLTYTIIRPGGLTLDPPRGVAAIELNQGDTKSGRLARADVAQLCVESLNYPQLTGETTFECYDADTGAPLATVGLSNIAKKKTDGEVFVSGFERRGNTYEELFTGLQKD 360
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: B7G342_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G342_PHATC) HSP 1 Score: 244 bits (624), Expect = 3.690e-74 Identity = 136/260 (52.31%), Postives = 176/260 (67.69%), Query Frame = 1 Query: 181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQS--DAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAI-YSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951 + V+GANG+TG++CV+ + +GI ATSRSG+ + S L+ DVT +++S A++ + VIF ASASK GG VD G+VN A+ACL +P LV+VSSG V+KPNSPV++FLNLFG+IM+ K GE+EVR LY+ S YT++RPGGLT P GV LE+NQGD SGRIARADVAA+C+EA Y T TFECY +DTGKPL +VG+SNILKQ A P + H G T+ +LF GL+ D Sbjct: 109 ICVIGANGRTGSQCVQACVERGIPVRATSRSGTYNGD--SSSKLVALLPCDVTKPATISRAIERCQAVIFCASASKNGGTPSQVDNDGLVNVARACLAQKIPHLVVVSSGAVTKPNSPVFQFLNLFGKIMEEKIKGEDEVRRLYSMSGNQPSLVYTVIRPGGLTEDAPRGVTALELNQGDTKSGRIARADVAALCIEATRYPGLTGFATFECYDSDTGKPLSTVGISNILKQKAAPADFTSGTEHVGETFEKLFTGLQRD 366
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S0HMC0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HMC0_9CRYP) HSP 1 Score: 233 bits (594), Expect = 1.360e-69 Identity = 137/273 (50.18%), Postives = 183/273 (67.03%), Query Frame = 1 Query: 172 GGAVTVLGANGKTGTECVKQLLAKGIACTATSRS--GSLKSEF--EDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALY--AQSDAPCY---YTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSA----HRGSTWAQLFQGLEPD 951 GG+V V+GA G TG ECV L+ +GI A R+ S +F E S+L++ D+T ++ +KG K +IFAASASK GG+ + VDY+G++N A+ C++ N+ RLV+VSSG VS+P+S VYKFLNLFG IM +K GE E++++Y A++ P + YTIVRPGGLT P LGV +E+NQGD SGRIARADVA ICVE+I+S DTTFECY DT KPL+ VG+SN+ K+ T A S+ +G +W +LF GLE D Sbjct: 101 GGSVAVVGAGGGTGKECVDALIRRGIPVRAIIRAKTNSKGKDFVLEGDSSLVSEIVGDITAPDTLRDPLKGCKALIFAASASKKGGDPQKVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFGSIMYWKIQGENEMKSMYKAAKAKNPSFSGSYTIVRPGGLTEGPSLGVSSIELNQGDTKSGRIARADVAEICVESIFSKDAADTTFECYYKDTAKPLEGVGLSNLFKKKTSD-TEAQSNLTGKERQGDSWPKLFSGLEKD 372
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: L1IPP0_GUITC (NAD(P)-bd_dom domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IPP0_GUITC) HSP 1 Score: 228 bits (581), Expect = 1.460e-68 Identity = 134/273 (49.08%), Postives = 181/273 (66.30%), Query Frame = 1 Query: 172 GGAVTVLGANGKTGTECVKQLLAKGIACTATSRS--GSLKSEF--EDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALY--AQSDAP---CYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPS----SAHRGSTWAQLFQGLEPD 951 GG++ V+GA+G TG ECV L+ +GI A R+ S +F E S+L++ D+T+ ++ ++KG K +IFAASASK GG+ + VDY+G++N A+ C++ N+ RLV+VSSG VS+P+S VYKFLNLFG IM +K GE E++ +Y A+ P C YTIVRPGGLT LGV +E+NQGD SGRIARADVA ICVE+I+S DTTFECY DT KPL+ VG+SN+ K+ T A S + +W +LF GL+ D Sbjct: 30 GGSIAVVGASGGTGKECVNALVRRGIPVRAIIRAKTNSKGKDFVLEGDSSLVSEVIGDITSPDTLRDSLKGCKALIFAASASKKGGDPKQVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFGSIMYWKIQGENEMKGMYKSAREKNPSFACSYTIVRPGGLTEGAALGVSSVELNQGDTKSGRIARADVAEICVESIFSKDAADTTFECYYKDTAKPLEGVGLSNLFKKKTSD-TEAQSIMTGKERQADSWPKLFAGLDKD 301
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Match: A0A7S2PD41_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PD41_9STRA) HSP 1 Score: 226 bits (575), Expect = 1.090e-67 Identity = 140/271 (51.66%), Postives = 173/271 (63.84%), Query Frame = 1 Query: 181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEF---EDPSALLTAAAVDVTNLSSV-------SAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGE-IMKFKALGEEEVRALYAQSDAPCY---YTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951 V VLGANG TG ECV LL KG +C ATSRSG LK + E+ +A AVDVT++ S+ + VIFAASAS GG+A+AVD +GV+NAA+ C+ NN+PRLVIVSSG V++P+S VYK LN G+ IM+ K GE+ VR +YA + YTIVRPGGLT LG LE+NQGD SGR++RADVA ICV + S T D TFECY A+T KP++SVG+SNI+K T T G TW +LF GL D Sbjct: 31 VLVLGANGGTGNECVAALLKKGRSCIATSRSGELKYQDMYRENELFSSSANAVDVTSIESLEDVLLEKATPTNNIGAVIFAASASTKGGDADAVDRQGVINAAQCCIANNIPRLVIVSSGTVTRPDSAVYKLLNFVGKGIMEAKISGEDAVRDMYANPEIKAKGLGYTIVRPGGLTTGTSLGASALELNQGDNKSGRLSRADVAEICVNCLDSPYTFDVTFECYEANTAKPVESVGISNIMKSTDAT-TFVSGREQLGETWEELFNGLSCD 300 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|11335 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10642 ID=mRNA_10642|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1227bp|location=Sequence derived from alignment at Contig_119:324277..328243- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGCACCTTGCATGGAGCTTCAGCGCGCATCAGCAGAAGATGCTTGGATCCback to top protein sequence of jgi.p|Trimin1|11335 >Trimin1|11335|CE11334_111 ID=Trimin1|11335|CE11334_111|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=302bp MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGKback to top mRNA from alignment at Contig_119:324277..328243- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10642 ID=mRNA_10642|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3967bp|location=Sequence derived from alignment at Contig_119:324277..328243- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_119:324277..328243- >mRNA_10642 ID=mRNA_10642|Name=jgi.p|Trimin1|11335|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=906bp|location=Sequence derived from alignment at Contig_119:324277..328243- (Tribonema minus UTEX_B_3156 )back to top |