mRNA_10629 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|11261 vs. uniprot
Match: A0A835ZLQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLQ1_9STRA) HSP 1 Score: 744 bits (1921), Expect = 6.000e-271 Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 2 Query: 11 MRLTTSLAALAGVCTATHAFVPCPHSAACGGSSKRSLARTQGAARPRTCTRMSEDAAAANNIIPKMEEGDSGIKMQVLSRPTPPPDRISHQSFSDALQESEALRKAQLPPAYTATATHGSAPASLDEESLKRRLMVAKTFARMAPLILLMRGENIIADDFMYFSPCTGTLNKEEFLGLLRTTDRAFPSMASFPQSFTVYKDGLVSYRTAYRTSFDGPLTIGDKELAPNGVTAISDVELCTVSFDEAGLMRSYACGVVVDKADEYKDPAVMDRIEALQTKVAGNKIKVESLAGQEHTIAYQKSMEEINHLETELTFLLEQVDVEANTGGLGGIAGLFFAVGLEWPDVHSLLGKAPHKRVGGTMQGGISVPSEVTYPVVVWN 1150
MRLTTSLAALAGVCTATHAFVPCPHSAACGGSSKRSLARTQGAARPRTCTRMSEDAAAANNIIPKMEEGDSGIKMQVLSRPTPPPDRISHQSFSDALQESEALRKAQLPPAYTATATHGSAPASLDEESLKRRLMVAKTFARMAPLILLMRGENIIADDFMYFSPCTGTLNKEEFLGLLRTTDRAFPSMASFPQSFTVYKDGLVSYRTAYRTSFDGPLTIGDKELAPNGVTAISDVELCTVSFDEAGLMRSYACGVVVDKADEYKDPAVMDRIEALQTKVAGNKIKVESLAGQEHTIAYQKSMEEINHLETELTFLLEQVDVEANTGGLGGIAGLFFAVGLEWPDVHSLLGKAPHKRVGGTMQGGISVPSEVTYPVVVWN
Sbjct: 1 MRLTTSLAALAGVCTATHAFVPCPHSAACGGSSKRSLARTQGAARPRTCTRMSEDAAAANNIIPKMEEGDSGIKMQVLSRPTPPPDRISHQSFSDALQESEALRKAQLPPAYTATATHGSAPASLDEESLKRRLMVAKTFARMAPLILLMRGENIIADDFMYFSPCTGTLNKEEFLGLLRTTDRAFPSMASFPQSFTVYKDGLVSYRTAYRTSFDGPLTIGDKELAPNGVTAISDVELCTVSFDEAGLMRSYACGVVVDKADEYKDPAVMDRIEALQTKVAGNKIKVESLAGQEHTIAYQKSMEEINHLETELTFLLEQVDVEANTGGLGGIAGLFFAVGLEWPDVHSLLGKAPHKRVGGTMQGGISVPSEVTYPVVVWN 380
BLAST of jgi.p|Trimin1|11261 vs. uniprot
Match: A0A6H5KAS4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAS4_9PHAE) HSP 1 Score: 204 bits (520), Expect = 1.260e-58 Identity = 109/247 (44.13%), Postives = 155/247 (62.75%), Query Frame = 2 Query: 389 EESLKRRLMVAKTFARMAPLILLMRGENIIADDFMYFSPCTGTLNKEEFLGLLRTTDRAFPSMASFPQSFTVYKDGLVSYRTAYRTSFDGPLTIGDKELAPNGVTAISDVELCTVSFDEAGLMRSYACGVVVDKADEYKDPAVMDRIEALQTKVAGNKIKVESLAGQEHTIAYQKSMEEINHLETELTFLLEQVDVEANTGGLGGIAGLFFAVGLEWP-DVHSLLGKAPHKRVGGTMQGGISVPSEV 1126
EE L++RL VA F +A L+LL RG+N++A+DF Y+SP TG L+++ FL L +T D AF + P VYKDG V+YR +R DG LT+GDK P+ ISDV+LC VSFD+ G++RSYA G++V+ +DP + IE ++ +V + K++SL GQE +IAY K +I+ ++ ++ LLE+V+ NT GLGGI GLF AVG E+P D+ +L G + G S P EV
Sbjct: 127 EEELRKRLEVAHVFVSLANLVLLSRGKNVLAEDFKYYSPGTGRLDRDSFLRLTKTLDVAFSTFRVVPTELVVYKDGTVTYRRTFRAVHDGYLTVGDKTYPPSQTKVISDVDLCAVSFDDMGVVRSYADGLMVEVVHAIEDPDAVAEIEEIKKRVVNQQAKMKSLEGQESSIAYSKCKADIDVMKLDMEALLERVNSAPNTEGLGGIPGLFAAVGAEFPEDLKNLEGTDAEGDIEGMRLASFSYPVEV 373
BLAST of jgi.p|Trimin1|11261 vs. uniprot
Match: A0A7S2SCC1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCC1_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 9.630e-13 Identity = 82/315 (26.03%), Postives = 135/315 (42.86%), Query Frame = 2 Query: 269 RISHQSFSDALQESEALRKAQLPPAYTATATHGSAPASLDEESLKRRL-MVAKTFARMAPLILLMRGENIIADDFMYFSPCTGTLNKEEFLGL---LRTTDRAFPSMASFPQSFTVYKDGLVSYRTAYRTSFDGPLT----------IGDKELAPNGVTAISDVELCTVSFDEAGLMRSYACGVVVDKADEYKDPAVMDRIEALQTKVAGNKIKVESLA-----GQEHTIAYQKSMEEINHLETELTFLLEQVDVEANTGGLGGIAGLFFAVGLEWPD--------VHSLLG--KAPHKRVGGTMQGGISVPSEV 1126
++ H S + S+ KA P A + A L EE + RL +A+T+A ++P+++ RG N+++DDF++FSP TG L K++FL L L T F + V+ G+V+ + SF G ++ D + AP + E V+FD+ G + G+ A+ V I + ++ K++ L E ++Q +M+E+ LE EL L E G G L A + +PD + L ++P + V G GGISVP ++
Sbjct: 56 QMMHGSQEASAWFSDMFPKALDFPEEVAEVLDTTEDAMLPEEIGEARLGAMARTWAMLSPIVITARGPNVLSDDFVFFSPSTGLLEKDKFLRLNARLATLCPDFFNKLERDGEERVHPTGVVTLNYQPKGSFQGAVSEWSWLAKGSEAADHQ-APVKKPLLGHWEAMAVAFDDQGRVLRLVSGLHAHDAEPEARNMVQSTIRDINGQIEKKLAKLKGLRKAHEENAESHPSFQATMKEMTALEEELKVLNENSHQSPTAGSFDGFRALLHAFDVPFPDDLQQCQTAIQGALMDLESPPEEVHGLRIGGISVPYDM 369
BLAST of jgi.p|Trimin1|11261 vs. uniprot
Match: R1EJF5_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EJF5_EMIHU) HSP 1 Score: 56.6 bits (135), Expect = 2.050e-5 Identity = 35/110 (31.82%), Postives = 55/110 (50.00%), Query Frame = 2 Query: 473 IIADDFMYFSPCTGTLNKEEFLGLLRTTD--RAFPSMASFPQSFTVYKDGLVSYRTAYRTSFDGPLTIGDKELAP--NGVTAISDVELCTVSFDEAGLMRSYACGVVVDK 790
++ DDF + P G L+KEEFL + + D + FP + PQ + D L R Y G T AP G + ++ + C+++FD+ GL+ Y GVV+D+
Sbjct: 108 LLGDDFAFVGPVVGPLSKEEFLKAIGSVDVQKGFPDFS--PQFYGFQVDPLEGNRVWYVARGRGTNTGPFPPFAPVPTGRSLVNPPQACSLTFDDKGLVTKYTIGVVMDR 215 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|11261 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10629 ID=mRNA_10629|Name=jgi.p|Trimin1|11261|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1180bp|location=Sequence derived from alignment at Contig_119:241644..246289+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATCCAGTATCATGAGGCTCACGACGTCCCTGGCCGCGCTGGCGGGTGTCTback to top protein sequence of jgi.p|Trimin1|11261 >Trimin1|11261|CE11260_175 ID=Trimin1|11261|CE11260_175|Name=jgi.p|Trimin1|11261|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=381bp MRLTTSLAALAGVCTATHAFVPCPHSAACGGSSKRSLARTQGAARPRTCTback to top mRNA from alignment at Contig_119:241644..246289+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10629 ID=mRNA_10629|Name=jgi.p|Trimin1|11261|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4646bp|location=Sequence derived from alignment at Contig_119:241644..246289+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_119:241644..246289+ >mRNA_10629 ID=mRNA_10629|Name=jgi.p|Trimin1|11261|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1143bp|location=Sequence derived from alignment at Contig_119:241644..246289+ (Tribonema minus UTEX_B_3156 )back to top |