mRNA_10628 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|11258 vs. uniprot
Match: A0A835ZB45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB45_9STRA) HSP 1 Score: 332 bits (851), Expect = 1.680e-113 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 3 Query: 39 MPLLNEDYQAVSHSMVQETWPEGSVNVNHWEVPTYMVQMSVFLQKRTLAVLQPIAEAWYGQPLAPLEVRPTRSFRRNSVVANHVEPHEDSAVAVKVVVECRSCERWPLFVGRPDGEVDAMYAAYGDMIMCDSLCVVQGRPLPLEGAMHSEFEAHFKLQA 515
MPLLNEDYQAVSHSMVQETWPEGSVNVNHWEVPTYMVQMSVFLQKRTLAVLQPIAEAWYGQPLAPLEVRPTRSFRRNSVVANHVEPHEDSAVAVKVVVECRSCERWPLFVGRPDGEVDAMYAAYGDMIMCDSLCVVQGRPLPLEGAMHSEFEAHFKLQA
Sbjct: 1 MPLLNEDYQAVSHSMVQETWPEGSVNVNHWEVPTYMVQMSVFLQKRTLAVLQPIAEAWYGQPLAPLEVRPTRSFRRNSVVANHVEPHEDSAVAVKVVVECRSCERWPLFVGRPDGEVDAMYAAYGDMIMCDSLCVVQGRPLPLEGAMHSEFEAHFKLQA 159
BLAST of jgi.p|Trimin1|11258 vs. uniprot
Match: A0A835ZDT5_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT5_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.060e-31 Identity = 78/90 (86.67%), Postives = 78/90 (86.67%), Query Frame = -3 Query: 551 KGGAAAGATAQGAAAKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKARDARQRRRAPAAAXXXXXRPGVRRAAA 820
KGGAA AAAKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKARDARQRRRAPAAA RPGVRRAAA
Sbjct: 337 KGGAAXXXXXXXAAAKWGVRVKRGRGGGVTVRAPKADAEEPVREARKRKKANKVLAWKLRAKARDARQRRRAPAAAAPAAARPGVRRAAA 426
BLAST of jgi.p|Trimin1|11258 vs. uniprot
Match: A0A7S1D5T7_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5T7_CYCTE) HSP 1 Score: 96.3 bits (238), Expect = 8.960e-21 Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 6 GCVKVPAPRALMPLLNEDYQAVSHSMVQETWPEGSVNVNHWEVPTYMVQMSV--FLQKRTLAVLQPIAEAWYGQPLAPLEVRPTRSFRRNSVVANHVE--PHEDSAVAVKVVVECRSCERWPLFVGRPDGEVDAMYAAYGDMIMCDSLCVVQGRPLPLEG 473
G K APRAL L ++ E W EGS VNHWE PTYMV++ ++++ ++ +QPI EAW GQPL P + R ++ ++++A HV+ P SA+ + V + E WPL + DG + G+MI+ +S V+ GRP PL+G
Sbjct: 21 GYAKEKAPRALFEQLKAFFEEHRQQQQLERWSEGSTFVNHWEAPTYMVELKGGNAMKQKIISHVQPILEAWSGQPLVPTSLYGIRIYQGDAMLAPHVDRLPLVTSAI-INVAQDVD--EPWPLELIGHDGWAVNVTIEPGEMILYESHSVLHGRPFPLQG 177
BLAST of jgi.p|Trimin1|11258 vs. uniprot
Match: A0A7S1YWR3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWR3_TRICV) HSP 1 Score: 88.6 bits (218), Expect = 2.080e-17 Identity = 58/178 (32.58%), Postives = 89/178 (50.00%), Query Frame = 3 Query: 3 LGCVKVPAPRALMPLLNEDYQAVSHSMVQETWPEGSVNVNHWEVPTYMVQMS--------VFLQKRTLAVLQPIAEAWYGQPLAPLEVRPTRSFRRNSVVANHVE--PHEDSAVAVKVVVECRSCERWPLFVGRPDGEVDAMYAAYGDMIMCDSLCVVQGRPLPLEGAMHSEFEAHFK 506
LG KV AP + LL ++A +S + E W EG +NHW++PT MV + L+ + + + W G+PL+ V R +RR +V+A HV+ P SA+ + V+ WPL V DG + GDM++ +S VV GRP PL+G+ ++ HF+
Sbjct: 37 LGFRKVRAPEKVYRLLRAFWRANRNSRLTEAWSEGDTYLNHWDMPTQMVNVDNPRLSGGGKELEWKIWDATREAIQEWIGKPLSTSSVYGIRIYRRGAVLAPHVDRLPLVSSAI---INVDQDVNAPWPLEVIAHDGVAYNVTMEPGDMVLYESHSVVHGRPYPLQGSFYANVFVHFE 211
BLAST of jgi.p|Trimin1|11258 vs. uniprot
Match: A0A7R9UF35_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF35_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.170e-15 Identity = 50/153 (32.68%), Postives = 77/153 (50.33%), Query Frame = 3 Query: 90 ETWPEGSVNVNHWEVPTYMVQMSVF------------LQKRTLAVLQPIAEAWYGQPLAPLEVRPTRSFRRNSVVANHVE--PHEDSAVAVKVVVECRSCERWPLFVGRPDGEVDAMYAAYGDMIMCDSLCVVQGRPLPLEGAMHSEFEAHFK 506
E WP+G++ VNHWEVPTYMV + L+KR +PI E W G+ L + R + +++A+H + P SA+ + V+ E WPL + G+ + A GDM++ +S V GRP PL+G ++ HF+
Sbjct: 192 EEWPKGNIYVNHWEVPTYMVNLEDHSEDPKGSLTGWQLKKRIWDGTKPIIEKWTGKELKSTSLYGIRVYHNGAILASHCDRLPLVSSAI---INVDQDVDEPWPLEIYDHSGKAHNVTMAPGDMVLYESHVCVHGRPFPLKGRYYANLFVHFE 341
BLAST of jgi.p|Trimin1|11258 vs. uniprot
Match: A0A448Z4T5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4T5_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.670e-14 Identity = 55/178 (30.90%), Postives = 85/178 (47.75%), Query Frame = 3 Query: 6 GCVKVPAPRALMPLLNEDYQAVSHSMVQETWPEGSVNVNHWEVPTYMVQMS------VFLQKRTLAVL---QPIAEAWYGQPLAPLEVRPTRSFRRNSVVANHVEPHEDSAVAVKVVVECRSCERWPLFVGRPDGEVDAMYAAYGDMIMCDSLCVVQGRPLPL--EGAMHSEFEAHFK 506
G KV PR M LL ++ + E W EG+ VNHWEVPT ++ + F ++ ++ Q + E+W GQ L R ++ +++A HV+ + A+ V + E W L V DG+ + A G+MI+ +S V+ GRP PL EGA + HF+
Sbjct: 151 GYAKVHTPRKAMELLQSFFEKNERYVWPEFWNEGNTYVNHWEVPTGLLDIGRESLPHPFAREERETIIRSIQDVLESWTGQRLVLTSAYGIRVYQEGAILAPHVDRLPLVSSAIINVFQKNVAEPWVLEVIGHDGKAHNLTAEPGEMILYESASVIHGRPYPLRGEGAKYGSVFVHFE 328
BLAST of jgi.p|Trimin1|11258 vs. uniprot
Match: A0A1E7F5N7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5N7_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 9.080e-12 Identity = 52/178 (29.21%), Postives = 82/178 (46.07%), Query Frame = 3 Query: 6 GCVKVPAPRALMPLLNEDYQAVSHSMVQETWPEGSVNVNHWEVPTYMVQM------SVFLQKRTLAVL---QPIAEAWYGQPLAPLEVRPTRSFRRNSVVANHVEPHEDSAVAVKVVVECRSCERWPLFVGRPDGEVDAMYAAYGDMIMCDSLCVVQGRPLPL--EGAMHSEFEAHFK 506
G KV AP ++ LL + + + E W +G+ VNHWEVPT ++ + S F + ++ Q + E+W Q L R + S++A HV+ + A+ V + E W L V DG + + G++I+ +S V+ GRP PL EGA HF+
Sbjct: 145 GYAKVDAPSNVLQLLTKFWDTNKRLVWPEFWDDGNTYVNHWEVPTMLLDIGRKDLFSAFTKDEYEIIIKSVQDLLESWTNQRLVLTSAYGIRLYNEGSILAPHVDRLPLVSSAIINVFQHNLTEPWMLEVIGHDGIAQNLTSKPGEIILYESASVIHGRPYPLKGEGAQCGSLFVHFE 322 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|11258 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10628 ID=mRNA_10628|Name=jgi.p|Trimin1|11258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_119:237330..240643- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGCTCGGCTGCGTAAAGGTACCAGCGCCGCGTGCGCTCATGCCCCTGCTCback to top protein sequence of jgi.p|Trimin1|11258 >Trimin1|11258|CE11257_72 ID=Trimin1|11258|CE11257_72|Name=jgi.p|Trimin1|11258|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=160bp MPLLNEDYQAVSHSMVQETWPEGSVNVNHWEVPTYMVQMSVFLQKRTLAVback to top mRNA from alignment at Contig_119:237330..240643- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10628 ID=mRNA_10628|Name=jgi.p|Trimin1|11258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3314bp|location=Sequence derived from alignment at Contig_119:237330..240643- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_119:237330..240643- >mRNA_10628 ID=mRNA_10628|Name=jgi.p|Trimin1|11258|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=480bp|location=Sequence derived from alignment at Contig_119:237330..240643- (Tribonema minus UTEX_B_3156 )back to top |