mRNA_10577 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350869
Unique NamemRNA_10577
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350869 vs. uniprot
Match: A0A835YKB0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB0_9STRA)

HSP 1 Score: 1462 bits (3784), Expect = 0.000e+0
Identity = 886/886 (100.00%), Postives = 886/886 (100.00%), Query Frame = 1 
Query:    1 MSEERTCCCVSGTASGSGTARRANISVDAPYKRXXXXXXXXXXXXXXXXXXXXXLAGGTVDAKGLCVPESKRRAYATILGHAEHVLGPRVLLQSLRDAGVEADLVVLLAADRADAWATTAALEGDGIKVHLVQPEELVRARGWLSTTLGSGHALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTFSTDVMVLEPSAEVHGALLSRLGEAAAQAVPPSDAAALLGPALLPAATRARCSTFEDLEXXXXXXXXXXXXXXXXXXXXSGPILVLNAAHMPVCGGGAARSAPGTCHRLPYTYAAPSADLDGSGRWRGGAVADRLGRDVAAEPHVVRFSDAHAPWHAAQNLGTQLFWRWNGHRVRLAELGSGXXXXXXXXXPLLLPCALLLMACVQMWPPGSAVARKRAKSLSPAPSDCCLLPLVRCNSGTLAKGKGPAGWAARAAPPACAAAFAVAWYALAARWSAXXXXXXXXXXXXXXXXXXXXAAALVAGLHAMVYAHYVAATRARTLLRDALLSGAVLSAAALAWRAVPAARAAAAAAPTGLGMCAATAAHCLGALHAGRRRRCAGGGATQVHLIGVLGTCAASALAMVLLTFAAATSPPRAWLFTAVAAARAAATVAIYVAPYAQALVQQCRQRLCAAARWAPAARSPAGKGGRGTXXXXXXXALHALVHHWELLIAAAALCWVAAPLAWELRRRADADAAPAAAAAALRYQLFHDACLASDAGYAGVGRGLAAACGAAQTFRPSVTADGALCLRAADGRFLTPLRGKLLDECAPHARFRVLLPGAAAAGDGGXXXXXTLPVXXYPRXXXXXXXXXXXXXXXXXXXGAAFCLYNAETGLYLSSARHPQPLCRRTEHWRITLWEL 2658
            MSEERTCCCVSGTASGSGTARRANISVDAPYKRXXXXXXXXXXXXXXXXXXXXXLAGGTVDAKGLCVPESKRRAYATILGHAEHVLGPRVLLQSLRDAGVEADLVVLLAADRADAWATTAALEGDGIKVHLVQPEELVRARGWLSTTLGSGHALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTFSTDVMVLEPSAEVHGALLSRLGEAAAQAVPPSDAAALLGPALLPAATRARCSTFEDLEXXXXXXXXXXXXXXXXXXXXSGPILVLNAAHMPVCGGGAARSAPGTCHRLPYTYAAPSADLDGSGRWRGGAVADRLGRDVAAEPHVVRFSDAHAPWHAAQNLGTQLFWRWNGHRVRLAELGSGXXXXXXXXXPLLLPCALLLMACVQMWPPGSAVARKRAKSLSPAPSDCCLLPLVRCNSGTLAKGKGPAGWAARAAPPACAAAFAVAWYALAARWSAXXXXXXXXXXXXXXXXXXXXAAALVAGLHAMVYAHYVAATRARTLLRDALLSGAVLSAAALAWRAVPAARAAAAAAPTGLGMCAATAAHCLGALHAGRRRRCAGGGATQVHLIGVLGTCAASALAMVLLTFAAATSPPRAWLFTAVAAARAAATVAIYVAPYAQALVQQCRQRLCAAARWAPAARSPAGKGGRGTXXXXXXXALHALVHHWELLIAAAALCWVAAPLAWELRRRADADAAPAAAAAALRYQLFHDACLASDAGYAGVGRGLAAACGAAQTFRPSVTADGALCLRAADGRFLTPLRGKLLDECAPHARFRVLLPGAAAAGDGGXXXXXTLPVXXYPRXXXXXXXXXXXXXXXXXXXGAAFCLYNAETGLYLSSARHPQPLCRRTEHWRITLWEL
Sbjct:    1 MSEERTCCCVSGTASGSGTARRANISVDAPYKRXXXXXXXXXXXXXXXXXXXXXLAGGTVDAKGLCVPESKRRAYATILGHAEHVLGPRVLLQSLRDAGVEADLVVLLAADRADAWATTAALEGDGIKVHLVQPEELVRARGWLSTTLGSGHALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTFSTDVMVLEPSAEVHGALLSRLGEAAAQAVPPSDAAALLGPALLPAATRARCSTFEDLEXXXXXXXXXXXXXXXXXXXXSGPILVLNAAHMPVCGGGAARSAPGTCHRLPYTYAAPSADLDGSGRWRGGAVADRLGRDVAAEPHVVRFSDAHAPWHAAQNLGTQLFWRWNGHRVRLAELGSGXXXXXXXXXPLLLPCALLLMACVQMWPPGSAVARKRAKSLSPAPSDCCLLPLVRCNSGTLAKGKGPAGWAARAAPPACAAAFAVAWYALAARWSAXXXXXXXXXXXXXXXXXXXXAAALVAGLHAMVYAHYVAATRARTLLRDALLSGAVLSAAALAWRAVPAARAAAAAAPTGLGMCAATAAHCLGALHAGRRRRCAGGGATQVHLIGVLGTCAASALAMVLLTFAAATSPPRAWLFTAVAAARAAATVAIYVAPYAQALVQQCRQRLCAAARWAPAARSPAGKGGRGTXXXXXXXALHALVHHWELLIAAAALCWVAAPLAWELRRRADADAAPAAAAAALRYQLFHDACLASDAGYAGVGRGLAAACGAAQTFRPSVTADGALCLRAADGRFLTPLRGKLLDECAPHARFRVLLPGAAAAGDGGXXXXXTLPVXXYPRXXXXXXXXXXXXXXXXXXXGAAFCLYNAETGLYLSSARHPQPLCRRTEHWRITLWEL 886
[Close]
BLAST of jgi.p|Trimin1|350869 vs. uniprot
Match: A0A835ZFA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA1_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.650e-36
Identity = 141/351 (40.17%), Postives = 181/351 (51.57%), Query Frame = 1 
Query:  184 AKGLCVPESKRRAYATILGHAEHVLGPRVLLQSLR-DAGVEADLVVLLAADRADAWATTAALEGDGIKVHLVQPEELVRARGWLSTTLGSGHA-LADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTFSTDV--------------MVLEPSAEVHGALLSRLGEAAAQAVPPSDAAALLGPALLPAATRARCSTFEDLEXXXXXXXXXXXXXXXXXXXXSGPILVLNAAHMPVCGGGAARSAPGTCHRLPYTYAAPSADLD------------GSGRWRGGAVADRLGRDVAAEPHVVRFSDAHAPWHAAQNLGTQLFWRWNGHRVRLAE 1152
            AK LCVP   RRAY T L   +H+LG RVL  +L+  AG  AD+VVL+  ++A+   T AALE DG++V +  PE   +AR   S   G+  A   DA LKS LW L++YDRV +L+  +L ++N D LF CDGFCA  +   GA+    DV              MVLEPSA VH A+  RL +A+A      D A+L+  AL     R+ C+ F  ++          XXXXXXXXXX    LVLNAAHMP+C GG+  ++  TC+ LP  Y A S                GSG            R  A EP ++RF+ A  PW AA      L W W   R  L E
Sbjct:   34 AKPLCVPPPSRRAYVTALMPGDHILGVRVLAHTLKLQAGAHADIVVLVWHEQANTE-TVAALEADGLQVLVAGPEP-AKAR---SGVYGASSAPFVDAYLKSQLWDLSEYDRVAYLSPASLAMRNADALFTCDGFCA--SASAGAAAPGDDVAVAALLAGVRGGGAMVLEPSAAVHAAMQQRLEDASAWEARQLDFASLVRAAL---PLRSYCAAFNWVDDFLQLKGSSGXXXXXXXXXXXA--LVLNAAHMPLCRGGSTGTSR-TCYSLPAEYDARSESAGTVTPQSLWGSNGGSGTSSSAGGDGSRRRLWADEPLLMRFAAAVRPWDAAALSSDPLAWHWQRVRATLRE 371
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BLAST of jgi.p|Trimin1|350869 vs. uniprot
Match: A0A6H5JRP3_9PHAE (GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRP3_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.740e-33
Identity = 142/470 (30.21%), Postives = 181/470 (38.51%), Query Frame = 1 
Query:  193 LCVPESKRRAYATILG----------------HAEHVLGPRVLLQSLRDAGVEADLVVLLAADRADAWATTAALEGDGIKVHLVQPEELVRARGWLSTTLGSGHALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCA--------------PMTGEEGASTF------------------------------------------------------STDVMVLEPSAEVHGALLSRLGEAAAQAVPPSDAAALLGPALLPAATRA--RCSTFED--------------------------LEXXXXXXXXXXXXXXXXXXXXSG----------PILVLNAAHMPVCGGGAARSAPGTCHRLPYTYAAPSADLDGS-GRWRGGAVADRLGRDVAAEPHVVRFSDAHAPWHAAQNLGTQLFWRWNGHRVRLAELGSGXXXXXXXXXPLLLPCALLLMACV 1233
            LC P    RAY T +                   + +LG RVL QSLR AG + D+VVL+  +RA    T  +L  DG+ V +V P+ L  A G + +         +   K  LWSLT YDRVVFL+ R+L+ KNPD LFAC+GFCA              P   +E  +                                                        ST VMVLEPS EVH A+L +L    A      +A   L   L+ A T A  RC+ FED                           E                     G          P+++LN  H+P C  G  R++ G C RLPYT+AAPS D  G    W GGA  D     V  EPH+V F+D   PW     L   LFW+WN +R +L E   G            +PC +L  A V
Sbjct:  155 LCSPAEGSRAYVTTIAAIGGGFGASGGSNGDKSGDRLLGARVLAQSLRSAGAKGDIVVLVPLERATG-PTLDSLRRDGLTVQIV-PKGLQSAGGEIVSE--------ELMTKVSLWSLTSYDRVVFLDPRSLIQKNPDALFACEGFCAAGAVHSPSSSPSFQPGWAQEAGAAVGAXXXXXXXXXXXXHGXXXXXXXXXXXXXXXXXXXXXXXXVLEKPLSVPPSWQPSTSVMVLEPSLEVHAAMLDKLTRTPAAGS--LEAQVFLSSFLMGAGTDAGDRCTQFEDPVENAPSDRGRSRGGGLVAGQGXXXXWEDEEAGGAIFQGDGGFGDAGVDGGGSFLEDALMPVVLLNGPHVPRCSAGRKRTSEGVCQRLPYTFAAPSTDFQGGKNSWGGGAQKDDR---VTPEPHIVHFADEDTPWKRLAYLHKPLFWKWNAYREQL-ECPYGNFFAPWVL--FFIPCVVLAFARV 606
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BLAST of jgi.p|Trimin1|350869 vs. uniprot
Match: UPI0012BB89A7 (glycosyltransferase family 8 protein n=1 Tax=Roseibium denhamense TaxID=76305 RepID=UPI0012BB89A7)

HSP 1 Score: 75.1 bits (183), Expect = 6.910e-11
Identity = 61/177 (34.46%), Postives = 82/177 (46.33%), Query Frame = 1 
Query:  202 PESKRRAYATILGHAEHVLGPRVLLQSLRDAGVEADLVVL----LAA----DRADAWATTAALEGDGIKVHLVQPEELVRARGWLSTTLGSG---HALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTF---STDVMVLEPSAEVHGALLSRLGE 690
            P   R AY T++ + ++++G   LL+SLR     ADLVVL    +AA    + A A A  A  E         +  E  R       T G     H   D  +K  LW LT+YD+VVF+++ ALVLKN D LF    FCA     EG   F   ++ V    PS      ++ RL E
Sbjct:   10 PAQSRTAYVTLVTNQDYLMGASALLRSLRQTQTTADLVVLATPGVAAGDLPELASAGARIAKCERLATSAQFNERHERGRLHKAAPFTKGGKPVFHTPLDNFVKLRLWQLTEYDKVVFIDADALVLKNCDRLFDYPEFCAAPNVYEGLGDFHRLNSGVFTATPSEATFADMMQRLDE 186
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BLAST of jgi.p|Trimin1|350869 vs. uniprot
Match: UPI002002FE4D (glycosyl transferase n=1 Tax=Roseibium sp. CAU 1639 TaxID=2933272 RepID=UPI002002FE4D)

HSP 1 Score: 73.9 bits (180), Expect = 1.550e-10
Identity = 61/173 (35.26%), Postives = 80/173 (46.24%), Query Frame = 1 
Query:  214 RRAYATILGHAEHVLGPRVLLQSLRDAGVEADLVVLLAAD-RADAWATTAALEG-----DGIKVHLVQPEELVRARGWLSTTLGSG-----HALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTF---STDVMVLEPSAEVHGALLSRLGE 690
            R AY T++ + ++VLG   LL+SLR +G  ADLVVL       D  A   A E      D +       E   R R   +     G     H   D  +K  LW LT+YD+VVF+++ ALVLKN D LF    FCA     E    F   ++ V    PS     A+L RL +
Sbjct:   14 RTAYVTLVTNRDYVLGATALLRSLRRSGTSADLVVLCTPGVDEDDLAVLKAFEPRLGRCDRLPTSDAFNERHERGRLHKAAPFTKGGKPVFHTPLDNFVKLRLWQLTEYDKVVFIDADALVLKNIDKLFGYPEFCAAPNVYESLKDFHRMNSGVFTAVPSEATFAAMLERLDQ 186
[Close]
BLAST of jgi.p|Trimin1|350869 vs. uniprot
Match: A0A5P9D144_9HYPH (Glycosyl transferase family 8 n=1 Tax=Labrenzia sp. THAF82 TaxID=2587861 RepID=A0A5P9D144_9HYPH)

HSP 1 Score: 73.2 bits (178), Expect = 2.660e-10
Identity = 61/175 (34.86%), Postives = 82/175 (46.86%), Query Frame = 1 
Query:  208 SKRRAYATILGHAEHVLGPRVLLQSLRDAGVEADLVVLLA--ADRADAWATTAALEGDGIKVHLVQP----EELVRARGWLSTTLGSG-----HALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTF---STDVMVLEPSAEVHGALLSRLGE 690
            S R AY T++ + ++VLG   LL+SLR  G EADLVVL     + AD  A  + +   G    L       E   R R   +     G     H   D  +K  LW L  Y+RVVF+++ ALVLKN D LF    FCA     EG + F   ++ V    PS     A+ + L +
Sbjct:   12 SARVAYVTLVTNQDYVLGATALLRSLRRTGTEADLVVLHTPGVEEADLTALESFMPRFGRCERLATSAAFNERHERGRLHKAAPFSKGGKPLFHTPLDNFVKLRLWQLRDYERVVFIDADALVLKNCDKLFEYPEFCAAPNVYEGLADFHRLNSGVFTARPSDATFSAMATALDQ 186
[Close]
BLAST of jgi.p|Trimin1|350869 vs. uniprot
Match: UPI0019D3A766 (glycosyl transferase n=2 Tax=Proteobacteria TaxID=1224 RepID=UPI0019D3A766)

HSP 1 Score: 72.4 bits (176), Expect = 3.910e-10
Identity = 56/171 (32.75%), Postives = 86/171 (50.29%), Query Frame = 1 
Query:  214 RRAYATILGHAEHVLGPRVLLQSLRDAGVEADLVVL-LAADRADAWATTAALEGDGIKVHLVQPEELV-----RARGWLSTTLGSG-----HALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTF---STDVMVLEPSAEVHGALLSRL 684
            ++AY T++ +A++ +G   L++SLR  G +ADLVV+      A+A    AAL    +   L+   +       RAR   +     G     H   D   K  LW LT+Y+RVVF+++ A+V++N D LF    F A     EG + F   ++ V V +PS     A+L RL
Sbjct:    3 KQAYVTLVTNADYAMGALALVRSLRLTGTDADLVVMHTGGTPAEALEPLAALGALLVPAELLPTSDAFNERHQRARLHANAPFTKGNKPAFHTPLDNFAKLRLWQLTEYERVVFIDADAVVVRNIDRLFGYPEFSAAPNVYEGLADFHRLNSGVFVAQPSQATFAAMLERL 173
[Close]
BLAST of jgi.p|Trimin1|350869 vs. uniprot
Match: A0A7S8EK20_9HYPH (Glycosyl transferase n=1 Tax=Mesorhizobium sp. NBSH29 TaxID=2654249 RepID=A0A7S8EK20_9HYPH)

HSP 1 Score: 72.4 bits (176), Expect = 4.090e-10
Identity = 57/174 (32.76%), Postives = 83/174 (47.70%), Query Frame = 1 
Query:  208 SKRRAYATILGHAEHVLGPRVLLQSLRDAGVEADLVVLLAADRADAWATTAALEG------------DGIKVHLVQPEELVRARGWLSTTLGSGHALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTF---STDVMVLEPSAEVHGALLSRL 684
            S+R AY T++ +A++  G   L++SL+ +G EAD+VVL      +      A  G            DG      Q E L  A  +      + H   D   K  LW +TQY+R VF+++ A+V+KN D LFA   FCA     E  + F   ++ V V  PSA    A+L +L
Sbjct:    2 SRRFAYVTLVTNADYAKGALALVRSLQHSGTEADIVVLHTGGATEQDLAPLAELGVLLLPADLLPTSDGFNQRH-QRERLHAAAPFTKGNKPAFHTPLDNFAKLRLWEMTQYERCVFIDADAVVVKNIDRLFAYPEFCAAPNVYESVADFHRLNSGVFVALPSAATFAAMLEKL 174
[Close]
BLAST of jgi.p|Trimin1|350869 vs. uniprot
Match: A0A0Q5VUG9_9HYPH (Glycosyl transferase n=2 Tax=unclassified Rhizobium TaxID=2613769 RepID=A0A0Q5VUG9_9HYPH)

HSP 1 Score: 72.0 bits (175), Expect = 6.140e-10
Identity = 58/169 (34.32%), Postives = 82/169 (48.52%), Query Frame = 1 
Query:  220 AYATILGHAEHVLGPRVLLQSLRDAGVEADLVVL-LAADRADAWATTAALEGDGIKVHLVQ-----PEELVRARGWLSTTLGSG-----HALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTF---STDVMVLEPSAEVHGALLSRL 684
            AY T++ +A++ +G + L +S+R  G  AD+VVL   A  A   A  AA +   I+  L+       E   R     +     G     H+  D   K  LW LT Y+R VF+++ ALVL+N D LFA   FCA     E  + F   ++ V V  PS E   A+L RL
Sbjct:    8 AYVTLVTNADYAMGAKALCRSIRRTGTRADIVVLHTPAVSAGMLAALAAFDVRLIETGLLPLSDAFDERHARRNVHAAAPFTKGRKPAFHSPLDNFCKLRLWQLTDYERCVFIDADALVLRNIDRLFAYPEFCAAPNVYESLADFHRMNSGVFVATPSEETFQAMLQRL 176
[Close]
BLAST of jgi.p|Trimin1|350869 vs. uniprot
Match: A0A1Q9AZP7_9HYPH (Glycosyl transferase n=2 Tax=Rhizobium oryzae TaxID=464029 RepID=A0A1Q9AZP7_9HYPH)

HSP 1 Score: 72.0 bits (175), Expect = 7.630e-10
Identity = 60/175 (34.29%), Postives = 87/175 (49.71%), Query Frame = 1 
Query:  208 SKRRAYATILGHAEHVLGPRVLLQSLRDAGVEADLVVLLAADRADAWATTAALEGDGIKV----HLVQPEELVR--ARGWL--STTLGSG-----HALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTGEEGASTF---STDVMVLEPSAEVHGALLSRL 684
            S   A+ T++ +A++ +G R LLQSLR  G +ADLVVL       A    A LE  G ++    HL   +   +  ARG L  +     G     H+  D   K  LW LT Y+RV+FL++  +VL+  D  FA   FCA     +  + F   ++ V V  PS +   A+L+RL
Sbjct:   16 SGNHAFVTLVTNADYAMGARALLQSLRQTGTKADLVVLHTGGVDGA--RLAPLEALGARLVACDHLPLSDAFNQRHARGALHGAAPFAKGRKPLFHSPLDNFCKLRLWQLTDYERVIFLDADTIVLRPIDRFFAYPEFCAAPNVYQSLADFHRLNSGVFVAAPSEDTFAAMLARL 188
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350869 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKB0_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZFA1_9STRA2.650e-3640.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JRP3_9PHAE1.740e-3330.21GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
UPI0012BB89A76.910e-1134.46glycosyltransferase family 8 protein n=1 Tax=Rosei... [more]
UPI002002FE4D1.550e-1035.26glycosyl transferase n=1 Tax=Roseibium sp. CAU 163... [more]
A0A5P9D144_9HYPH2.660e-1034.86Glycosyl transferase family 8 n=1 Tax=Labrenzia sp... [more]
UPI0019D3A7663.910e-1032.75glycosyl transferase n=2 Tax=Proteobacteria TaxID=... [more]
A0A7S8EK20_9HYPH4.090e-1032.76Glycosyl transferase n=1 Tax=Mesorhizobium sp. NBS... [more]
A0A0Q5VUG9_9HYPH6.140e-1034.32Glycosyl transferase n=2 Tax=unclassified Rhizobiu... [more]
A0A1Q9AZP7_9HYPH7.630e-1034.29Glycosyl transferase n=2 Tax=Rhizobium oryzae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:595662..598512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350869|estExt_Genemark1.C_Ctg_740061
DescriptionBelongs to the glycosyltransferase 8 family
COG categoryG
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG5597@1|root,KOG1950@2759|Eukaryota,37JAF@33090|Viridiplantae,34JD9@3041|Chlorophyta
Evalue2.72e-12
Seed ortholog3067.XP_002954821.1
Hectar predicted targeting categorysignal anchor
TranscriptId351191
TrackFilteredModels1
ProteinId350869
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350869gene_10577Tribonema minus UTEX_B_3156 geneContig_74 595662..598512 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10577_1exon_10577_1Tribonema minus UTEX_B_3156 exonContig_74 595662..598512 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10577UTR3_10577Tribonema minus UTEX_B_3156 three_prime_UTRContig_74 595662..595851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10577CDS_10577Tribonema minus UTEX_B_3156 CDSContig_74 595852..598512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350869Trimin1|350869|estExt_Genemark1.C_Ctg_740061Tribonema minus UTEX_B_3156 polypeptideContig_74 595852..598512 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10577 ID=mRNA_10577|Name=jgi.p|Trimin1|350869|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2851bp|location=Sequence derived from alignment at Contig_74:595662..598512- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGGAGAGGACGTGCTGCTGCGTCAGCGGCACAGCTTCCGGCTC
TGGTACCGCACGGCGCGCCAATATCAGCGTGGATGCGCCATATAAGCGTA
GGAGAAGAAGGCGGCAGGCGTCGCCATCGCTCTCATCGGCATGCATCATT
GTTCTGCTGATCTTGGCGGGCGGCACGGTCGACGCCAAGGGGCTGTGCGT
CCCCGAGAGCAAGCGGAGAGCCTATGCAACCATACTGGGCCACGCGGAGC
ACGTCCTGGGACCTCGTGTGCTGCTTCAGAGTCTAAGAGACGCAGGGGTC
GAGGCTGACCTCGTCGTCCTCTTGGCAGCGGATCGCGCAGACGCTTGGGC
TACGACCGCAGCGCTAGAAGGCGATGGCATCAAGGTGCATCTTGTGCAGC
CAGAGGAGCTGGTGCGGGCGAGGGGGTGGTTATCCACCACTCTGGGGAGC
GGACACGCTTTAGCGGACGCCTCCCTCAAATCCCACCTCTGGTCCCTCAC
GCAGTACGACCGCGTCGTCTTTCTCAACTCTCGAGCCCTAGTGCTGAAGA
ACCCGGACACCCTGTTTGCCTGCGACGGGTTCTGCGCGCCCATGACCGGC
GAGGAGGGCGCCAGCACATTTTCGACGGACGTCATGGTTCTGGAGCCGAG
CGCGGAGGTGCACGGGGCGCTGCTGTCGCGGCTGGGCGAGGCCGCTGCGC
AGGCGGTGCCGCCGTCGGACGCGGCAGCGCTGCTCGGCCCCGCCCTGCTG
CCGGCCGCGACGCGCGCGCGCTGCTCCACCTTTGAGGACCTGGAGGACTT
CATGGACGGTCTCGATGGCGGCGGCGGCGGCGAAGCTGCCTCCGCCGCCG
GCAGCAGCGGGCCGATCCTCGTCCTCAACGCGGCGCACATGCCCGTGTGC
GGCGGCGGCGCCGCGCGCAGCGCGCCCGGCACGTGCCACCGCCTGCCCTA
CACGTACGCGGCGCCCAGCGCGGATCTGGACGGCAGCGGGCGCTGGCGCG
GCGGCGCGGTCGCGGACCGGCTCGGCCGCGACGTCGCCGCGGAGCCGCAC
GTCGTGCGCTTCAGCGACGCGCACGCGCCGTGGCACGCGGCGCAGAACCT
CGGCACGCAGCTGTTCTGGCGCTGGAACGGGCACCGCGTGCGGCTGGCGG
AGCTGGGCAGCGGCGGCGGCGGCGCGGCGGCGGTGCTGCTGCCGCTGCTG
CTGCCGTGCGCGCTGCTGCTCATGGCGTGCGTCCAGATGTGGCCGCCCGG
CAGCGCGGTCGCCCGCAAGCGCGCCAAGTCGCTCTCGCCCGCGCCCTCCG
ACTGCTGCTTGCTGCCGCTGGTGCGCTGCAACAGCGGCACGCTCGCCAAG
GGCAAGGGGCCCGCGGGCTGGGCCGCGCGCGCCGCGCCGCCGGCGTGCGC
GGCGGCCTTCGCGGTCGCCTGGTACGCGCTGGCGGCGCGCTGGAGCGCGG
GCACGGCGGCGGCGGCGGCGAGCCCCGCGGCGGCGGCGCTGGTGGCGCAC
GCGTGGCTTGCGGCCGCGCTCGTGGCAGGCCTCCACGCGATGGTCTACGC
GCACTACGTCGCCGCGACGCGCGCGCGGACGCTGCTGCGGGACGCCCTGC
TGAGCGGCGCCGTGCTCTCGGCGGCGGCGCTGGCGTGGCGCGCGGTGCCG
GCGGCGCGCGCGGCGGCGGCGGCGGCGCCGACGGGGCTCGGCATGTGCGC
GGCGACGGCGGCGCACTGCCTCGGCGCGCTGCACGCGGGGCGGCGCCGCC
GCTGCGCCGGCGGCGGCGCCACGCAGGTGCACCTCATTGGCGTCCTCGGC
ACCTGCGCCGCGTCGGCGCTGGCCATGGTGCTGCTCACCTTCGCCGCGGC
GACGTCGCCGCCGCGCGCGTGGCTGTTCACGGCCGTGGCGGCGGCGCGCG
CGGCGGCGACGGTCGCCATCTACGTCGCGCCGTACGCGCAGGCGCTCGTG
CAGCAGTGCCGGCAGCGGCTGTGCGCGGCGGCGCGCTGGGCGCCGGCGGC
GCGCAGTCCGGCGGGCAAAGGGGGGAGGGGCACGGCGGCGGCGGCGCGCG
CCGCCGCGCTGCACGCGCTCGTGCACCACTGGGAGCTGCTGATCGCGGCG
GCGGCGCTGTGCTGGGTGGCGGCGCCGCTGGCGTGGGAGCTGCGGCGGCG
CGCGGACGCGGACGCGGCACCCGCGGCGGCGGCGGCGGCGCTGCGCTACC
AGCTGTTCCACGACGCGTGCCTCGCGAGCGACGCAGGGTACGCGGGCGTT
GGGCGCGGCCTCGCGGCGGCGTGCGGCGCGGCGCAGACGTTCCGGCCGAG
CGTCACCGCGGACGGCGCGCTGTGCCTGCGCGCCGCCGACGGACGCTTCC
TCACGCCGCTGCGCGGCAAGCTGCTGGACGAGTGCGCGCCGCACGCGCGC
TTCCGCGTGCTGCTGCCGGGCGCGGCCGCCGCCGGCGACGGCGGCAGCGG
CGGCGCTGAGACGCTGCCGGTGCTGCCATATCCTCGCTCCGGCGGTAGCG
GCGGCAACGGCGGCGGCGGCGGCAGCAGCGGTGGCGGCGGCAACGGCGCC
GCGTTCTGCCTGTACAATGCGGAGACAGGGCTGTACCTGAGCTCCGCCAG
GCACCCGCAGCCGCTGTGCCGGCGCACCGAGCACTGGCGGATCACGCTGT
GGGAATTGTGATGTGGCGGCGGCAGGTGCAGTTTGTGTGGAGGCGCAGCG
GCAGCAGCACGGCTGCGGCGACGGCCATAGTCAGTGTTGATCGTGTTGTT
TTTTATATATCAAAGGCGCCTAGTCCAGAGACAGAAGCACATTTAGCAGC
AGCTGCGTGGAGCGCACGCAGTAAGTACGCCCCCCCCCCCCCCGCCTCCC
C
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protein sequence of jgi.p|Trimin1|350869

>Trimin1|350869|estExt_Genemark1.C_Ctg_740061 ID=Trimin1|350869|estExt_Genemark1.C_Ctg_740061|Name=jgi.p|Trimin1|350869|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=887bp
MSEERTCCCVSGTASGSGTARRANISVDAPYKRRRRRRQASPSLSSACII
VLLILAGGTVDAKGLCVPESKRRAYATILGHAEHVLGPRVLLQSLRDAGV
EADLVVLLAADRADAWATTAALEGDGIKVHLVQPEELVRARGWLSTTLGS
GHALADASLKSHLWSLTQYDRVVFLNSRALVLKNPDTLFACDGFCAPMTG
EEGASTFSTDVMVLEPSAEVHGALLSRLGEAAAQAVPPSDAAALLGPALL
PAATRARCSTFEDLEDFMDGLDGGGGGEAASAAGSSGPILVLNAAHMPVC
GGGAARSAPGTCHRLPYTYAAPSADLDGSGRWRGGAVADRLGRDVAAEPH
VVRFSDAHAPWHAAQNLGTQLFWRWNGHRVRLAELGSGGGGAAAVLLPLL
LPCALLLMACVQMWPPGSAVARKRAKSLSPAPSDCCLLPLVRCNSGTLAK
GKGPAGWAARAAPPACAAAFAVAWYALAARWSAGTAAAAASPAAAALVAH
AWLAAALVAGLHAMVYAHYVAATRARTLLRDALLSGAVLSAAALAWRAVP
AARAAAAAAPTGLGMCAATAAHCLGALHAGRRRRCAGGGATQVHLIGVLG
TCAASALAMVLLTFAAATSPPRAWLFTAVAAARAAATVAIYVAPYAQALV
QQCRQRLCAAARWAPAARSPAGKGGRGTAAAARAAALHALVHHWELLIAA
AALCWVAAPLAWELRRRADADAAPAAAAAALRYQLFHDACLASDAGYAGV
GRGLAAACGAAQTFRPSVTADGALCLRAADGRFLTPLRGKLLDECAPHAR
FRVLLPGAAAAGDGGSGGAETLPVLPYPRSGGSGGNGGGGGSSGGGGNGA
AFCLYNAETGLYLSSARHPQPLCRRTEHWRITLWEL*
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mRNA from alignment at Contig_74:595662..598512-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10577 ID=mRNA_10577|Name=jgi.p|Trimin1|350869|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2851bp|location=Sequence derived from alignment at Contig_74:595662..598512- (Tribonema minus UTEX_B_3156 )
ATGAGCGAGGAGAGGACGTGCTGCTGCGTCAGCGGCACAGCTTCCGGCTC
TGGTACCGCACGGCGCGCCAATATCAGCGTGGATGCGCCATATAAGCGTA
GGAGAAGAAGGCGGCAGGCGTCGCCATCGCTCTCATCGGCATGCATCATT
GTTCTGCTGATCTTGGCGGGCGGCACGGTCGACGCCAAGGGGCTGTGCGT
CCCCGAGAGCAAGCGGAGAGCCTATGCAACCATACTGGGCCACGCGGAGC
ACGTCCTGGGACCTCGTGTGCTGCTTCAGAGTCTAAGAGACGCAGGGGTC
GAGGCTGACCTCGTCGTCCTCTTGGCAGCGGATCGCGCAGACGCTTGGGC
TACGACCGCAGCGCTAGAAGGCGATGGCATCAAGGTGCATCTTGTGCAGC
CAGAGGAGCTGGTGCGGGCGAGGGGGTGGTTATCCACCACTCTGGGGAGC
GGACACGCTTTAGCGGACGCCTCCCTCAAATCCCACCTCTGGTCCCTCAC
GCAGTACGACCGCGTCGTCTTTCTCAACTCTCGAGCCCTAGTGCTGAAGA
ACCCGGACACCCTGTTTGCCTGCGACGGGTTCTGCGCGCCCATGACCGGC
GAGGAGGGCGCCAGCACATTTTCGACGGACGTCATGGTTCTGGAGCCGAG
CGCGGAGGTGCACGGGGCGCTGCTGTCGCGGCTGGGCGAGGCCGCTGCGC
AGGCGGTGCCGCCGTCGGACGCGGCAGCGCTGCTCGGCCCCGCCCTGCTG
CCGGCCGCGACGCGCGCGCGCTGCTCCACCTTTGAGGACCTGGAGGACTT
CATGGACGGTCTCGATGGCGGCGGCGGCGGCGAAGCTGCCTCCGCCGCCG
GCAGCAGCGGGCCGATCCTCGTCCTCAACGCGGCGCACATGCCCGTGTGC
GGCGGCGGCGCCGCGCGCAGCGCGCCCGGCACGTGCCACCGCCTGCCCTA
CACGTACGCGGCGCCCAGCGCGGATCTGGACGGCAGCGGGCGCTGGCGCG
GCGGCGCGGTCGCGGACCGGCTCGGCCGCGACGTCGCCGCGGAGCCGCAC
GTCGTGCGCTTCAGCGACGCGCACGCGCCGTGGCACGCGGCGCAGAACCT
CGGCACGCAGCTGTTCTGGCGCTGGAACGGGCACCGCGTGCGGCTGGCGG
AGCTGGGCAGCGGCGGCGGCGGCGCGGCGGCGGTGCTGCTGCCGCTGCTG
CTGCCGTGCGCGCTGCTGCTCATGGCGTGCGTCCAGATGTGGCCGCCCGG
CAGCGCGGTCGCCCGCAAGCGCGCCAAGTCGCTCTCGCCCGCGCCCTCCG
ACTGCTGCTTGCTGCCGCTGGTGCGCTGCAACAGCGGCACGCTCGCCAAG
GGCAAGGGGCCCGCGGGCTGGGCCGCGCGCGCCGCGCCGCCGGCGTGCGC
GGCGGCCTTCGCGGTCGCCTGGTACGCGCTGGCGGCGCGCTGGAGCGCGG
GCACGGCGGCGGCGGCGGCGAGCCCCGCGGCGGCGGCGCTGGTGGCGCAC
GCGTGGCTTGCGGCCGCGCTCGTGGCAGGCCTCCACGCGATGGTCTACGC
GCACTACGTCGCCGCGACGCGCGCGCGGACGCTGCTGCGGGACGCCCTGC
TGAGCGGCGCCGTGCTCTCGGCGGCGGCGCTGGCGTGGCGCGCGGTGCCG
GCGGCGCGCGCGGCGGCGGCGGCGGCGCCGACGGGGCTCGGCATGTGCGC
GGCGACGGCGGCGCACTGCCTCGGCGCGCTGCACGCGGGGCGGCGCCGCC
GCTGCGCCGGCGGCGGCGCCACGCAGGTGCACCTCATTGGCGTCCTCGGC
ACCTGCGCCGCGTCGGCGCTGGCCATGGTGCTGCTCACCTTCGCCGCGGC
GACGTCGCCGCCGCGCGCGTGGCTGTTCACGGCCGTGGCGGCGGCGCGCG
CGGCGGCGACGGTCGCCATCTACGTCGCGCCGTACGCGCAGGCGCTCGTG
CAGCAGTGCCGGCAGCGGCTGTGCGCGGCGGCGCGCTGGGCGCCGGCGGC
GCGCAGTCCGGCGGGCAAAGGGGGGAGGGGCACGGCGGCGGCGGCGCGCG
CCGCCGCGCTGCACGCGCTCGTGCACCACTGGGAGCTGCTGATCGCGGCG
GCGGCGCTGTGCTGGGTGGCGGCGCCGCTGGCGTGGGAGCTGCGGCGGCG
CGCGGACGCGGACGCGGCACCCGCGGCGGCGGCGGCGGCGCTGCGCTACC
AGCTGTTCCACGACGCGTGCCTCGCGAGCGACGCAGGGTACGCGGGCGTT
GGGCGCGGCCTCGCGGCGGCGTGCGGCGCGGCGCAGACGTTCCGGCCGAG
CGTCACCGCGGACGGCGCGCTGTGCCTGCGCGCCGCCGACGGACGCTTCC
TCACGCCGCTGCGCGGCAAGCTGCTGGACGAGTGCGCGCCGCACGCGCGC
TTCCGCGTGCTGCTGCCGGGCGCGGCCGCCGCCGGCGACGGCGGCAGCGG
CGGCGCTGAGACGCTGCCGGTGCTGCCATATCCTCGCTCCGGCGGTAGCG
GCGGCAACGGCGGCGGCGGCGGCAGCAGCGGTGGCGGCGGCAACGGCGCC
GCGTTCTGCCTGTACAATGCGGAGACAGGGCTGTACCTGAGCTCCGCCAG
GCACCCGCAGCCGCTGTGCCGGCGCACCGAGCACTGGCGGATCACGCTGT
GGGAATTGTGATGTGGCGGCGGCAGGTGCAGTTTGTGTGGAGGCGCAGCG
GCAGCAGCACGGCTGCGGCGACGGCCATAGTCAGTGTTGATCGTGTTGTT
TTTTATATATCAAAGGCGCCTAGTCCAGAGACAGAAGCACATTTAGCAGC
AGCTGCGTGGAGCGCACGCAGTAAGTACGCCCCCCCCCCCCCCGCCTCCC
C
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Coding sequence (CDS) from alignment at Contig_74:595662..598512-

>mRNA_10577 ID=mRNA_10577|Name=jgi.p|Trimin1|350869|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2661bp|location=Sequence derived from alignment at Contig_74:595662..598512- (Tribonema minus UTEX_B_3156 )
ATGAGCGAGGAGAGGACGTGCTGCTGCGTCAGCGGCACAGCTTCCGGCTC
TGGTACCGCACGGCGCGCCAATATCAGCGTGGATGCGCCATATAAGCGTA
GGAGAAGAAGGCGGCAGGCGTCGCCATCGCTCTCATCGGCATGCATCATT
GTTCTGCTGATCTTGGCGGGCGGCACGGTCGACGCCAAGGGGCTGTGCGT
CCCCGAGAGCAAGCGGAGAGCCTATGCAACCATACTGGGCCACGCGGAGC
ACGTCCTGGGACCTCGTGTGCTGCTTCAGAGTCTAAGAGACGCAGGGGTC
GAGGCTGACCTCGTCGTCCTCTTGGCAGCGGATCGCGCAGACGCTTGGGC
TACGACCGCAGCGCTAGAAGGCGATGGCATCAAGGTGCATCTTGTGCAGC
CAGAGGAGCTGGTGCGGGCGAGGGGGTGGTTATCCACCACTCTGGGGAGC
GGACACGCTTTAGCGGACGCCTCCCTCAAATCCCACCTCTGGTCCCTCAC
GCAGTACGACCGCGTCGTCTTTCTCAACTCTCGAGCCCTAGTGCTGAAGA
ACCCGGACACCCTGTTTGCCTGCGACGGGTTCTGCGCGCCCATGACCGGC
GAGGAGGGCGCCAGCACATTTTCGACGGACGTCATGGTTCTGGAGCCGAG
CGCGGAGGTGCACGGGGCGCTGCTGTCGCGGCTGGGCGAGGCCGCTGCGC
AGGCGGTGCCGCCGTCGGACGCGGCAGCGCTGCTCGGCCCCGCCCTGCTG
CCGGCCGCGACGCGCGCGCGCTGCTCCACCTTTGAGGACCTGGAGGACTT
CATGGACGGTCTCGATGGCGGCGGCGGCGGCGAAGCTGCCTCCGCCGCCG
GCAGCAGCGGGCCGATCCTCGTCCTCAACGCGGCGCACATGCCCGTGTGC
GGCGGCGGCGCCGCGCGCAGCGCGCCCGGCACGTGCCACCGCCTGCCCTA
CACGTACGCGGCGCCCAGCGCGGATCTGGACGGCAGCGGGCGCTGGCGCG
GCGGCGCGGTCGCGGACCGGCTCGGCCGCGACGTCGCCGCGGAGCCGCAC
GTCGTGCGCTTCAGCGACGCGCACGCGCCGTGGCACGCGGCGCAGAACCT
CGGCACGCAGCTGTTCTGGCGCTGGAACGGGCACCGCGTGCGGCTGGCGG
AGCTGGGCAGCGGCGGCGGCGGCGCGGCGGCGGTGCTGCTGCCGCTGCTG
CTGCCGTGCGCGCTGCTGCTCATGGCGTGCGTCCAGATGTGGCCGCCCGG
CAGCGCGGTCGCCCGCAAGCGCGCCAAGTCGCTCTCGCCCGCGCCCTCCG
ACTGCTGCTTGCTGCCGCTGGTGCGCTGCAACAGCGGCACGCTCGCCAAG
GGCAAGGGGCCCGCGGGCTGGGCCGCGCGCGCCGCGCCGCCGGCGTGCGC
GGCGGCCTTCGCGGTCGCCTGGTACGCGCTGGCGGCGCGCTGGAGCGCGG
GCACGGCGGCGGCGGCGGCGAGCCCCGCGGCGGCGGCGCTGGTGGCGCAC
GCGTGGCTTGCGGCCGCGCTCGTGGCAGGCCTCCACGCGATGGTCTACGC
GCACTACGTCGCCGCGACGCGCGCGCGGACGCTGCTGCGGGACGCCCTGC
TGAGCGGCGCCGTGCTCTCGGCGGCGGCGCTGGCGTGGCGCGCGGTGCCG
GCGGCGCGCGCGGCGGCGGCGGCGGCGCCGACGGGGCTCGGCATGTGCGC
GGCGACGGCGGCGCACTGCCTCGGCGCGCTGCACGCGGGGCGGCGCCGCC
GCTGCGCCGGCGGCGGCGCCACGCAGGTGCACCTCATTGGCGTCCTCGGC
ACCTGCGCCGCGTCGGCGCTGGCCATGGTGCTGCTCACCTTCGCCGCGGC
GACGTCGCCGCCGCGCGCGTGGCTGTTCACGGCCGTGGCGGCGGCGCGCG
CGGCGGCGACGGTCGCCATCTACGTCGCGCCGTACGCGCAGGCGCTCGTG
CAGCAGTGCCGGCAGCGGCTGTGCGCGGCGGCGCGCTGGGCGCCGGCGGC
GCGCAGTCCGGCGGGCAAAGGGGGGAGGGGCACGGCGGCGGCGGCGCGCG
CCGCCGCGCTGCACGCGCTCGTGCACCACTGGGAGCTGCTGATCGCGGCG
GCGGCGCTGTGCTGGGTGGCGGCGCCGCTGGCGTGGGAGCTGCGGCGGCG
CGCGGACGCGGACGCGGCACCCGCGGCGGCGGCGGCGGCGCTGCGCTACC
AGCTGTTCCACGACGCGTGCCTCGCGAGCGACGCAGGGTACGCGGGCGTT
GGGCGCGGCCTCGCGGCGGCGTGCGGCGCGGCGCAGACGTTCCGGCCGAG
CGTCACCGCGGACGGCGCGCTGTGCCTGCGCGCCGCCGACGGACGCTTCC
TCACGCCGCTGCGCGGCAAGCTGCTGGACGAGTGCGCGCCGCACGCGCGC
TTCCGCGTGCTGCTGCCGGGCGCGGCCGCCGCCGGCGACGGCGGCAGCGG
CGGCGCTGAGACGCTGCCGGTGCTGCCATATCCTCGCTCCGGCGGTAGCG
GCGGCAACGGCGGCGGCGGCGGCAGCAGCGGTGGCGGCGGCAACGGCGCC
GCGTTCTGCCTGTACAATGCGGAGACAGGGCTGTACCTGAGCTCCGCCAG
GCACCCGCAGCCGCTGTGCCGGCGCACCGAGCACTGGCGGATCACGCTGT
GGGAATTGTGA
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