mRNA_10573 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170540
Unique NamemRNA_10573
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: A0A836C9E6_9STRA (ATP synthase F0 sector subunit C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E6_9STRA)

HSP 1 Score: 331 bits (848), Expect = 2.000e-114
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1 
Query:    1 MGDEATCVTAAQVGGARVRLGLKSARAEAGTNAEWQPTNGEGRGNPGLLLLRNVRCRTACQARARDGRRVFSSAPTVNGEHTRRGLLQKEVSRPCARRQAAACGRTAAGLAVGLGAIGPGIGQGNAAGQAVGIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 528
            MGDEATCVTAAQVGGARVRLGLKSARAEAGTNAEWQPTNGEGRGNPGLLLLRNVRCRTACQARARDGRRVFSSAPTVNGEHTRRGLLQKEVSRPCARRQAAACGRTAAGLAVGLGAIGPGIGQGNAAGQAVGIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS
Sbjct:    1 MGDEATCVTAAQVGGARVRLGLKSARAEAGTNAEWQPTNGEGRGNPGLLLLRNVRCRTACQARARDGRRVFSSAPTVNGEHTRRGLLQKEVSRPCARRQAAACGRTAAGLAVGLGAIGPGIGQGNAAGQAVGIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 176
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BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: A0A5B9RIB4_9CHLO (ATP synthase subunit c, chloroplastic n=1 Tax=Microrhizoidea pickettheapsiorum TaxID=2604950 RepID=A0A5B9RIB4_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 6.320e-30
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:  322 AGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 528
            AGLA+GLGAIGPGIGQGNAAGQAV GIARQPEAE KIRGTLLLSLAFMEALTIYGLVVAL+LLFANPF S
Sbjct:   13 AGLAIGLGAIGPGIGQGNAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFVS 82
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BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: K9ZV94_9STRA (ATP synthase subunit c, chloroplastic n=18 Tax=Eustigmatophyceae TaxID=5747 RepID=K9ZV94_9STRA)

HSP 1 Score: 113 bits (283), Expect = 9.210e-30
Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:  319 AAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 528
            AAG+AVGL AIGPGIGQGNAAGQAV GIARQPEAE+KIRGTLLLSLAFMEALTIYGLVVALSL+FANPF+S
Sbjct:   13 AAGIAVGLAAIGPGIGQGNAAGQAVEGIARQPEAEDKIRGTLLLSLAFMEALTIYGLVVALSLIFANPFSS 83
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BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: H2EV64_9STRA (ATP synthase subunit c, chloroplastic n=1 Tax=Ulnaria acus TaxID=1436140 RepID=H2EV64_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.610e-29
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:  319 AAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 528
            AAGL++GL AIGPGIGQGNAAGQAV GIARQPEAE+KIRGTLLLSLAFMEALTIYGLVVAL+LLFANPF S
Sbjct:   12 AAGLSIGLSAIGPGIGQGNAAGQAVEGIARQPEAESKIRGTLLLSLAFMEALTIYGLVVALALLFANPFNS 82
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BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: ATPH_OSTTA (ATP synthase subunit c, chloroplastic n=35 Tax=cellular organisms TaxID=131567 RepID=ATPH_OSTTA)

HSP 1 Score: 110 bits (276), Expect = 1.020e-28
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:  322 AGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 528
            AGLA+GLGAIGPGIGQG AAGQAV GIARQPEAE KIRGTLLLSLAFMEALTIYGLVVAL+L+FANPF S
Sbjct:   13 AGLAIGLGAIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALMFANPFVS 82
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BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: ATPH_DIALT (ATP synthase subunit c, chloroplastic n=8 Tax=Eukaryota TaxID=2759 RepID=ATPH_DIALT)

HSP 1 Score: 110 bits (276), Expect = 1.050e-28
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:  319 AAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 528
            AAGL+VGL AIGPGIGQG+AAGQA+ GIARQPEAE KIRGTLLLSLAFMEALTIYGLVVALSLLFANPFT+
Sbjct:   12 AAGLSVGLAAIGPGIGQGSAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTA 82
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BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: ATPL_TRIEI (ATP synthase subunit c n=50 Tax=Cyanobacteria TaxID=1117 RepID=ATPL_TRIEI)

HSP 1 Score: 110 bits (274), Expect = 2.000e-28
Identity = 66/75 (88.00%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:  301 AACGRTAAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPF 522
            AA    AA LAVGLGAIGPGIGQGNAAGQAV GIARQPEAE KIRGTLLLSLAFMEALTIYGLVV+L LLFANPF
Sbjct:    6 AAASVVAAALAVGLGAIGPGIGQGNAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVSLVLLFANPF 80
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BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: D8G4T8_9CYAN (ATP synthase subunit c n=4 Tax=Cyanobacteria TaxID=1117 RepID=D8G4T8_9CYAN)

HSP 1 Score: 110 bits (274), Expect = 2.000e-28
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  301 AACGRTAAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPF 522
            AA    AAGLA+GLGAIGPGIGQGNA+GQAV GIARQPEAE KIRGTLLLSLAFME+LTIYGLV+AL LLFANPF
Sbjct:    6 AAASVIAAGLAIGLGAIGPGIGQGNASGQAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVIALVLLFANPF 80
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BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: A0A2W4ZCU0_9CYAN (ATP synthase subunit c n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2W4ZCU0_9CYAN)

HSP 1 Score: 109 bits (273), Expect = 2.830e-28
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:  319 AAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFT 525
            AAGLA+G+G IGPGIGQG AAGQAV GIARQPEAE KIRGTLLLSLAFMEALTIYGLVVAL LLFANPFT
Sbjct:   12 AAGLAIGIGTIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFT 81
[Close]
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: A0A2U9NTC3_9STRA (ATP synthase subunit c, chloroplastic n=1 Tax=Astrosyne radiata TaxID=1158023 RepID=A0A2U9NTC3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.910e-28
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:  301 AACGRTAAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 528
            AA    +AGLA+GLG+IGPGIGQGNAAGQAV GIARQPE E+KIRGTLL+SLAFMEALTIYGLV+AL+LLFANPF +
Sbjct:    6 AAASVISAGLAIGLGSIGPGIGQGNAAGQAVDGIARQPEVESKIRGTLLISLAFMEALTIYGLVIALALLFANPFNN 82
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9E6_9STRA2.000e-114100.00ATP synthase F0 sector subunit C n=1 Tax=Tribonema... [more]
A0A5B9RIB4_9CHLO6.320e-3092.86ATP synthase subunit c, chloroplastic n=1 Tax=Micr... [more]
K9ZV94_9STRA9.210e-3091.55ATP synthase subunit c, chloroplastic n=18 Tax=Eus... [more]
H2EV64_9STRA3.610e-2990.14ATP synthase subunit c, chloroplastic n=1 Tax=Ulna... [more]
ATPH_OSTTA1.020e-2890.00ATP synthase subunit c, chloroplastic n=35 Tax=cel... [more]
ATPH_DIALT1.050e-2890.14ATP synthase subunit c, chloroplastic n=8 Tax=Euka... [more]
ATPL_TRIEI2.000e-2888.00ATP synthase subunit c n=50 Tax=Cyanobacteria TaxI... [more]
D8G4T8_9CYAN2.000e-2885.33ATP synthase subunit c n=4 Tax=Cyanobacteria TaxID... [more]
A0A2W4ZCU0_9CYAN2.830e-2890.00ATP synthase subunit c n=2 Tax=Cyanobacteria TaxID... [more]
A0A2U9NTC3_9STRA2.910e-2880.52ATP synthase subunit c, chloroplastic n=1 Tax=Astr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:557930..558460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170540|e_gw1.74.76.1
KEGG TC3.A.2.1
BRITEko00000,ko00001,ko00002,ko00194
KEGG ModuleM00157
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG koko:K02110
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
Preferred nameatpH
DescriptionF(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
COG categoryC
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0636@1|root,KOG0232@2759|Eukaryota,2XGQC@2836|Bacillariophyta
Evalue3.64e-31
Seed ortholog35128.Thapsdraft1290
Hectar predicted targeting categoryother localisation
TranscriptId170862
TrackFilteredModels1
ProteinId170540
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170540gene_10573Tribonema minus UTEX_B_3156 geneContig_74 557930..558460 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10573_1exon_10573_1Tribonema minus UTEX_B_3156 exonContig_74 557930..558460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10573CDS_10573Tribonema minus UTEX_B_3156 CDSContig_74 557930..558460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170540Trimin1|170540|e_gw1.74.76.1Tribonema minus UTEX_B_3156 polypeptideContig_74 557930..558460 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10573 ID=mRNA_10573|Name=jgi.p|Trimin1|170540|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_74:557930..558460+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGATGAGGCAACCTGTGTCACTGCTGCACAGGTAGGAGGTGCTAG
GGTTAGGTTAGGGTTGAAATCAGCGCGCGCCGAGGCTGGGACGAACGCCG
AGTGGCAGCCTACGAACGGCGAGGGACGCGGAAACCCTGGGTTGCTGCTG
CTGCGCAATGTGAGGTGCCGCACCGCCTGTCAGGCGCGCGCTCGGGATGG
CCGACGCGTTTTCAGCTCTGCGCCTACAGTGAACGGTGAACACACCCGGA
GGGGTCTGCTGCAGAAAGAGGTTAGCAGACCTTGCGCACGCCGCCAGGCT
GCGGCATGCGGGCGAACGGCGGCTGGTCTTGCTGTTGGTTTAGGTGCAAT
TGGTCCTGGTATTGGTCAAGGAAATGCCGCTGGTCAAGCTGTAGGTATTG
CTCGTCAACCTGAAGCAGAAAATAAAATTCGTGGTACTCTATTATTAAGT
TTAGCTTTCATGGAAGCTTTAACAATTTATGGTTTAGTAGTAGCTTTATC
GTTATTATTCGCTAACCCGTTCACAAGCTAA
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protein sequence of jgi.p|Trimin1|170540

>Trimin1|170540|e_gw1.74.76.1 ID=Trimin1|170540|e_gw1.74.76.1|Name=jgi.p|Trimin1|170540|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp
MGDEATCVTAAQVGGARVRLGLKSARAEAGTNAEWQPTNGEGRGNPGLLL
LRNVRCRTACQARARDGRRVFSSAPTVNGEHTRRGLLQKEVSRPCARRQA
AACGRTAAGLAVGLGAIGPGIGQGNAAGQAVGIARQPEAENKIRGTLLLS
LAFMEALTIYGLVVALSLLFANPFTS*
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mRNA from alignment at Contig_74:557930..558460+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10573 ID=mRNA_10573|Name=jgi.p|Trimin1|170540|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_74:557930..558460+ (Tribonema minus UTEX_B_3156 )
ATGGGTGATGAGGCAACCTGTGTCACTGCTGCACAGGTAGGAGGTGCTAG
GGTTAGGTTAGGGTTGAAATCAGCGCGCGCCGAGGCTGGGACGAACGCCG
AGTGGCAGCCTACGAACGGCGAGGGACGCGGAAACCCTGGGTTGCTGCTG
CTGCGCAATGTGAGGTGCCGCACCGCCTGTCAGGCGCGCGCTCGGGATGG
CCGACGCGTTTTCAGCTCTGCGCCTACAGTGAACGGTGAACACACCCGGA
GGGGTCTGCTGCAGAAAGAGGTTAGCAGACCTTGCGCACGCCGCCAGGCT
GCGGCATGCGGGCGAACGGCGGCTGGTCTTGCTGTTGGTTTAGGTGCAAT
TGGTCCTGGTATTGGTCAAGGAAATGCCGCTGGTCAAGCTGTAGGTATTG
CTCGTCAACCTGAAGCAGAAAATAAAATTCGTGGTACTCTATTATTAAGT
TTAGCTTTCATGGAAGCTTTAACAATTTATGGTTTAGTAGTAGCTTTATC
GTTATTATTCGCTAACCCGTTCACAAGCTAA
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Coding sequence (CDS) from alignment at Contig_74:557930..558460+

>mRNA_10573 ID=mRNA_10573|Name=jgi.p|Trimin1|170540|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_74:557930..558460+ (Tribonema minus UTEX_B_3156 )
ATGGGTGATGAGGCAACCTGTGTCACTGCTGCACAGGTAGGAGGTGCTAG
GGTTAGGTTAGGGTTGAAATCAGCGCGCGCCGAGGCTGGGACGAACGCCG
AGTGGCAGCCTACGAACGGCGAGGGACGCGGAAACCCTGGGTTGCTGCTG
CTGCGCAATGTGAGGTGCCGCACCGCCTGTCAGGCGCGCGCTCGGGATGG
CCGACGCGTTTTCAGCTCTGCGCCTACAGTGAACGGTGAACACACCCGGA
GGGGTCTGCTGCAGAAAGAGGTTAGCAGACCTTGCGCACGCCGCCAGGCT
GCGGCATGCGGGCGAACGGCGGCTGGTCTTGCTGTTGGTTTAGGTGCAAT
TGGTCCTGGTATTGGTCAAGGAAATGCCGCTGGTCAAGCTGTAGGTATTG
CTCGTCAACCTGAAGCAGAAAATAAAATTCGTGGTACTCTATTATTAAGT
TTAGCTTTCATGGAAGCTTTAACAATTTATGGTTTAGTAGTAGCTTTATC
GTTATTATTCGCTAACCCGTTCACAAGCTAA
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