mRNA_10563 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170553
Unique NamemRNA_10563
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A835YUZ0_9STRA (DUF908 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ0_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 3.710e-143
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
Query:    1 MRVRTGPALGNADACWSANLAALKDAIATTPEGEEGDAALVDLLSNGANQDLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT 648
            MRVRTGPALGNADACWSANLAALKDAIATTPEGEEGDAALVDLLSNGANQDLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT
Sbjct:    1 MRVRTGPALGNADACWSANLAALKDAIATTPEGEEGDAALVDLLSNGANQDLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT 216          
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: D7G2U4_ECTSI (DUF908 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U4_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.250e-22
Identity = 71/192 (36.98%), Postives = 98/192 (51.04%), Query Frame = 1
Query:  109 DAALVDLLSNGANQDLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEA------------APAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT 648
            DA L+  L     +D +E+QP+L +W  VLDR+D  LE+++   P+L+LI+ A                                        CL F AVL+++  NK ++SS EHL +LLAA DD   E ALRCL  + +P  LHR  + ++      S    K  + +L  LS GWGGRGQGLGLL+CVT
Sbjct:   36 DAELIAALKLVKGEDEWEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCLNFLAVLMRSCVNKHVFSSAEHLRSLLAAGDDAVAESALRCLMLLTVPPLLHRHQQPELHS--MCSIHKDKAVSAELMTLSGGWGGRGQGLGLLACVT 225          
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A5J4XUS0_9CHLO (UBA domain-containing protein (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XUS0_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 5.040e-9
Identity = 55/160 (34.38%), Postives = 78/160 (48.75%), Query Frame = 1
Query:  163 DQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSC 642
            D+ +   W+P+ +  DA  E  ++  P L L  E+A           EG +   P R   V+A L+ T  +L+N +NK +YSS EHL  LLAA D G V   L+   A+      H  S      P+Q +         +L  L+QGWGG+ QGLGL+ C
Sbjct:   42 DKGDFHHWVPLFNFFDAYFEKHVQSRPDLQLKSESAKT---------EGEL---PSRT--VIAVLKVTGSILENCSNKHLYSSCEHLTTLLAASDQGVVTATLQAFVALVRKT--HIASIRYPGGPEQNA---------RLLALAQGWGGKEQGLGLVEC 176          
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A388KNL3_CHABU (HECT-type E3 ubiquitin transferase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KNL3_CHABU)

HSP 1 Score: 62.0 bits (149), Expect = 1.460e-7
Identity = 53/159 (33.33%), Postives = 75/159 (47.17%), Query Frame = 1
Query:  172 NLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVV--VAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSC 642
            ++  W+ +L   DA  E  ++  P L L                EG +  V+ P     VL  LR T ++L+N + K +  S EH+  LLA+ D   V  AL+ LAA+      H   RG  +P   F   D      +L  L+QGWGG+ +GLGLLSC
Sbjct:   50 DINHWLDLLSHFDAYFERHVKPRPDLRL----------------EGALEEVSEPFPKEAVLQILRVTTIILENCSFKEVSLSYEHVTLLLASVDADVVIAALQMLAALVRKKPSHHVLRGPRVP---FGDGDLHA---RLFSLTQGWGGKEEGLGLLSC 186          
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A2R6WHI5_MARPO (HECT-type E3 ubiquitin transferase n=3 Tax=Embryophyta TaxID=3193 RepID=A0A2R6WHI5_MARPO)

HSP 1 Score: 58.9 bits (141), Expect = 1.600e-6
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  343 VLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAA-MEMPAALHRQSR--GDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSC 642
            VL  LR T ++L+N  NK +Y+S EH+ AL A+ D   V  AL  LAA ++ P   +R  R  GD       ++L+A+     L  LSQGWGG+ +GLGLL+C
Sbjct:   88 VLQILRVTRIVLENCMNKFLYNSNEHVSALFASTDPEIVIAALETLAAFVKKPVQSNRAMRWHGD-------AALNAR-----LFSLSQGWGGKEEGLGLLAC 178          
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A1Y1IRP5_KLENI (HECT-type E3 ubiquitin transferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRP5_KLENI)

HSP 1 Score: 58.2 bits (139), Expect = 2.910e-6
Identity = 54/163 (33.13%), Postives = 72/163 (44.17%), Query Frame = 1
Query:  163 DQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAM-EMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT 648
            D+ +L  W+ +L+  DA  E  L     L L               G       P     +L  LR TAV+L+NS NK +Y S EHL  LL   D   V   L+ L A+   P    R SR    P     +L+ +     L  L QGWGG+ +GLGLL+ +T
Sbjct:   42 DKGDLNHWVDLLNFFDAYFEKHLPESVKLQL--------------DGTLKQEQHPVSKDTLLQILRVTAVILENSYNKQLYGSVEHLTLLLGHEDTDVVIATLKALLALVRKPMTSGRSSRSYSNP-----ALNVR-----LLSLCQGWGGKEEGLGLLASIT 180          
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A2K1JW78_PHYPA (HECT-type E3 ubiquitin transferase n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JW78_PHYPA)

HSP 1 Score: 57.8 bits (138), Expect = 3.930e-6
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  322 GPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAA-MEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSC 642
            GP     VL  LR T ++L+N  NK +Y+S EH+  L A+ D   V  AL+ LAA ++ P   +R  R      Q  ++L+A      L  LSQGWGG+ +GLGLL+C
Sbjct:   81 GPFPKEAVLQVLRVTRIILENCVNKYLYNSNEHVSLLFASTDPDIVIAALQTLAASVKKPVQSNRTLRW-----QGDATLNAC-----LFSLSQGWGGKEEGLGLLAC 178          
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: R0GT08_9BRAS (HECT-type E3 ubiquitin transferase n=3 Tax=Camelineae TaxID=980083 RepID=R0GT08_9BRAS)

HSP 1 Score: 57.8 bits (138), Expect = 3.930e-6
Identity = 46/103 (44.66%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  343 VLACLRFTAVLLQNSTNKAIYSSTE-HLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT 648
            VL  LR   V+++N TNK  YSS E HL  LLA+ D   VE  L+ LAA      L RQ         ++S  DA     KL  L+QGWGG+ +GLGL+SC T
Sbjct:  333 VLQVLRVIRVVVENCTNKHFYSSYEQHLSLLLASTDPDVVEACLQTLAAF-----LKRQIG-------KYSIRDAS-LNSKLFSLAQGWGGKEEGLGLMSCAT 422          
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A0D2VPV4_CAPO3 (HECT-type E3 ubiquitin transferase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VPV4_CAPO3)

HSP 1 Score: 57.8 bits (138), Expect = 3.960e-6
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  316 VAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSC 642
            +A P    LVLA LRFT +L+QNSTN+  Y+S EH+  LL   D          +AA+E+  AL +  R  +  P   S +  +    +L  L+  WGG  QGL +L+C
Sbjct:  161 IALPSTRRLVLAILRFTRLLIQNSTNRRKYNSMEHIAMLLGTMDSDIH------IAALELLHALCKHRRLQLQSPSVISLI--RPLTDRLEQLAAAWGGSRQGLSVLNC 261          
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A0P1AZQ2_PLAHL (Hect e3 ubiquitin n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZQ2_PLAHL)

HSP 1 Score: 57.4 bits (137), Expect = 4.740e-6
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  100 EEGDAALVDLLSNGANQDLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDR--APLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHR 513
            + G+A +V LL+      L E Q +L  W PVL ++   L  +L+  P L+LI               +  +    +R    LV   L+F   LL+N++NKA+YSSTE ++ALLAAR++  V  A + +A + +P  +HR
Sbjct:   19 QAGEARIVPLLACIKGWTL-ESQADLANWRPVLSKLHKLLLGALQQCPRLLLISVELEKT--------DFSITMQTEREFTELVYEILKFLGFLLENASNKAVYSSTEPIMALLAARNERVVFEATKVVAMLALPLQVHR 149          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUZ0_9STRA3.710e-143100.00DUF908 domain-containing protein (Fragment) n=1 Ta... [more]
D7G2U4_ECTSI1.250e-2236.98DUF908 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A5J4XUS0_9CHLO5.040e-934.38UBA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A388KNL3_CHABU1.460e-733.33HECT-type E3 ubiquitin transferase n=1 Tax=Chara b... [more]
A0A2R6WHI5_MARPO1.600e-642.72HECT-type E3 ubiquitin transferase n=3 Tax=Embryop... [more]
A0A1Y1IRP5_KLENI2.910e-633.13HECT-type E3 ubiquitin transferase n=1 Tax=Klebsor... [more]
A0A2K1JW78_PHYPA3.930e-640.74HECT-type E3 ubiquitin transferase n=4 Tax=Physcom... [more]
R0GT08_9BRAS3.930e-644.66HECT-type E3 ubiquitin transferase n=3 Tax=Camelin... [more]
A0A0D2VPV4_CAPO33.960e-637.61HECT-type E3 ubiquitin transferase n=1 Tax=Capsasp... [more]
A0A0P1AZQ2_PLAHL4.740e-633.57Hect e3 ubiquitin n=1 Tax=Plasmopara halstedii Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:457551..458198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170553|e_gw1.74.78.1
BRITEko00000,ko00001,ko01000,ko03009,ko03029,ko04121
KEGG Pathwayko04120,map04120
KEGG koko:K10592,ko:K14772,ko:K17964,ko:K22370
EC2.3.2.26
Descriptionubiquitin protein ligase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5021@1|root,KOG0939@2759|Eukaryota
Evalue2.11e-14
Seed ortholog2850.Phatr36043
Hectar predicted targeting categoryother localisation
TranscriptId170875
TrackFilteredModels1
ProteinId170553
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170553gene_10563Tribonema minus UTEX_B_3156 geneContig_74 457551..458198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10563_1exon_10563_1Tribonema minus UTEX_B_3156 exonContig_74 457551..458198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10563CDS_10563Tribonema minus UTEX_B_3156 CDSContig_74 457551..458198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170553Trimin1|170553|e_gw1.74.78.1Tribonema minus UTEX_B_3156 polypeptideContig_74 457551..458198 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10563 ID=mRNA_10563|Name=jgi.p|Trimin1|170553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=648bp|location=Sequence derived from alignment at Contig_74:457551..458198- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGTCCGCACGGGACCAGCTCTCGGCAACGCGGACGCCTGCTGGTC
CGCAAATCTCGCCGCGCTGAAGGATGCCATAGCCACCACGCCGGAGGGCG
AGGAGGGCGATGCTGCGCTCGTTGACCTCCTGTCCAACGGCGCCAATCAG
GATCTCTTCGAGGACCAGCCGAACCTGACGGAGTGGATACCAGTCCTGGA
CAGGATCGACGCGGCGCTCGAATCCTCGCTCCGCCTGGACCCCGCGCTAG
TGCTGATCAAGGAAGCGGCGCCGGCGGCAGCAGCGGGGGCGCCAGCGGGC
GGGGAGGGGGTCGTCGTCGCCGGTCCCGACAGGGCTCCCCTGGTGCTCGC
CTGCCTGCGCTTCACCGCGGTCCTGCTGCAGAACAGCACCAACAAGGCCA
TCTACAGCAGCACGGAGCACCTGCTCGCGCTGCTCGCGGCGCGCGACGAC
GGCGCCGTGGAGCTCGCGTTGCGCTGCCTCGCCGCCATGGAGATGCCGGC
GGCGCTGCACCGCCAGTCGCGCGGCGACATGATGCCGCCGCAGCAGTTCT
CCTCGCTCGACGCCAAGGGCGCCGCCAAGAAGCTCACGATACTCAGCCAG
GGGTGGGGCGGGCGCGGGCAGGGCCTCGGCCTGCTCTCGTGCGTCACG
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protein sequence of jgi.p|Trimin1|170553

>Trimin1|170553|e_gw1.74.78.1 ID=Trimin1|170553|e_gw1.74.78.1|Name=jgi.p|Trimin1|170553|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp
MRVRTGPALGNADACWSANLAALKDAIATTPEGEEGDAALVDLLSNGANQ
DLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAG
GEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDD
GAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQ
GWGGRGQGLGLLSCVT
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mRNA from alignment at Contig_74:457551..458198-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10563 ID=mRNA_10563|Name=jgi.p|Trimin1|170553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=648bp|location=Sequence derived from alignment at Contig_74:457551..458198- (Tribonema minus UTEX_B_3156 )
ATGAGGGTCCGCACGGGACCAGCTCTCGGCAACGCGGACGCCTGCTGGTC CGCAAATCTCGCCGCGCTGAAGGATGCCATAGCCACCACGCCGGAGGGCG AGGAGGGCGATGCTGCGCTCGTTGACCTCCTGTCCAACGGCGCCAATCAG GATCTCTTCGAGGACCAGCCGAACCTGACGGAGTGGATACCAGTCCTGGA CAGGATCGACGCGGCGCTCGAATCCTCGCTCCGCCTGGACCCCGCGCTAG TGCTGATCAAGGAAGCGGCGCCGGCGGCAGCAGCGGGGGCGCCAGCGGGC GGGGAGGGGGTCGTCGTCGCCGGTCCCGACAGGGCTCCCCTGGTGCTCGC CTGCCTGCGCTTCACCGCGGTCCTGCTGCAGAACAGCACCAACAAGGCCA TCTACAGCAGCACGGAGCACCTGCTCGCGCTGCTCGCGGCGCGCGACGAC GGCGCCGTGGAGCTCGCGTTGCGCTGCCTCGCCGCCATGGAGATGCCGGC GGCGCTGCACCGCCAGTCGCGCGGCGACATGATGCCGCCGCAGCAGTTCT CCTCGCTCGACGCCAAGGGCGCCGCCAAGAAGCTCACGATACTCAGCCAG GGGTGGGGCGGGCGCGGGCAGGGCCTCGGCCTGCTCTCGTGCGTCACG
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Coding sequence (CDS) from alignment at Contig_74:457551..458198-

>mRNA_10563 ID=mRNA_10563|Name=jgi.p|Trimin1|170553|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_74:457551..458198- (Tribonema minus UTEX_B_3156 )
ATGAGGGTCCGCACGGGACCAGCTCTCGGCAACGCGGACGCCTGCTGGTC
CGCAAATCTCGCCGCGCTGAAGGATGCCATAGCCACCACGCCGGAGGGCG
AGGAGGGCGATGCTGCGCTCGTTGACCTCCTGTCCAACGGCGCCAATCAG
GATCTCTTCGAGGACCAGCCGAACCTGACGGAGTGGATACCAGTCCTGGA
CAGGATCGACGCGGCGCTCGAATCCTCGCTCCGCCTGGACCCCGCGCTAG
TGCTGATCAAGGAAGCGGCGCCGGCGGCAGCAGCGGGGGCGCCAGCGGGC
GGGGAGGGGGTCGTCGTCGCCGGTCCCGACAGGGCTCCCCTGGTGCTCGC
CTGCCTGCGCTTCACCGCGGTCCTGCTGCAGAACAGCACCAACAAGGCCA
TCTACAGCAGCACGGAGCACCTGCTCGCGCTGCTCGCGGCGCGCGACGAC
GGCGCCGTGGAGCTCGCGTTGCGCTGCCTCGCCGCCATGGAGATGCCGGC
GGCGCTGCACCGCCAGTCGCGCGGCGACATGATGCCGCCGCAGCAGTTCT
CCTCGCTCGACGCCAAGGGCGCCGCCAAGAAGCTCACGATACTCAGCCAG
GGGTGGGGCGGGCGCGGGCAGGGCCTCGGCCTGCTCTCGTGCGTCACG
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