mRNA_10563 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A835YUZ0_9STRA (DUF908 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ0_9STRA) HSP 1 Score: 407 bits (1045), Expect = 3.710e-143 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1 Query: 1 MRVRTGPALGNADACWSANLAALKDAIATTPEGEEGDAALVDLLSNGANQDLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT 648 MRVRTGPALGNADACWSANLAALKDAIATTPEGEEGDAALVDLLSNGANQDLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT Sbjct: 1 MRVRTGPALGNADACWSANLAALKDAIATTPEGEEGDAALVDLLSNGANQDLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT 216
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: D7G2U4_ECTSI (DUF908 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U4_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.250e-22 Identity = 71/192 (36.98%), Postives = 98/192 (51.04%), Query Frame = 1 Query: 109 DAALVDLLSNGANQDLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEA------------APAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT 648 DA L+ L +D +E+QP+L +W VLDR+D LE+++ P+L+LI+ A CL F AVL+++ NK ++SS EHL +LLAA DD E ALRCL + +P LHR + ++ S K + +L LS GWGGRGQGLGLL+CVT Sbjct: 36 DAELIAALKLVKGEDEWEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCLNFLAVLMRSCVNKHVFSSAEHLRSLLAAGDDAVAESALRCLMLLTVPPLLHRHQQPELHS--MCSIHKDKAVSAELMTLSGGWGGRGQGLGLLACVT 225
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A5J4XUS0_9CHLO (UBA domain-containing protein (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XUS0_9CHLO) HSP 1 Score: 66.2 bits (160), Expect = 5.040e-9 Identity = 55/160 (34.38%), Postives = 78/160 (48.75%), Query Frame = 1 Query: 163 DQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSC 642 D+ + W+P+ + DA E ++ P L L E+A EG + P R V+A L+ T +L+N +NK +YSS EHL LLAA D G V L+ A+ H S P+Q + +L L+QGWGG+ QGLGL+ C Sbjct: 42 DKGDFHHWVPLFNFFDAYFEKHVQSRPDLQLKSESAKT---------EGEL---PSRT--VIAVLKVTGSILENCSNKHLYSSCEHLTTLLAASDQGVVTATLQAFVALVRKT--HIASIRYPGGPEQNA---------RLLALAQGWGGKEQGLGLVEC 176
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A388KNL3_CHABU (HECT-type E3 ubiquitin transferase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KNL3_CHABU) HSP 1 Score: 62.0 bits (149), Expect = 1.460e-7 Identity = 53/159 (33.33%), Postives = 75/159 (47.17%), Query Frame = 1 Query: 172 NLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVV--VAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSC 642 ++ W+ +L DA E ++ P L L EG + V+ P VL LR T ++L+N + K + S EH+ LLA+ D V AL+ LAA+ H RG +P F D +L L+QGWGG+ +GLGLLSC Sbjct: 50 DINHWLDLLSHFDAYFERHVKPRPDLRL----------------EGALEEVSEPFPKEAVLQILRVTTIILENCSFKEVSLSYEHVTLLLASVDADVVIAALQMLAALVRKKPSHHVLRGPRVP---FGDGDLHA---RLFSLTQGWGGKEEGLGLLSC 186
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A2R6WHI5_MARPO (HECT-type E3 ubiquitin transferase n=3 Tax=Embryophyta TaxID=3193 RepID=A0A2R6WHI5_MARPO) HSP 1 Score: 58.9 bits (141), Expect = 1.600e-6 Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 343 VLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAA-MEMPAALHRQSR--GDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSC 642 VL LR T ++L+N NK +Y+S EH+ AL A+ D V AL LAA ++ P +R R GD ++L+A+ L LSQGWGG+ +GLGLL+C Sbjct: 88 VLQILRVTRIVLENCMNKFLYNSNEHVSALFASTDPEIVIAALETLAAFVKKPVQSNRAMRWHGD-------AALNAR-----LFSLSQGWGGKEEGLGLLAC 178
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A1Y1IRP5_KLENI (HECT-type E3 ubiquitin transferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRP5_KLENI) HSP 1 Score: 58.2 bits (139), Expect = 2.910e-6 Identity = 54/163 (33.13%), Postives = 72/163 (44.17%), Query Frame = 1 Query: 163 DQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAM-EMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT 648 D+ +L W+ +L+ DA E L L L G P +L LR TAV+L+NS NK +Y S EHL LL D V L+ L A+ P R SR P +L+ + L L QGWGG+ +GLGLL+ +T Sbjct: 42 DKGDLNHWVDLLNFFDAYFEKHLPESVKLQL--------------DGTLKQEQHPVSKDTLLQILRVTAVILENSYNKQLYGSVEHLTLLLGHEDTDVVIATLKALLALVRKPMTSGRSSRSYSNP-----ALNVR-----LLSLCQGWGGKEEGLGLLASIT 180
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A2K1JW78_PHYPA (HECT-type E3 ubiquitin transferase n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JW78_PHYPA) HSP 1 Score: 57.8 bits (138), Expect = 3.930e-6 Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 1 Query: 322 GPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAA-MEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSC 642 GP VL LR T ++L+N NK +Y+S EH+ L A+ D V AL+ LAA ++ P +R R Q ++L+A L LSQGWGG+ +GLGLL+C Sbjct: 81 GPFPKEAVLQVLRVTRIILENCVNKYLYNSNEHVSLLFASTDPDIVIAALQTLAASVKKPVQSNRTLRW-----QGDATLNAC-----LFSLSQGWGGKEEGLGLLAC 178
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: R0GT08_9BRAS (HECT-type E3 ubiquitin transferase n=3 Tax=Camelineae TaxID=980083 RepID=R0GT08_9BRAS) HSP 1 Score: 57.8 bits (138), Expect = 3.930e-6 Identity = 46/103 (44.66%), Postives = 57/103 (55.34%), Query Frame = 1 Query: 343 VLACLRFTAVLLQNSTNKAIYSSTE-HLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSCVT 648 VL LR V+++N TNK YSS E HL LLA+ D VE L+ LAA L RQ ++S DA KL L+QGWGG+ +GLGL+SC T Sbjct: 333 VLQVLRVIRVVVENCTNKHFYSSYEQHLSLLLASTDPDVVEACLQTLAAF-----LKRQIG-------KYSIRDAS-LNSKLFSLAQGWGGKEEGLGLMSCAT 422
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A0D2VPV4_CAPO3 (HECT-type E3 ubiquitin transferase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VPV4_CAPO3) HSP 1 Score: 57.8 bits (138), Expect = 3.960e-6 Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1 Query: 316 VAGPDRAPLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHRQSRGDMMPPQQFSSLDAKGAAKKLTILSQGWGGRGQGLGLLSC 642 +A P LVLA LRFT +L+QNSTN+ Y+S EH+ LL D +AA+E+ AL + R + P S + + +L L+ WGG QGL +L+C Sbjct: 161 IALPSTRRLVLAILRFTRLLIQNSTNRRKYNSMEHIAMLLGTMDSDIH------IAALELLHALCKHRRLQLQSPSVISLI--RPLTDRLEQLAAAWGGSRQGLSVLNC 261
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Match: A0A0P1AZQ2_PLAHL (Hect e3 ubiquitin n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZQ2_PLAHL) HSP 1 Score: 57.4 bits (137), Expect = 4.740e-6 Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 1 Query: 100 EEGDAALVDLLSNGANQDLFEDQPNLTEWIPVLDRIDAALESSLRLDPALVLIKEAAPAAAAGAPAGGEGVVVAGPDR--APLVLACLRFTAVLLQNSTNKAIYSSTEHLLALLAARDDGAVELALRCLAAMEMPAALHR 513 + G+A +V LL+ L E Q +L W PVL ++ L +L+ P L+LI + + +R LV L+F LL+N++NKA+YSSTE ++ALLAAR++ V A + +A + +P +HR Sbjct: 19 QAGEARIVPLLACIKGWTL-ESQADLANWRPVLSKLHKLLLGALQQCPRLLLISVELEKT--------DFSITMQTEREFTELVYEILKFLGFLLENASNKAVYSSTEPIMALLAARNERVVFEATKVVAMLALPLQVHR 149 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170553 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10563 ID=mRNA_10563|Name=jgi.p|Trimin1|170553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=648bp|location=Sequence derived from alignment at Contig_74:457551..458198- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGGGTCCGCACGGGACCAGCTCTCGGCAACGCGGACGCCTGCTGGTCback to top protein sequence of jgi.p|Trimin1|170553 >Trimin1|170553|e_gw1.74.78.1 ID=Trimin1|170553|e_gw1.74.78.1|Name=jgi.p|Trimin1|170553|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp MRVRTGPALGNADACWSANLAALKDAIATTPEGEEGDAALVDLLSNGANQback to top mRNA from alignment at Contig_74:457551..458198- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10563 ID=mRNA_10563|Name=jgi.p|Trimin1|170553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=648bp|location=Sequence derived from alignment at Contig_74:457551..458198- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_74:457551..458198- >mRNA_10563 ID=mRNA_10563|Name=jgi.p|Trimin1|170553|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_74:457551..458198- (Tribonema minus UTEX_B_3156 )back to top |