mRNA_10504 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Match: A0A835YRV7_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV7_9STRA) HSP 1 Score: 226 bits (577), Expect = 8.610e-75 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1
Query: 1 MSYGGGFGQXXXXXXXEPYNSNSARARETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK 372
MSYGGGFGQXXXXXXXEPYNSNSARARETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK
Sbjct: 1 MSYGGGFGQXXXXXXXEPYNSNSARARETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK 124
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Match: D7FPR8_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR8_ECTSI) HSP 1 Score: 127 bits (318), Expect = 2.790e-35 Identity = 62/105 (59.05%), Postives = 83/105 (79.05%), Query Frame = 1
Query: 55 YNSNSARARETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGK 369
Y++ + R +ET N++EM+N+ HI +LS+QVS LK LTIDIG EV SQN L+ GM MFDA GLLGGT+++I TMM +GGS+HMCYLVAFIV TF+ IW+++ +
Sbjct: 20 YSAPTDRIKETNHNIMEMQNNAHIDDLSDQVSRLKHLTIDIGQEVRSQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFMAIWYILKQ 124
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Match: A0A7S2G7S7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7S7_9STRA) HSP 1 Score: 106 bits (264), Expect = 3.990e-27 Identity = 63/121 (52.07%), Postives = 83/121 (68.60%), Query Frame = 1
Query: 10 GGGFGQXXXXXXXEPYNSNSARARETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK 372
GGG XXXXXX + S S R ET R +LE +ND I+ L++Q+ LK L+IDI EV QN +LDGM N M A+GLL T+ K+GTM+K GGSKHM YL+ F+V +F++I+W+M K
Sbjct: 2 GGGXXXXXXXXXGNRWGSASDRVAETNRRLLEQQNDSSINTLADQLGRLKELSIDINEEVADQNRMLDGMGNQMNSASGLLNETLGKLGTMLKSGGSKHMVYLIGFVVFSFIMIYWIMTHK 122
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Match: A0A7S0CDW0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDW0_9STRA) HSP 1 Score: 106 bits (264), Expect = 6.620e-27 Identity = 53/108 (49.07%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 49 EPYNSNSARARETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK 372
+P A ET +N+LE +N+ IS LS+QV+ LKGLTIDIGNEV QN+LLD M + LL G++++IG M+++GGSKHMCY+V+FIV ++W+M K
Sbjct: 32 DPERGGRMSATETNQNILEQQNNDRISELSDQVARLKGLTIDIGNEVREQNSLLDDMGDGFNSTRDLLAGSLRRIGNMLEQGGSKHMCYMVSFIVFVMFFLYWVMSYK 139
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Match: A0A7S2NWZ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWZ0_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.780e-26 Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 1
Query: 82 ETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK 372
ET N++E +N+ I++LSEQV+ LKGLTIDIGNEV QN+LLD M ++ + LL GTM++IGT++ RGG+KHM YLV F+V + ++W+M K
Sbjct: 36 ETNSNIMEQQNNERIADLSEQVARLKGLTIDIGNEVREQNSLLDNMGDNFGNVGDLLNGTMRRIGTLLDRGGAKHMFYLVGFVVAVMVFLYWVMKHK 132
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Match: B7G253_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G253_PHATC) HSP 1 Score: 103 bits (258), Expect = 5.500e-26 Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1
Query: 94 NMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK 372
N+LE +N+ I+ LS+ V+ LKGLTIDIGNEV QN+LLD M + + +L G++++IGTM++ GG KHMCY+VAF V L +WWLM K
Sbjct: 48 NILESQNNDRINELSDHVARLKGLTIDIGNEVREQNSLLDNMGDGFENTRDMLAGSLRRIGTMLESGGMKHMCYMVAFCVFVMLFLWWLMSHK 140
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Match: A0A4D9D9V6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9V6_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.650e-25 Identity = 55/123 (44.72%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 4 SYGGGFGQXXXXXXXEPYNSNSARARETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK 372
+YGGG Q Y++ R RE++RNM E EN+R I +L+ QVSMLK LTIDIG EV SQN LLD M + +GL+G TM+++ M+ S+HM +LVAF+V F+ +++++ K
Sbjct: 24 AYGGGMPQAGPGRQSNYYSTPEDRVRESSRNMFEEENNRRIGDLAGQVSMLKELTIDIGTEVRSQNHLLDDMGSGFLRTDGLMGSTMRRLNKMLTTSSSRHMLWLVAFVVFVFIFVYYIIRHK 146
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Match: A0A7S1ZI29_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZI29_TRICV) HSP 1 Score: 102 bits (255), Expect = 1.650e-25 Identity = 49/99 (49.49%), Postives = 71/99 (71.72%), Query Frame = 1
Query: 76 ARETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK 372
A E N++E +N+ I+ LSE V+ LKGLTIDIGNEV QN+LLD M +S + +L G++K+IGTM+++GG+KHMCY++ F+V ++WLM K
Sbjct: 44 ATEMNANIMEQQNNDRINELSESVARLKGLTIDIGNEVKEQNSLLDNMGDSFGNVGDMLAGSLKRIGTMLEKGGAKHMCYMIGFVVFVMCFLYWLMTYK 142
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Match: A0A7S2UA83_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA83_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.760e-25 Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = 1
Query: 76 ARETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLMGKK 372
A ET N++E +N+ I LSEQV+ LKGLTIDIGNEV QN+LLD M + + LL G++++IGTM++ GG+KHMCY+V F+V + ++W+M K
Sbjct: 86 ASETNANIMEQQNNDRIDELSEQVARLKGLTIDIGNEVKEQNSLLDDMGDGFANTRDLLAGSLRRIGTMLESGGAKHMCYMVGFVVFVMVFLYWVMTHK 184
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Match: A0A1Z5KR69_FISSO (Blocked early in transport 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR69_FISSO) HSP 1 Score: 102 bits (253), Expect = 2.650e-25 Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 1
Query: 7 YGGGFGQXXXXXXXEPYNSNSARARETARNMLEMENDRHISNLSEQVSMLKGLTIDIGNEVNSQNTLLDGMSNSMFDANGLLGGTMKKIGTMMKRGGSKHMCYLVAFIVLTFLVIWWLM 363
Y GG+G N N +R+T +LE +N+ I+ LSE V+ LKGLTIDIG+EV QN+LLDGM++ + LL ++ +IGTM++ GG+KHMCYLV F V + +WWLM
Sbjct: 19 YKGGYGDIEGGRRG---NRNGFSSRDTNTGILEQQNNERINELSEHVARLKGLTIDIGDEVRQQNSLLDGMNDGFQNTRDLLQSSLMRIGTMLESGGAKHMCYLVGFSVFVMVFLWWLM 134 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167241 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10504 ID=mRNA_10504|Name=jgi.p|Trimin1|167241|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_49:878883..880859- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCTACGGAGGAGGCTTTGGTCAAGGCGGTGGCTATGGAGGGGGGGAback to top protein sequence of jgi.p|Trimin1|167241 >Trimin1|167241|e_gw1.49.95.1 ID=Trimin1|167241|e_gw1.49.95.1|Name=jgi.p|Trimin1|167241|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp MSYGGGFGQGGGYGGGEPYNSNSARARETARNMLEMENDRHISNLSEQVSback to top mRNA from alignment at Contig_49:878883..880859- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10504 ID=mRNA_10504|Name=jgi.p|Trimin1|167241|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1977bp|location=Sequence derived from alignment at Contig_49:878883..880859- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_49:878883..880859- >mRNA_10504 ID=mRNA_10504|Name=jgi.p|Trimin1|167241|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_49:878883..880859- (Tribonema minus UTEX_B_3156 )back to top |