mRNA_10499 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|145651
Unique Name	mRNA_10499
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|145651 vs. uniprot
Match: A0A836CBU9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.080e-15
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:    1 SKKCDACGLKIPSFGTEDSSPTHCGNCKTSDMRSVCK 111
            SKKCDACGLKIPSFGTEDSSPTHCGNCKTSDMRSVCK
Sbjct:    1 SKKCDACGLKIPSFGTEDSSPTHCGNCKTSDMRSVCK 37

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|145651 vs. uniprot

BLAST of jgi.p|Trimin1|145651 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CBU9_9STRA	2.080e-15	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_49	contig	Contig_49:835527..836884 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|145651\|gw1.49.83.1
Hectar predicted targeting category	other localisation
TranscriptId	145973
Track	FilteredModels1
ProteinId	145651

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|145651	gene_10499	Tribonema minus UTEX_B_3156	gene	Contig_49 835527..836884 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10499_1	exon_10499_1	Tribonema minus UTEX_B_3156	exon	Contig_49 835527..835985 +
exon_10499_2	exon_10499_2	Tribonema minus UTEX_B_3156	exon	Contig_49 836339..836576 +
exon_10499_3	exon_10499_3	Tribonema minus UTEX_B_3156	exon	Contig_49 836772..836884 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10499	CDS_10499	Tribonema minus UTEX_B_3156	CDS	Contig_49 835527..835985 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|145651	Trimin1\|145651\|gw1.49.83.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_49 835527..836884 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_49:835527..836884+
coding sequence from alignment at Contig_49:835527..836884+

spliced messenger RNA

>mRNA_10499 ID=mRNA_10499|Name=jgi.p|Trimin1|145651|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_49:835527..836884+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCCAAGAAGTGCGATGCGTGTGGACTGAAGATACCCAGCTTTGGGACAGA
GGACAGCAGCCCCACCCACTGTGGTAACTGCAAGACGTCAGACATGCGAT
CTGTCTGCAAGAAGTGCGAACAGTGTCGGCTGAAGATACCCAACTTTGGG
GTGGAGGACGGCAGACCGACCCACTGCGGCGACTGCAAGACGCCACACAT
GCGAGATGTTAAAAACAAGAAGTGCGAACAGTGTGGGCTCAAACAACCCA
ACTTCGGAGTGGAGGACGGCAGTGCCACTCATTGCGGTGACTGCAAGACG
GCAGACATGCAGGATGTTCGCAGCAAGAAGTGCGAACAGTGTGGGCTAAG
AAGACCCAGCTTTGGCACGGAGGACGGCAGCCCCACCCACTGTGGCGACT
GCAAGACGCCACACATGCGAAATGTTCACAGCAAGAAGTGCGATAAGTGC
ACTGCATCACACCCCAGCTTTGGGGTGGAGCACGGCAGGCCCACCCACTG
TGGCGATTGCAAGACGGCTGACATGCGAGATGTCAAGACAATCAAGTGCG
AACAGTGTGGACTGAAAAGACCCAACTTTGGGATGGAGGACGGCAGCCCC
ACCCATTGCGGTGACTGCAGTACGGCAGGCATGCGAGATGTCAGGACAAA
AAAGTGCGAAGAGTGTGGGCTGAAAATACCCAGCTTTGGGGTGGAGGAGG
AGGATGGCCGCCCCACCCATTGCGGTGACTGCAAGACGTCCGACATGCGA
AATGTTGTCAGCAAATCGTGCAAACAATGTGGGCTGAAGATACCCAGCTT
TGGGGTGAGG

protein sequence of jgi.p|Trimin1|145651

>Trimin1|145651|gw1.49.83.1 ID=Trimin1|145651|gw1.49.83.1|Name=jgi.p|Trimin1|145651|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
SKKCDACGLKIPSFGTEDSSPTHCGNCKTSDMRSVCKKCEQCRLKIPNFG
VEDGRPTHCGDCKTPHMRDVKNKKCEQCGLKQPNFGVEDGSATHCGDCKT
ADMQDVRSKKCEQCGLRRPSFGTEDGSPTHCGDCKTPHMRNVHSKKCDKC
TASHPSFGVEHGRPTHCGDCKTADMRDVKTIKCEQCGLKRPNFGMEDGSP
THCGDCSTAGMRDVRTKKCEECGLKIPSFGVEEEDGRPTHCGDCKTSDMR
NVVSKSCKQCGLKIPSFGVR

mRNA from alignment at Contig_49:835527..836884+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10499 ID=mRNA_10499|Name=jgi.p|Trimin1|145651|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1358bp|location=Sequence derived from alignment at Contig_49:835527..836884+ (Tribonema minus UTEX_B_3156 )
TCCAAGAAGTGCGATGCGTGTGGACTGAAGATACCCAGCTTTGGGACAGA
GGACAGCAGCCCCACCCACTGTGGTAACTGCAAGACGTCAGACATGCGAT
CTGTCTGCAAGAAGTGCGAACAGTGTCGGCTGAAGATACCCAACTTTGGG
GTGGAGGACGGCAGACCGACCCACTGCGGCGACTGCAAGACGCCACACAT
GCGAGATGTTAAAAACAAGAAGTGCGAACAGTGTGGGCTCAAACAACCCA
ACTTCGGAGTGGAGGACGGCAGTGCCACTCATTGCGGTGACTGCAAGACG
GCAGACATGCAGGATGTTCGCAGCAAGAAGTGCGAACAGTGTGGGCTAAG
AAGACCCAGCTTTGGCACGGAGGACGGCAGCCCCACCCACTGTGGCGACT
GCAAGACGCCACACATGCGAAATGTTCACAGCAAGAAGTGCGATAAGTGC
ACTGCATCAGTGCATCAGCCGCTGATCTATGACATCCGTGATCGCCCCCC
CCCCCCCCCCCCCCCCCCGCGTGCGCCATGCCGCGCACGGCCGCCAATGC
AGAGCATTGGTTCAAAGCCGACTCATAACACGTCAGTGCCCCACCCGCTG
ATCGCTGAGTTGCGTACGTGCACCGCCCCCCCACCCCCCCCCTCTCCCCC
ATCCTGTGCAGAGGCCTCACGTGCATCACTGCTGCAATGCCCATTCTGCG
CAAGTCACCACCGCATCAGTGCCTAGCGCAGAGTTGTCAACTTGACAGAC
TCCCGCATTCCCTCCCCCCCCCCCCCCCCCCCCTTTTTCACCTGCCGTGC
AGGGCCCTGAAGCACCCCAGCTTTGGGGTGGAGCACGGCAGGCCCACCCA
CTGTGGCGATTGCAAGACGGCTGACATGCGAGATGTCAAGACAATCAAGT
GCGAACAGTGTGGACTGAAAAGACCCAACTTTGGGATGGAGGACGGCAGC
CCCACCCATTGCGGTGACTGCAGTACGGCAGGCATGCGAGATGTCAGGAC
AAAAAAGTGCGAAGAGTGTGGGCTGAAAATACCCAGCTTTGGGGTGGAGG
GTAGCCCGACTCACTGCAGCGACGTCAGACATGCAAGATGTTCACAGGAA
ATGTGAGGGGGCGGTCTCAAACGAGCCAGCTGCGGGGTGGAGGACGGCAG
GCCTACCCGCTGCGGCGACTGCAAGACGTCAGACATGCGAAATGTTGTCA
GCAAAAAGTGCGAGCAGTGTAGGCTCAAATGAGCCAGCTTTGGAGAGGAG
GATGGCCGCCCCACCCATTGCGGTGACTGCAAGACGTCCGACATGCGAAA
TGTTGTCAGCAAATCGTGCAAACAATGTGGGCTGAAGATACCCAGCTTTG
GGGTGAGG

Coding sequence (CDS) from alignment at Contig_49:835527..836884+

>mRNA_10499 ID=mRNA_10499|Name=jgi.p|Trimin1|145651|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_49:835527..836884+ (Tribonema minus UTEX_B_3156 )
TCCAAGAAGTGCGATGCGTGTGGACTGAAGATACCCAGCTTTGGGACAGA
GGACAGCAGCCCCACCCACTGTGGTAACTGCAAGACGTCAGACATGCGAT
CTGTCTGCAAGAAGTGCGAACAGTGTCGGCTGAAGATACCCAACTTTGGG
GTGGAGGACGGCAGACCGACCCACTGCGGCGACTGCAAGACGCCACACAT
GCGAGATGTTAAAAACAAGAAGTGCGAACAGTGTGGGCTCAAACAACCCA
ACTTCGGAGTGGAGGACGGCAGTGCCACTCATTGCGGTGACTGCAAGACG
GCAGACATGCAGGATGTTCGCAGCAAGAAGTGCGAACAGTGTGGGCTAAG
AAGACCCAGCTTTGGCACGGAGGACGGCAGCCCCACCCACTGTGGCGACT
GCAAGACGCCACACATGCGAAATGTTCACAGCAAGAAGTGCGATAAGTGC
ACTGCATCACACCCCAGCTTTGGGGTGGAGCACGGCAGGCCCACCCACTG
TGGCGATTGCAAGACGGCTGACATGCGAGATGTCAAGACAATCAAGTGCG
AACAGTGTGGACTGAAAAGACCCAACTTTGGGATGGAGGACGGCAGCCCC
ACCCATTGCGGTGACTGCAGTACGGCAGGCATGCGAGATGTCAGGACAAA
AAAGTGCGAAGAGTGTGGGCTGAAAATACCCAGCTTTGGGGTGGAGGAGG
AGGATGGCCGCCCCACCCATTGCGGTGACTGCAAGACGTCCGACATGCGA
AATGTTGTCAGCAAATCGTGCAAACAATGTGGGCTGAAGATACCCAGCTT
TGGGGTGAGG