mRNA_10428 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167289
Unique NamemRNA_10428
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Match: A0A835Z0F7_9STRA (20S proteasome subunit alpha 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F7_9STRA)

HSP 1 Score: 464 bits (1194), Expect = 3.190e-165
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1 
Query:    1 MGDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEAL 705
            MGDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEAL
Sbjct:    1 MGDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEAL 235
[Close]
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Match: W7TKE3_9STRA (Proteasome subunit alpha type 2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKE3_9STRA)

HSP 1 Score: 398 bits (1023), Expect = 3.830e-139
Identity = 196/233 (84.12%), Postives = 217/233 (93.13%), Query Frame = 1 
Query:    4 GDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEA 702
            GDSAYSFSLTTFSRTGKLLQIEYAL+A QQGKTSLGI+ATNGVVIATEKKLP+VL+DE  V KI L+ PSTGFV+SGLGPDYRVLVR SRK+AQ YF  YRE QPV QLVRDTAGVMQE+TQSGGVRPFG+SLLVAGYDD+GPQL+QVDPSGAYFGW+A+AIGKN +NAK+FLEKRYN+EMELDDA+HTALLT+REGFEGEM E NIE+GI+G DRKFRILTPAEV+DYLDEA
Sbjct:    3 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDEAHVQKIELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYFLQYREHQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWQATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNESNIEIGIIGADRKFRILTPAEVKDYLDEA 235
[Close]
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Match: D7FZD1_ECTSI (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD1_ECTSI)

HSP 1 Score: 387 bits (995), Expect = 5.510e-135
Identity = 195/234 (83.33%), Postives = 213/234 (91.03%), Query Frame = 1 
Query:    1 MGDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEA 702
            MGDSAYSFSLTTFSRTGKLLQIEYAL AVQQGKTSLGIKATNGVVI TEKKLP+VL+D  +V+KI+LVTPSTGFVYSGLGPDYRVL R SRK+AQ Y+N YRE+QPV QLVRDTAGVMQEYTQ GGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKA+AIGKNF+NAK+FLEKR+++E ELDDA+HTALLTMREGFEGEMTE NIE      DRKFRIL+  E +D+LDEA
Sbjct:    1 MGDSAYSFSLTTFSRTGKLLQIEYALMAVQQGKTSLGIKATNGVVIVTEKKLPSVLIDSDEVSKISLVTPSTGFVYSGLGPDYRVLARKSRKQAQAYYNIYREVQPVGQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEEAELDDAVHTALLTMREGFEGEMTEKNIE------DRKFRILSEQEGKDFLDEA 228
[Close]
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Match: A0A7S1BSA3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BSA3_9STRA)

HSP 1 Score: 371 bits (953), Expect = 1.700e-128
Identity = 178/234 (76.07%), Postives = 208/234 (88.89%), Query Frame = 1 
Query:    1 MGDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEA 702
            MGDSAYSFSLTTFSRTGKLLQIEYALNAV  G+TSLGI A +GVVIAT+KK+ + LVD   V ++  +TPSTGFVYSG+GPDYRVLVR +RK +Q Y+ TYRE+QPV  LV+ TAGVMQEYTQSGGVRPFGVSLLVAGYDDDGP LYQVDPSGAYFGW+A+AIGKN++NAK+FLEKRY +EMEL+DAIHTALLT+REGFEGEM   NIE+GI+G+DRKF++L P +++DYLDEA
Sbjct:    1 MGDSAYSFSLTTFSRTGKLLQIEYALNAVANGRTSLGIAAKDGVVIATDKKIASALVDTDHVGRVEEITPSTGFVYSGVGPDYRVLVRKARKSSQSYYRTYREVQPVGALVKQTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPHLYQVDPSGAYFGWRATAIGKNYINAKNFLEKRYQEEMELEDAIHTALLTLREGFEGEMNGRNIEVGIIGKDRKFKLLNPQQIQDYLDEA 234
[Close]
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Match: A0A7S2BD82_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BD82_9STRA)

HSP 1 Score: 367 bits (941), Expect = 1.150e-126
Identity = 178/234 (76.07%), Postives = 202/234 (86.32%), Query Frame = 1 
Query:    1 MGDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEA 702
            M      FSLTTFSRTGKL QIEYALNA+  GK +LGIKA+NGVV+ T+KKLP+ LVDEK V K+  +TPS G VY+GLGPDYRVLV+TSRK AQ Y+ TY E QP+  LV+DTA V QEYTQ+GGVRPFGVSLLVAGYDDDGP L+QVDPSGAYFGWKA+AIGKNF NA+SFLE+R+N+EMEL+DAIH ALLTMREG+EGEM E+NIEL I+GEDRKFRILTPAEVRDYLDEA
Sbjct:    1 MASGGMDFSLTTFSRTGKLFQIEYALNAISGGKLALGIKASNGVVLCTDKKLPSTLVDEKQVQKLEEITPSCGMVYAGLGPDYRVLVKTSRKSAQKYYTTYHEQQPIPMLVKDTASVCQEYTQAGGVRPFGVSLLVAGYDDDGPHLFQVDPSGAYFGWKATAIGKNFKNARSFLERRFNEEMELEDAIHNALLTMREGYEGEMNENNIELAIIGEDRKFRILTPAEVRDYLDEA 234
[Close]
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Match: A0A8J2SQ24_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQ24_9STRA)

HSP 1 Score: 367 bits (941), Expect = 1.190e-126
Identity = 178/232 (76.72%), Postives = 208/232 (89.66%), Query Frame = 1 
Query:    7 DSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEA 702
            D++YS+SLTTFSR+GKLLQIEYAL AV +GKTS+GIKA NGVV+ T+KK+   LVD + V K+  V+PS GFVYSG+GPDYRVLV+ +RK+AQ YF  YR L+PV  LV+DTA VMQEYTQSGGVRPFG+SLLVAGYDD+GPQL+QVDPSGAY+GWKASAIGKNF NA+SFLEKRYND++ELDDAIHTALLTMREGFEGEMTEH IE+GIVGEDR FR+LTPAEV+D+LDE+
Sbjct:    4 DASYSYSLTTFSRSGKLLQIEYALTAVGEGKTSIGIKAKNGVVLITDKKIQNKLVDVQQVKKLEKVSPSVGFVYSGVGPDYRVLVKKARKQAQAYFLQYRALKPVKALVQDTASVMQEYTQSGGVRPFGISLLVAGYDDEGPQLFQVDPSGAYYGWKASAIGKNFKNARSFLEKRYNDDVELDDAIHTALLTMREGFEGEMTEHTIEVGIVGEDRVFRVLTPAEVKDFLDES 235
[Close]
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Match: A0A7S2GQ83_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQ83_9STRA)

HSP 1 Score: 362 bits (930), Expect = 9.870e-125
Identity = 175/233 (75.11%), Postives = 201/233 (86.27%), Query Frame = 1 
Query:    4 GDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEA 702
            GD+ YSFSLTTFSRTGKL QIEYALNA+  GK ++GIKATNGVV+ T+KKLPT L+D   V K+  +T S G  Y+GLGPD+RVLV+ SRK+AQ Y+ TY E QP+  LVRDTAGV QEYTQSGGVRPFGVSLLVAGYDDDGP L+QVDPSGAYFGWKA+AIGKNF NA+SFLE+RY ++M+L+DAIH ALLTMREGFEGEM EHNIEL +V +DRKFRILTP+EVRDYLDEA
Sbjct:   19 GDANYSFSLTTFSRTGKLFQIEYALNAISAGKLAIGIKATNGVVLCTDKKLPTALIDGGKVHKVEEITSSCGMTYAGLGPDFRVLVKNSRKQAQKYYTTYHEKQPIPMLVRDTAGVCQEYTQSGGVRPFGVSLLVAGYDDDGPHLFQVDPSGAYFGWKATAIGKNFKNARSFLERRYREDMDLEDAIHNALLTMREGFEGEMDEHNIELAVVDQDRKFRILTPSEVRDYLDEA 251
[Close]
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Match: A0A7S2SP97_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP97_9STRA)

HSP 1 Score: 358 bits (918), Expect = 3.910e-123
Identity = 172/233 (73.82%), Postives = 202/233 (86.70%), Query Frame = 1 
Query:    7 DSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEAL 705
            ++ YSFSLTTFSRTGKL QIEYALNA+Q GK +LGI+A NGVVI T+KK+PT L+D  +V K+  +TPS G VY+GLGPDYRVLV+ +RK AQ Y+ TY E+QPV  LV+DTA V QEYTQSGGVRPFGVSLLVAG+DD+GP L+QVDPSG YF WKA+AIGKNF NA+SFLE+RY D++E+DDAIHTALLTMREGFEGEM EHNIEL ++G DRKFRIL+PAEVRDYLDEA+
Sbjct:    5 EANYSFSLTTFSRTGKLFQIEYALNAIQGGKLALGIRAKNGVVICTDKKVPTSLIDSAEVHKVEEITPSCGMVYAGLGPDYRVLVKNARKTAQKYYTTYHEVQPVPMLVKDTALVCQEYTQSGGVRPFGVSLLVAGFDDEGPHLFQVDPSGTYFAWKATAIGKNFKNARSFLERRYRDDIEIDDAIHTALLTMREGFEGEMNEHNIELAVIGADRKFRILSPAEVRDYLDEAV 237
[Close]
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Match: B7GC84_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC84_PHATC)

HSP 1 Score: 352 bits (903), Expect = 7.260e-121
Identity = 174/235 (74.04%), Postives = 206/235 (87.66%), Query Frame = 1 
Query:    1 MGDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDG-PQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEA 702
            MGDSAYSFSLTTFSRTGKLLQIEYALNAV  G+T+LGI A +GVVIAT+KKLP+VLVD   V K+  +TP+TGF YSG+GPDYRVLV+ +RK +Q Y   Y +++P+SQLV+ TAGVMQEYTQ GGVRPFGVSLLVAG D DG P LYQVDPSGAYFGWKA+AIGKNF++AKSFLEKRY+D+MEL+DAIHTALLT+REGFEGEM+  NIE+GIV +D KF++LTP +++DYLDEA
Sbjct:    1 MGDSAYSFSLTTFSRTGKLLQIEYALNAVANGRTALGICAKDGVVIATDKKLPSVLVDTAHVHKMETITPTTGFCYSGVGPDYRVLVKRARKSSQAYVRMYGDIEPISQLVKSTAGVMQEYTQRGGVRPFGVSLLVAGLDGDGRPGLYQVDPSGAYFGWKATAIGKNFVSAKSFLEKRYSDDMELEDAIHTALLTLREGFEGEMSADNIEVGIVKQDGKFQVLTPEQIQDYLDEA 235
[Close]
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Match: A0A7S1ZX62_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZX62_TRICV)

HSP 1 Score: 350 bits (898), Expect = 4.340e-120
Identity = 179/236 (75.85%), Postives = 201/236 (85.17%), Query Frame = 1 
Query:    1 MGDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEKKLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNTYRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDG-PQLYQVDPSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFEGEMTEHNIELGIVGE-DRKFRILTPAEVRDYLDEA 702
            MGDSAYSFSLTTFSRTGKLLQIEYALNAV  G+TSLGI A +GVV+AT+KK  + LVD  DV K+  V    GFVYSG+GPDYRVLVR +RK AQ YF  YRE QPVSQLV+ TA VMQEYTQSGGVRPFGVSLLVAG D DG P+LYQVDPSGAYFGWKA+AIGKN++NAK+FLEKRY D+MEL+DA+HTALLT+REGFEGEMT  NIE+GIV + D KFR+LT  EV+DYLDEA
Sbjct:    1 MGDSAYSFSLTTFSRTGKLLQIEYALNAVANGRTSLGICARDGVVVATDKKFQSDLVDSDDVTKVERVNDGCGFVYSGVGPDYRVLVRKARKSAQSYFRVYREPQPVSQLVKSTASVMQEYTQSGGVRPFGVSLLVAGVDGDGTPRLYQVDPSGAYFGWKATAIGKNYVNAKNFLEKRYTDDMELEDAVHTALLTLREGFEGEMTSKNIEVGIVSKSDGKFRVLTADEVQDYLDEA 236
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167289 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0F7_9STRA3.190e-165100.0020S proteasome subunit alpha 2 n=1 Tax=Tribonema m... [more]
W7TKE3_9STRA3.830e-13984.12Proteasome subunit alpha type 2 n=3 Tax=Monodopsid... [more]
D7FZD1_ECTSI5.510e-13583.33PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A7S1BSA3_9STRA1.700e-12876.07Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2BD82_9STRA1.150e-12676.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2SQ24_9STRA1.190e-12676.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2GQ83_9STRA9.870e-12575.11Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2SP97_9STRA3.910e-12373.82Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
B7GC84_PHATC7.260e-12174.04Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1ZX62_TRICV4.340e-12075.85Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_49contigContig_49:42881..47957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167289|e_gw1.49.141.1
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
KEGG ModuleM00337,M00340
KEGG Pathwayko03050,map03050
KEGG koko:K02726
EC3.4.25.1
GOsGO:0000502,GO:0000932,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0005840,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0035770,GO:0036211,GO:0036230,GO:0036464,GO:0042119,GO:0042175,GO:0042221,GO:0042742,GO:0042802,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051704,GO:0051707,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0097708,GO:0098542,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
Preferred namePSMA2
Descriptionthreonine-type endopeptidase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0181@1|root,KOG0181@2759|Eukaryota
Evalue9.03e-136
Seed ortholog2880.D7FZD1
Hectar predicted targeting categoryother localisation
TranscriptId167611
TrackFilteredModels1
ProteinId167289
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167289gene_10428Tribonema minus UTEX_B_3156 geneContig_49 42881..47957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167289Trimin1|167289|e_gw1.49.141.1Tribonema minus UTEX_B_3156 polypeptideContig_49 42881..47957 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10428_1exon_10428_1Tribonema minus UTEX_B_3156 exonContig_49 42881..42998 +
exon_10428_2exon_10428_2Tribonema minus UTEX_B_3156 exonContig_49 44618..44786 +
exon_10428_3exon_10428_3Tribonema minus UTEX_B_3156 exonContig_49 45725..45881 +
exon_10428_4exon_10428_4Tribonema minus UTEX_B_3156 exonContig_49 46997..47122 +
exon_10428_5exon_10428_5Tribonema minus UTEX_B_3156 exonContig_49 47820..47957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10428CDS_10428Tribonema minus UTEX_B_3156 CDSContig_49 42881..42998 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10428 ID=mRNA_10428|Name=jgi.p|Trimin1|167289|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=708bp|location=Sequence derived from alignment at Contig_49:42881..47957+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGATTCAGCGTACAGCTTCTCGCTGACCACTTTCAGCAGGACGGG
CAAGCTCTTGCAGATTGAGTACGCTCTCAATGCAGTGCAGCAGGGAAAGA
CCAGCTTAGGCATTAAAGCGACCAACGGCGTCGTCATAGCGACGGAGAAG
AAGCTGCCGACGGTCCTCGTGGACGAGAAAGACGTGGCAAAGATCAACCT
CGTCACGCCCTCCACCGGCTTTGTCTACTCAGGACTGGGGCCGGACTACC
GCGTGCTCGTGCGGACGTCTCGGAAAAAGGCACAGGGATACTTCAACACG
TACCGGGAGCTGCAGCCAGTGTCGCAGCTTGTGCGTGACACGGCAGGCGT
CATGCAGGAGTACACGCAGTCCGGCGGCGTGCGGCCATTCGGCGTGTCGC
TGCTCGTGGCAGGCTACGATGACGACGGACCGCAGCTGTACCAGGTGGAC
CCGAGTGGCGCATACTTTGGCTGGAAGGCCTCTGCCATCGGCAAGAACTT
CCTCAACGCCAAGTCCTTCCTGGAAAAGCGCTACAATGACGAGATGGAAC
TGGACGACGCCATTCACACGGCGCTGCTGACGATGCGCGAGGGCTTTGAG
GGCGAGATGACCGAGCACAACATTGAGCTGGGCATCGTAGGCGAGGACCG
CAAGTTCAGGATACTCACGCCCGCAGAGGTCCGCGACTACCTGGACGAAG
CCCTTTAA
back to top

protein sequence of jgi.p|Trimin1|167289

>Trimin1|167289|e_gw1.49.141.1 ID=Trimin1|167289|e_gw1.49.141.1|Name=jgi.p|Trimin1|167289|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=236bp
MGDSAYSFSLTTFSRTGKLLQIEYALNAVQQGKTSLGIKATNGVVIATEK
KLPTVLVDEKDVAKINLVTPSTGFVYSGLGPDYRVLVRTSRKKAQGYFNT
YRELQPVSQLVRDTAGVMQEYTQSGGVRPFGVSLLVAGYDDDGPQLYQVD
PSGAYFGWKASAIGKNFLNAKSFLEKRYNDEMELDDAIHTALLTMREGFE
GEMTEHNIELGIVGEDRKFRILTPAEVRDYLDEAL*
back to top

mRNA from alignment at Contig_49:42881..47957+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10428 ID=mRNA_10428|Name=jgi.p|Trimin1|167289|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5077bp|location=Sequence derived from alignment at Contig_49:42881..47957+ (Tribonema minus UTEX_B_3156 )
ATGGGTGATTCAGCGTACAGCTTCTCGCTGACCACTTTCAGCAGGACGGG
CAAGCTCTTGCAGATTGAGTACGCTCTCAATGCAGTGCAGCAGGGAAAGA
CCAGCTTAGGCATTAAAGGTAAGCAAGCGTTTAGTAATCACCAAAGCGGT
GGCTGTGTCTCCACACAAAGCAGAGCAACAACTGTACTTCTTCTGCAACG
GCATGGCTTCTGAAGATACAGCTCGACAAGCAACAATCAGAGCCTGTCTG
ATGCAGTCCCTGCCTGCAATGACGTATTCAATCGAGAAGGTTGTGGGTTA
CACGAAGCTCTGGGTAGCTTGCGGGCAGCCGCTTCAAGAAGTACGCCGAA
CCTCAAATCCTTGAACTTAACAGATGAACAGTTGTTGGTGTGTCATGGTC
ACCACCGTTCGCAATAGCAGCACCCCCTGTCAACGGGTATGCAGGCGCTG
TGTACAGATCCTGACACTCTGTTGCTGCGCACTTGTCTGGTGCTTCACCA
AGGCCATTAACACAGGCAATGCCCACCTGGTGCTTCAACAAGGCCATGAA
TACAGGCGATGCCCATGTAGTTACAGGCATCATGTTCCCTAGGTAGTAGG
GCACAGGCGTCACTCCTCCGCGTGCAAGTTGACAGTGCACCCTTATCCGT
AGTGTAGTGCCTGCAGCTCACCATGGCTTTCTGCATAAACTGCAGGCGCA
TCTCCAGCTACCCGCAGATGCTCACTCACGCCATCAGCACATGCCACAGT
GTGCCAAGCTGAGCCATGTTGAGATAGTTACGCATACTGGTCAGCCCCCC
AATAGCTGCACTACGCGATCCAATTTATGCTCAGCGTAATACCAGGTCAT
CAACACCATGCTATTGCACAACCAAGAGCTGGCGCAAAGTGGCCTGATTC
AGGCGCCGATTCAGTTAGTGCCGGTCCGCTGCCGCTAAGTACTTGAACTT
GCTGTGCCAGATGCGCGCAGTCTCTACATCGCTGCGGCAGTGCACAGCAC
CGCCTTCTCGCAGCAAGAAAGTGCGCGGGCTAACAGCTTTAACAGCAACG
CGGGGCAAGTGTTCTCCATCAGACTTGGGAAATGATATGCACGGCTCTCT
TTCTACTTTAACACTGTCGACTACAGCGTCAAACAGTGGTGTCGCTGCCG
GGCGAAAGCCCTATCGATGGGTCAGCTTCAATGTCCTGCGGGATCCAGAT
CGTGCGGCGTATACAGCAATAGTTGGCTTGTCCTGTGCAAATGTCATGTT
GAAGTTGCATACGAAATCGCCAACCCGTCCGCTGCCAGCAACGATCCCCC
GCTGCCACGGCAGCACAGGCGCAAACGGATGCAGCACGCCAGTGACAAGG
ATGCCAACTCATTCATTGAACTGAGCAGTGCAAAGCATTTCACCTGTGCG
CGCTCGCGCCCGGACCTGTGCCGTTGTGCAGGAGTCAACAGCACCGCCGT
GGCGACAGAAGAGGCAGCTGCCGACTGCCACTGTCAACTTATACACTGTG
CCTCCTTTGTCCCCTTTACGCACCCGTGCGCGCTGGCTGTGACGCTCCAA
AGCGATCAGCGGCGTCGTCATAGCGACGAGAAGAAGCTGCCGGTCCTTGT
CAATGGAATCGACGCGCTCGCCTCGCCCCCCACGAAATCGCCCCAGAGAG
CCCATCGATGATGACGATGCCAACTGAACTTCTTCTCCACACTCTTGTTC
GCCCCCCTTCACACGCACTGGCTGTGACGCGCCGCAGCGACCAACGGCGT
CGTCATAGCGACGGAGAAGAAGCTGCCGACGGTCCTCGTGGACGAGAAAG
ACGTGGCAAAGATCAACCTCGTCACGCCCTCCACCGGCTTTGTCTACTCA
GGACTGGGGCCGGACTACCGCGTGCTCGTGCGGACGTCTCGGAAAAAGGC
ACAGGGGTAGGTAGCACACTACCCAGGGGGTATGTATCACATGGCAGCAT
GCATAACCGGCTTTTGTGTACTTGGGCGTTGGGCCGGTCTACTGCAGTGC
TCGTGCGGACGTTGCGGGGTAGGTGGCGCGTTGCCTAGAGGGTGGGTATC
AAAGGGCAGCATACATACCCGGCTCTTGTGTACTTGGGGCTCTGGTTAGG
CTATCGCGTCCCGTGCGGACATCGCGGAAAAAGGCGCAGGGGTAGGTAGC
ATGATGGTGGCCTAGGGGGTAGGCATCACATGGAAGCATACATACCCAGC
TTTTGTGTACTTGTGCCTTAGGCCGGACTACTACCGCGTGCTCGTGCGGA
CGTCGCTGACAAAGGTGCAGGGGTAGGTAACATGATGGTGGCCTAGGGGG
CAGGTTTCACATTGCAGCATACATACCCGGCTTTTGTGTACTTTGGGCCT
TCGCCCAAACCGCTGCGTGCTCGTGCGGACGTCTCGGAAAAAGGCACAGG
GGAAGGTAGCATGAGGGTGGCCTAGGGGGTAGGTATCTCATGGCAGCATA
CATACCCGGCTTTGTCTACTCAAGTCTTGGGCTGGCAGTGCTCGTGCGGA
CATCACGGGAAAAGGGTGCAGTGGTAGTAGGTAGCATGGGGTAGACATCA
CTGGAAGTGTGCCGTTGCCTTGAGCATCGTTTCCAAAACTACAGAACCCC
GCAGCTGAATGTTAGGTTGTCCATGAAGCGTCCTTGGGCTGCTTACGAAC
CAAGTCCAGTGTGAAATGCTCAACAGATACTTCAAGACGGCGTCAGCAGC
AGCTCAAGTGCTCCACAGGCTTTGTACTTCTACAATGTTCCAATGCCGAT
GATGCAGCACACGACGTCCGCCTTGTGCTATGTGGCTGTGTCTGACGCGT
CCGCCTTCTTTTTGCCAAACTTCAACTTCCAACTCACCGCGCAGATACTT
CAACACGTACCGGGAGCTGCAGCCAGTGTCGCAGCTTGTGCGTGACACGG
CAGGCGTCATGCAGGAGTACACGCAGTCCGGCGGCGTGCGGCCATTCGGC
GTGTCGCTGCTCGTGGCAGGCTACGATGACGACGGACCGCAGCTGTACCA
GGTAAGCGCTTTTTCCAGATACATTCGATATTATTTGTGATTGTAGGGTA
CCTCCAGGTAAATTGTAGGGTACCTTCAGGTAAGTTTCATCGGATATAGG
TCTTTTCAATAAAGAGTACACTCAGTCCGGCGGCGTGCGGCCATTTGGCA
TCACACTGCTCGTGGCAGGCTACAACGACGACGGACCGCAGCTCTACGAG
GCAAGCACTGCTGTCAGAACGCTGTACCTGGTTAGTTTAAGGTACCTCCA
GGTATGTTGCACCGAATATACATTTGCTTGTTCTTCAGAGTGCACGCGGT
TCGGCGGCGTGCGGCCATTTGGCATGTCGTGTCGCTACTCGTGGCTGGCT
ACGAGGACGACGGACCACAGCTGTACCAGGCAAGCACGTTGTTGCAATAT
TAGTTTAAAGTGATCATCGGTCCTGAATGGTGTGAAAAGCTGCGGCCAAC
TGGCGTGGCACTGCTGGTGGCAGGCTACGACGACGGCGGACCGCAGCTCT
ACCAGTTACGCGTTTCTGTCAGATATGTGCATGGGAGTCAATCACGTACC
TCGAAACATGTCAATTTCCGTGTAGTGCAACTGCTATTTTCCTTCTGATC
TCTTTCTCAGAAGACATGTACATAGAAGTCACGTACTTTGTGACGCACGT
CAACCTGCATGCAGTGCAAGTGCCGTTGTGCAACTGTACTGGCCAGTTGT
CGTTTTGTGATGGCTACAGAAGCGTACCTGCAAAACGCAGTTCTTGTTGA
TGATGGTGCAGCACCCAAGTACTGCTCTCGACCACTTGAGGAGCTCGCAC
ATTTTTTGTCAAGGCCATGAGCAGGACAGCGTTGCTGCACAAGCAGTGCG
TCAAGTCTGCGCGCACCATGCGGACTACTCGTGTGCCTTTGGAACAATAA
TATATATGACGAATGAGTGCTGCTGCAGCACATATACTTCAAGTTGAAGT
ACATCTGCTCTTGTACATTTACGCCTGAACTATGTGATGTATAAGTGTGG
GCGCTGCTGCAGGCGGGCCCCTGGCGGCGCATACGTGGCGCATGTACTTC
AAGTTGAAGTGCACTTTATACTTGAAGTTTTGATATATGACTGCATTTGA
TGCATGACTGCTGCAGGTGGACCCGAGTGGCGCATACTTTGGCTGGAAGG
CCTCTGCCATCGGCAAGAACTTCCTCAACGCCAAGTCCTTCCTGGAAAAG
CGCTACAATGACGAGATGGAACTGGACGACGCCATTCACACGGTAAATTC
ATGAATTCACTTACCTTGTTTCATGAACAAGTCAATAATTTCACATCAGA
TGGAGCTGGACGGCGCCATACACACGGTGAATTATTGAATTCACTTGCCT
TGTTTACAAACAAGCATGCTTTGAAGTATTCATTCAACAAATCGTCGTGA
AGGATTTTGCAACGGGCACCTGCGTGCGTGGATGGCGATCAGCAACGGTC
CATGTTTGTTGTTCATCCTAGTAGACCCGAAGGGCGCTAGCAACCACAAC
TCGTCGCGCGTTTGTGCGTGATATGACCCCCCACCGCTTGTCAAACGCCA
TCGCTCCCAAGGCGCGCATTGGGCCAACGTCTCCTTGGCACCGTTGAGCA
CCACTTGTGCACTCACCTCACCACCATGCAATCCACTATTTGCCCGCCGC
GACACCTCTCGCCAACTCAAAAAACAACTGTTGTGCACTCATCTCACCAC
CCTGCGGTCCTGTCGCCGCAGGCGCTGCTGACGATGCGCGAGGGTTTCGA
GGGCGAAACAACCGAGCACAACATTGCAACACCACGCACGCATGTCAACG
TCGCCTCGGCTACGTGCAGCACCGCTCGTGCACTCATCTCACCACCCTGC
AATCCACTTGCTGCAACAGTGCTGCGGCAACATGAATCAAAGCTGTGCAC
TCGTCTCACCACCCTGCGATCCTTTTGCCATCACCGCAGGCGCTGCTGAC
GATGCGCGAGGGCTTTGAGGGCGAGATGACCGAGCACAACATTGAGCTGG
GCATCGTAGGCGAGGACCGCAAGTTCAGGATACTCACGCCCGCAGAGGTC
CGCGACTACCTGGACGAAGCCCTTTAA
back to top

Coding sequence (CDS) from alignment at Contig_49:42881..47957+

>mRNA_10428 ID=mRNA_10428|Name=jgi.p|Trimin1|167289|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=708bp|location=Sequence derived from alignment at Contig_49:42881..47957+ (Tribonema minus UTEX_B_3156 )
ATGGGTGATTCAGCGTACAGCTTCTCGCTGACCACTTTCAGCAGGACGGG
CAAGCTCTTGCAGATTGAGTACGCTCTCAATGCAGTGCAGCAGGGAAAGA
CCAGCTTAGGCATTAAAGCGACCAACGGCGTCGTCATAGCGACGGAGAAG
AAGCTGCCGACGGTCCTCGTGGACGAGAAAGACGTGGCAAAGATCAACCT
CGTCACGCCCTCCACCGGCTTTGTCTACTCAGGACTGGGGCCGGACTACC
GCGTGCTCGTGCGGACGTCTCGGAAAAAGGCACAGGGATACTTCAACACG
TACCGGGAGCTGCAGCCAGTGTCGCAGCTTGTGCGTGACACGGCAGGCGT
CATGCAGGAGTACACGCAGTCCGGCGGCGTGCGGCCATTCGGCGTGTCGC
TGCTCGTGGCAGGCTACGATGACGACGGACCGCAGCTGTACCAGGTGGAC
CCGAGTGGCGCATACTTTGGCTGGAAGGCCTCTGCCATCGGCAAGAACTT
CCTCAACGCCAAGTCCTTCCTGGAAAAGCGCTACAATGACGAGATGGAAC
TGGACGACGCCATTCACACGGCGCTGCTGACGATGCGCGAGGGCTTTGAG
GGCGAGATGACCGAGCACAACATTGAGCTGGGCATCGTAGGCGAGGACCG
CAAGTTCAGGATACTCACGCCCGCAGAGGTCCGCGACTACCTGGACGAAG
CCCTTTAA
back to top