mRNA_1040 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Match: A0A835ZIZ2_9STRA (JmjC domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIZ2_9STRA) HSP 1 Score: 382 bits (982), Expect = 1.100e-133 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1 Query: 1 LAGQSLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAPKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVLALARRLLAAPARAPTRTATP 636 LAGQSLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAPKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVLALARRLLAAPARAPTRTATP Sbjct: 1 LAGQSLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAPKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVLALARRLLAAPARAPTRTATP 212
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Match: A0A7S2W7A1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7A1_9STRA) HSP 1 Score: 203 bits (517), Expect = 3.510e-62 Identity = 104/198 (52.53%), Postives = 125/198 (63.13%), Query Frame = 1 Query: 4 AGQSLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAPKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVLALARRLL 597 + S+LR L VTGV+VPW+YVGST+S+FCWHVEDH LYS+NYHH+G+PK WYGVPG A+ ED R P L S PDL+ +++T ISP AL A +R QRPG+F+VT PRAYH+G NLG NCAEAVNFAP DWL S A + RR R PVF+H+ LVL L R LL Sbjct: 64 SSSSMLRLLDAEVTGVVVPWMYVGSTYSSFCWHVEDHFLYSVNYHHWGSPKLWYGVPGEDADKVEDFVRRSMPTLARSTPDLMLRMITAISPCALRSAG-----------------------IRTFRAIQRPGQFIVTFPRAYHSGFNLGFNCAEAVNFAPSDWLWWSRAALDWYRRFHRAPVFAHDSLVLGLVRDLL 238
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Match: D8LES6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES6_ECTSI) HSP 1 Score: 210 bits (534), Expect = 4.650e-59 Identity = 105/190 (55.26%), Postives = 124/190 (65.26%), Query Frame = 1 Query: 13 SLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAPKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVLAL 582 SLL+ LG ++ GVMVPWLYVG FSAFCWH EDH LYSINY H G+PKRWYGVPG+ AE FE + ++P+LF + PDLL QLVTM P + + + V + TQR GEFV+T P+AYHAG N+G NCAEAVNFAPPDW+ AQE R R PVFSHEGLVL+L Sbjct: 730 SLLQFLGTQIQGVMVPWLYVGMAFSAFCWHNEDHYLYSINYLHAGSPKRWYGVPGSMAEKFETTVQLMFPELFEAHPDLLMQLVTMAHPTEVSKRG-----------------------VPVSSTTQREGEFVLTFPQAYHAGFNMGTNCAEAVNFAPPDWIPWGNAAQERYRLHKRKPVFSHEGLVLSL 896
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Match: I2CPW6_NANGC (Jumonji domain protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPW6_NANGC) HSP 1 Score: 193 bits (490), Expect = 7.140e-59 Identity = 108/205 (52.68%), Postives = 121/205 (59.02%), Query Frame = 1 Query: 1 LAGQSLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFG-APKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVLALARRLLAAPAR 612 LA S+L HL VTGV+VPWLYVG FSAFCWH EDH LYSINY H G PK WYG+PGAA +AFE R YP+L A PDL+ QLVTM+ P + L V QRPG+FVVT P AYHAG N N AEAVNFAPPD+L +AQ RR R PVFS + LV+A A LL PAR Sbjct: 1 LATGSMLHHLDVPVTGVVVPWLYVGMAFSAFCWHAEDHYLYSINYLHHGLGPKHWYGLPGAAGDAFEALVRESYPELVARNPDLMLQLVTMVDPRWVANRG-----------------------LPVYTTKQRPGQFVVTFPHAYHAGFNHHFNLAEAVNFAPPDFLPWGGKAQHLYRRLHRAPVFSQDQLVVAAAAALLQRPAR 182
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Match: A0A150GC26_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GC26_GONPE) HSP 1 Score: 206 bits (523), Expect = 1.460e-57 Identity = 108/192 (56.25%), Postives = 124/192 (64.58%), Query Frame = 1 Query: 13 SLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAPKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVLALAR 588 SLLRHL +TG+ VPWLYVG FSAFCWHVEDH LYSINY+HFG PKRWY VP A+ EAFE A RA P+ F +QPDLL QLVTM+SP L AA + + ALTQ GEFVVT P AYHAG N G+NCAEAVNFAPPDWL + A+E R + PV + L+L +AR Sbjct: 955 SLLRHLSEPITGITVPWLYVGMLFSAFCWHVEDHLLYSINYNHFGDPKRWYAVPAASREAFEAAFRAALPNQFEAQPDLLLQLVTMVSPRTLQ-----------------------AAGVPLYALTQEEGEFVVTWPGAYHAGFNHGLNCAEAVNFAPPDWLRMAGAAEERYRFYRKQPVINQHELLLKVAR 1123
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Match: A0A7S4AZJ3_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4AZJ3_CHRCT) HSP 1 Score: 195 bits (496), Expect = 3.790e-56 Identity = 101/196 (51.53%), Postives = 123/196 (62.76%), Query Frame = 1 Query: 10 QSLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAPKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRA--ARPPVFSHEGLVLALARR 591 Q +L H G ++G+MVPWLYVG FS+FCWHVEDH +SINY H+G+PK WYGVPGA A+AFEDA R P+L S LL ++VTM+ P+ L RA + VC L QRPG FV+T PRAYHAG + G+NCAE+ NFA PDWL + EA R A R P FSHE L+L LAR+ Sbjct: 122 QCVLSHAGDNISGMMVPWLYVGMLFSSFCWHVEDHFAHSINYMHWGSPKTWYGVPGAQAKAFEDAVRRAVPELIESDEGLLFKMVTMVPPSELRRAD-----------------------VDVCRLLQRPGSFVITWPRAYHAGFSHGLNCAESSNFATPDWLPWGRASVEAFRAAPNTRRPCFSHEMLLLTLARK 294
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Match: A0A4D9CMX2_9STRA (JmjC domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMX2_9STRA) HSP 1 Score: 192 bits (488), Expect = 1.030e-54 Identity = 108/205 (52.68%), Postives = 121/205 (59.02%), Query Frame = 1 Query: 1 LAGQSLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFG-APKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVLALARRLLAAPAR 612 LA S+L HL VTGV+VPWLYVG FSAFCWH EDH LYSINY H G PK WYG+PGAA +AFE R YP+L A PDL+ QLVTM+ P + L V QRPG+FVVT P AYHAG N N AEAVNFAPPD+L +AQ RR R PVFS + LV+A A LL PAR Sbjct: 322 LATGSMLHHLDVPVTGVVVPWLYVGMAFSAFCWHAEDHYLYSINYLHHGLGPKHWYGLPGAAGDAFEALVRESYPELVARNPDLMLQLVTMVDPRWVADRG-----------------------LPVYTTKQRPGQFVVTFPHAYHAGFNHHFNLAEAVNFAPPDFLPWGGKAQHLYRRLHRAPVFSQDQLVVAAAAALLQRPAR 503
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Match: A0A7S1T4T5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T4T5_9CHLO) HSP 1 Score: 182 bits (461), Expect = 3.520e-54 Identity = 94/188 (50.00%), Postives = 109/188 (57.98%), Query Frame = 1 Query: 13 SLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAPKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVL 576 SLLRH+ ++ GVMVPW+YVG +SAFCWH+EDH YSINY H+G KRWY VP A AFE A PD A QPDLL QLVT++SP L ++ + V L Q +FVVT P AYH G N G NCAEAVNF PPDWL +QE R RPPV S E L+L Sbjct: 21 SLLRHIKDKIPGVMVPWMYVGMMYSAFCWHIEDHMFYSINYMHWGEAKRWYSVPAYATAAFEAAFHEWLPDQMAMQPDLLFQLVTLLSPEKLNQSG-----------------------VPVYGLVQEAHDFVVTFPCAYHGGFNTGFNCAEAVNFCPPDWLRFGSVSQERYRHFRRPPVLSLEELIL 185
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Match: A0A446Z0Z6_TRITD (Uncharacterized protein n=4 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446Z0Z6_TRITD) HSP 1 Score: 192 bits (487), Expect = 3.840e-54 Identity = 97/192 (50.52%), Postives = 118/192 (61.46%), Query Frame = 1 Query: 13 SLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAPKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVLALAR 588 S+LR + ++ GVMVPWLY+G FS+FCWHVEDH YSINY H+G PK WYGVPGA A AFE R PDLF +QPDLL LVTM++P+ L A + V ++ Q PG FV+T PR+YH G NLG+NCAEAVNFAP DWL H E R + PV SHE L+ +A+ Sbjct: 458 SVLRTVKDKIPGVMVPWLYMGMLFSSFCWHVEDHCFYSINYLHWGEPKCWYGVPGAEANAFERVMRKALPDLFDAQPDLLFHLVTMLNPSVLQ-----------------------ANGVPVYSVMQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGGIGAELYRMYRKAPVLSHEELLYVVAK 626
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Match: A0A5J9T855_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9T855_9POAL) HSP 1 Score: 195 bits (496), Expect = 5.950e-54 Identity = 97/192 (50.52%), Postives = 119/192 (61.98%), Query Frame = 1 Query: 13 SLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAPKRWYGVPGAAAEAFEDAARALYPDLFASQPDLLHQLVTMISPAALLRAXXXXXXXXXXXXXXXXXXXXVAAPLRVCALTQRPGEFVVTLPRAYHAGLNLGVNCAEAVNFAPPDWLAHSWRAQEALRRAARPPVFSHEGLVLALAR 588 S+LR + ++ GVMVPWLY+G FS+FCWHVEDH YSINY H+G PK WYGVPGAAA AFE+ R PDLF +QPDLL LVTM++P+ L + V ++ Q PG FV+T PR++H G NLG+NCAEAVNFAP DWL H E R + PV SHE LV +A+ Sbjct: 529 SVLRTVQDKIAGVMVPWLYIGMLFSSFCWHVEDHCFYSINYLHWGEPKCWYGVPGAAANAFEEVMRQTLPDLFDAQPDLLFHLVTMLNPSILRENN-----------------------VPVYSVMQEPGNFVITFPRSFHGGFNLGLNCAEAVNFAPADWLPHGGTGAELYRLYRKAPVLSHEELVYVVAK 697 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155437 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1040 ID=mRNA_1040|Name=jgi.p|Trimin1|155437|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=636bp|location=Sequence derived from alignment at Contig_1:777293..779711+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGGCGGGGCAGTCGCTGCTGCGGCACCTCGGGCGGCGCGTGACGGGCGTback to top protein sequence of jgi.p|Trimin1|155437 >Trimin1|155437|gw1.1.409.1 ID=Trimin1|155437|gw1.1.409.1|Name=jgi.p|Trimin1|155437|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=212bp LAGQSLLRHLGRRVTGVMVPWLYVGSTFSAFCWHVEDHRLYSINYHHFGAback to top mRNA from alignment at Contig_1:777293..779711+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1040 ID=mRNA_1040|Name=jgi.p|Trimin1|155437|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2419bp|location=Sequence derived from alignment at Contig_1:777293..779711+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_1:777293..779711+ >mRNA_1040 ID=mRNA_1040|Name=jgi.p|Trimin1|155437|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=636bp|location=Sequence derived from alignment at Contig_1:777293..779711+ (Tribonema minus UTEX_B_3156 )back to top |