mRNA_10409 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169789
Unique NamemRNA_10409
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169789 vs. uniprot
Match: A0A836CA13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA13_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.690e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 ALSVTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLFSTK 156
            ALSVTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLFSTK
Sbjct:    1 ALSVTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLFSTK 52
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BLAST of jgi.p|Trimin1|169789 vs. uniprot
Match: A0A835YLX5_9STRA (Mitochondrial substrate/solute carrier (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.220e-24
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    7 SVTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLF 147
            SVTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLF
Sbjct:   48 SVTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLF 94
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BLAST of jgi.p|Trimin1|169789 vs. uniprot
Match: D7FKM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM9_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.730e-10
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   10 VTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLFSTK 156
            V G L  I  EE F ALWAG  PR+ RS+LSGAIQF SYEF KGLF  +
Sbjct:  356 VLGALGTISREESFSALWAGINPRMARSVLSGAIQFGSYEFVKGLFGVE 404
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BLAST of jgi.p|Trimin1|169789 vs. uniprot
Match: A0A4D9D9P5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9P5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 9.810e-8
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    7 SVTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLFSTK 156
            SV    RKI +EEG   L++G  PR+ R+ LSGAIQF SYE TKG FS K
Sbjct:  147 SVWQTARKIAAEEGVAKLFSGLFPRLTRAFLSGAIQFGSYELTKGAFSGK 196
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BLAST of jgi.p|Trimin1|169789 vs. uniprot
Match: W7TEJ8_9STRA (S-adenosylmethionine mitochondrial carrier n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEJ8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.980e-7
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    7 SVTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLFSTK 156
            SV    RKI +EEG   L++G  PR+ R+ LSGAIQF SYE TKG FS K
Sbjct:  391 SVWQTARKIAAEEGVAKLFSGLFPRLTRAFLSGAIQFGSYELTKGAFSGK 440
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BLAST of jgi.p|Trimin1|169789 vs. uniprot
Match: L1JF96_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JF96_GUITC)

HSP 1 Score: 53.1 bits (126), Expect = 9.220e-7
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   25 RKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKG 141
            ++I+ EEG  AL  G TPRI R++LSGAIQF++YEFTKG
Sbjct:  290 KRIIREEGSGALMLGVTPRILRAILSGAIQFTTYEFTKG 328
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BLAST of jgi.p|Trimin1|169789 vs. uniprot
Match: A0A7S3JUU9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUU9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.750e-6
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 LSVTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLF 147
            LS+      I+ EEG  ALW+G +PR+ R+L+SG +QF SYEFTK  F
Sbjct:  293 LSIPERTLAIIREEGVGALWSGISPRLLRALVSGGLQFGSYEFTKKAF 340
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BLAST of jgi.p|Trimin1|169789 vs. uniprot
Match: A0A7S0AVV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AVV1_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.160e-6
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   22 LRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTK 138
            L  +  EEG   L+AG TPR+G++LLSGAIQF++YE TK
Sbjct:   68 LTTLAREEGLEGLFAGATPRVGKALLSGAIQFATYEETK 106
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BLAST of jgi.p|Trimin1|169789 vs. uniprot
Match: A0A7S4C3C4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C3C4_CHRCT)

HSP 1 Score: 51.6 bits (122), Expect = 3.290e-6
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   22 LRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTK 138
            +R I +EEG PAL++G TP+  R++LSGAIQFS+YE TK
Sbjct:  324 VRAIAAEEGLPALFSGVTPKAVRAVLSGAIQFSTYEATK 362
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BLAST of jgi.p|Trimin1|169789 vs. uniprot
Match: A0A0G4F9G4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F9G4_9ALVE)

HSP 1 Score: 51.6 bits (122), Expect = 3.320e-6
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   25 RKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLF 147
            RKIV  EG   L+AG +PRI R+++SGAIQFS+YE  K LF
Sbjct:  472 RKIVEREGAGMLFAGISPRIARAVVSGAIQFSTYELVKNLF 512
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169789 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A836CA13_9STRA1.690e-28100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLX5_9STRA1.220e-24100.00Mitochondrial substrate/solute carrier (Fragment) ... [more]
D7FKM9_ECTSI2.730e-1063.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D9P5_9STRA9.810e-858.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TEJ8_9STRA1.980e-758.00S-adenosylmethionine mitochondrial carrier n=3 Tax... [more]
L1JF96_GUITC9.220e-764.10Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S3JUU9_9STRA1.750e-652.08Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0AVV1_9STRA2.160e-658.97Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S4C3C4_CHRCT3.290e-661.54Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A0G4F9G4_9ALVE3.320e-660.98Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_67contigContig_67:653281..653439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169789|e_gw1.67.110.1
KEGG TC2.A.29.18
BRITEko00000,ko02000
KEGG koko:K15111
DescriptionS-adenosyl-L-methionine transmembrane transport
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
Evalue4.48e-11
Seed ortholog2880.D7FKM9
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId170111
TrackFilteredModels1
ProteinId169789
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169789gene_10409Tribonema minus UTEX_B_3156 geneContig_67 653281..653439 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10409_1exon_10409_1Tribonema minus UTEX_B_3156 exonContig_67 653281..653439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10409CDS_10409Tribonema minus UTEX_B_3156 CDSContig_67 653281..653439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169789Trimin1|169789|e_gw1.67.110.1Tribonema minus UTEX_B_3156 polypeptideContig_67 653281..653439 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10409 ID=mRNA_10409|Name=jgi.p|Trimin1|169789|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_67:653281..653439+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTCTCAGCGTCACTGGTGGTTTACGCAAGATCGTCTCTGAAGAGGGGTT
TCCAGCCTTGTGGGCGGGCACAACCCCACGTATAGGCAGAAGTTTACTCA
GCGGGGCCATACAGTTCAGCAGTTACGAGTTCACCAAGGGATTATTCTCA
ACAAAGTAA
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protein sequence of jgi.p|Trimin1|169789

>Trimin1|169789|e_gw1.67.110.1 ID=Trimin1|169789|e_gw1.67.110.1|Name=jgi.p|Trimin1|169789|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=53bp
ALSVTGGLRKIVSEEGFPALWAGTTPRIGRSLLSGAIQFSSYEFTKGLFS
TK*
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mRNA from alignment at Contig_67:653281..653439+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10409 ID=mRNA_10409|Name=jgi.p|Trimin1|169789|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_67:653281..653439+ (Tribonema minus UTEX_B_3156 )
GCTCTCAGCGTCACTGGTGGTTTACGCAAGATCGTCTCTGAAGAGGGGTT
TCCAGCCTTGTGGGCGGGCACAACCCCACGTATAGGCAGAAGTTTACTCA
GCGGGGCCATACAGTTCAGCAGTTACGAGTTCACCAAGGGATTATTCTCA
ACAAAGTAA
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Coding sequence (CDS) from alignment at Contig_67:653281..653439+

>mRNA_10409 ID=mRNA_10409|Name=jgi.p|Trimin1|169789|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=159bp|location=Sequence derived from alignment at Contig_67:653281..653439+ (Tribonema minus UTEX_B_3156 )
GCTCTCAGCGTCACTGGTGGTTTACGCAAGATCGTCTCTGAAGAGGGGTT
TCCAGCCTTGTGGGCGGGCACAACCCCACGTATAGGCAGAAGTTTACTCA
GCGGGGCCATACAGTTCAGCAGTTACGAGTTCACCAAGGGATTATTCTCA
ACAAAGTAA
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