mRNA_10388 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169911
Unique NamemRNA_10388
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169911 vs. uniprot
Match: A0A835YPQ2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPQ2_9STRA)

HSP 1 Score: 452 bits (1164), Expect = 1.110e-160
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1 
Query:    1 RQVKRSLRFSKWVLLPVSILLVVCSWVSAGLLTTVGLVAADICVDPRQNIVRAFTNDVIADTARYYVTCDGTNVFAQLIEQGFLFTFIAKGELNSADFKDYAQQCPALAPAKDRVAAALANIKDETGYLSKEIRCREINPMYVQGVEGAICTSGTQDILMAMVGFVLVGIFLALVSTCFIWLMRHVGYAESDRLGIDFNSSKLLQRKTSTMALPPHTAHSRHVSAAETGVSSRR 702
            RQVKRSLRFSKWVLLPVSILLVVCSWVSAGLLTTVGLVAADICVDPRQNIVRAFTNDVIADTARYYVTCDGTNVFAQLIEQGFLFTFIAKGELNSADFKDYAQQCPALAPAKDRVAAALANIKDETGYLSKEIRCREINPMYVQGVEGAICTSGTQDILMAMVGFVLVGIFLALVSTCFIWLMRHVGYAESDRLGIDFNSSKLLQRKTSTMALPPHTAHSRHVSAAETGVSSRR
Sbjct:    1 RQVKRSLRFSKWVLLPVSILLVVCSWVSAGLLTTVGLVAADICVDPRQNIVRAFTNDVIADTARYYVTCDGTNVFAQLIEQGFLFTFIAKGELNSADFKDYAQQCPALAPAKDRVAAALANIKDETGYLSKEIRCREINPMYVQGVEGAICTSGTQDILMAMVGFVLVGIFLALVSTCFIWLMRHVGYAESDRLGIDFNSSKLLQRKTSTMALPPHTAHSRHVSAAETGVSSRR 234
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169911 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YPQ2_9STRA1.110e-160100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_67contigContig_67:486136..487988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169911|e_gw1.67.120.1
Hectar predicted targeting categorysignal peptide
TranscriptId170233
TrackFilteredModels1
ProteinId169911
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169911gene_10388Tribonema minus UTEX_B_3156 geneContig_67 486136..487988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169911Trimin1|169911|e_gw1.67.120.1Tribonema minus UTEX_B_3156 polypeptideContig_67 486136..487988 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10388_3exon_10388_3Tribonema minus UTEX_B_3156 exonContig_67 486136..486498 -
exon_10388_2exon_10388_2Tribonema minus UTEX_B_3156 exonContig_67 486849..487046 -
exon_10388_1exon_10388_1Tribonema minus UTEX_B_3156 exonContig_67 487845..487988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10388CDS_10388Tribonema minus UTEX_B_3156 CDSContig_67 487845..487988 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10388 ID=mRNA_10388|Name=jgi.p|Trimin1|169911|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=705bp|location=Sequence derived from alignment at Contig_67:486136..487988- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCCAGGTGAAGCGGAGCCTGAGGTTCAGCAAGTGGGTGCTACTGCCAGT
GTCCATCCTCCTGGTAGTGTGCAGCTGGGTGTCGGCTGGACTTCTCACAA
CCGTGGGCCTCGTTGCCGCTGACATCTGCGTTGATCCCCGCCAAAACATA
GTGCGCGCCTTCACCAATGACGTCATAGCGGACACAGCGCGCTACTACGT
CACATGCGATGGCACCAACGTTTTTGCACAGCTCATTGAGCAGGGCTTCC
TCTTCACATTTATAGCCAAGGGGGAGCTGAACAGCGCCGATTTCAAGGAC
TATGCGCAGCAGTGCCCCGCGCTGGCTCCCGCCAAAGACCGGGTCGCCGC
CGCGCTGGCAAACATCAAGGACGAGACGGGCTATCTCTCCAAGGAGATCC
GCTGCCGCGAGATCAACCCCATGTATGTGCAGGGGGTGGAGGGCGCCATC
TGCACTAGCGGCACGCAAGACATACTCATGGCCATGGTCGGCTTTGTCCT
GGTGGGCATATTCCTGGCACTCGTTTCGACGTGCTTCATCTGGCTGATGA
GGCACGTGGGCTACGCCGAGAGCGACAGGCTCGGCATAGACTTCAACTCC
TCCAAGCTGCTGCAACGGAAAACTTCAACTATGGCACTCCCCCCGCACAC
GGCGCACTCTCGGCATGTGTCGGCGGCGGAGACGGGCGTCTCGTCACGGC
GCTAG
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protein sequence of jgi.p|Trimin1|169911

>Trimin1|169911|e_gw1.67.120.1 ID=Trimin1|169911|e_gw1.67.120.1|Name=jgi.p|Trimin1|169911|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=235bp
RQVKRSLRFSKWVLLPVSILLVVCSWVSAGLLTTVGLVAADICVDPRQNI
VRAFTNDVIADTARYYVTCDGTNVFAQLIEQGFLFTFIAKGELNSADFKD
YAQQCPALAPAKDRVAAALANIKDETGYLSKEIRCREINPMYVQGVEGAI
CTSGTQDILMAMVGFVLVGIFLALVSTCFIWLMRHVGYAESDRLGIDFNS
SKLLQRKTSTMALPPHTAHSRHVSAAETGVSSRR*
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mRNA from alignment at Contig_67:486136..487988-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10388 ID=mRNA_10388|Name=jgi.p|Trimin1|169911|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1853bp|location=Sequence derived from alignment at Contig_67:486136..487988- (Tribonema minus UTEX_B_3156 )
CGCCAGGTGAAGCGGAGCCTGAGGTTCAGCAAGTGGGTGCTACTGCCAGT
GTCCATCCTCCTGGTAGTGTGCAGCTGGGTGTCGGCTGGACTTCTCACAA
CCGTGGGCCTCGTTGCCGCTGACATCTGCGTTGATCCCCGCCAAGTGAGT
CCCGCCTGCACATACCCAAGCGCATTCCCTTGCATGCAGCATATGCTTCA
CACTCTCGAGTACAAGTACTTTGACCGAATACGCCGTGCAAGCAGCATGG
GGCCACGGTGCCTGCTGCCGATACCTTCTGCATTTGTTGTGGCAGCGGTG
ATCTTGCGTGATTTTTTCAATGTTGTAAGCACTGATTATTGTGCAGTGTC
TCAACACACAGCGCCAGGAGCAGACTTACAATGCAATCAAGCAAGGTTGC
ATGACCTATGCGGATGAGAACAAGGTTGCTGCAGCCCCTGCCGCTGCGCT
CATGGCTGACACTGCTGCCACTTCTCTGCTAAGCTGTCCTGAAACCTAAG
CTGTCCAGCATACTTGAGAATTATTTACGTTGACCTACCTGGCAGCTGAA
AGTAAACCTTCAGGATTAATCTTGAAAGCAACGGATGGTGCGTTTGTGTT
GTGTCTTGCGTCAAATGCATTGCATACAGTGATACTGGCATGGCTATTGT
GGGCATGGCGTATAATACTCACATTGGGTCACAAGGCATTTGTGCCTGCC
CTGCATTCTCAACTTGACACCAGTAGAGCAGATGTAGACTCATAGCAAAA
ACGTGCCACCAGCTCAGAGGGAGGCTCGTCAAGGTTATTTTTAAAAGGGC
TGTGCCAAAACATCAACAACATTTGGATGGCCCCATTTTTTGTTATGCCG
TCCATCAAGTCCTGTAAGTGTTTGAGTACTTGTGTGTTATACGTGACCCT
CATGGCCTGCTTCTTCCGCTCTGCCTTGCGCCCCGCGCGCAGAACATAGT
GCGCGCCTTCACCAATGACGTCATAGCGGACACAGCGCGCTACTACGTCA
CATGCGATGGCACCAACGTTTTTGCACAGCTCATTGAGCAGGGCTTCCTC
TTCACATTTATAGCCAAGGGGGAGCTGAACAGCGCCGATTTCAAGGACTA
TGCGCAGCAGTGCCCCGCGCTGGCTCCCGCCAAAGACCGGGTGAGTTCAA
CCTTGAAGTAGTACCTTGGTCTGGAGGTGCTGCGGGCTGAAGCAGTGTGG
AGCAGCGCTGAACGTTGCAATGCTATGCTGCTTGCAATCGGCGCAAGCTG
CTCAGTAACATGGACAACCGCAATGAACATATGCTGCACCCTGAGAATGC
GCTCACGCATGTAAACGCAACAATTCACCTCAGCACTTTCATCGTGCCCA
TGGGACCCATGCTGCGTGTCCGACTGACTCGTTGCACCCACCACAGCGTC
CCCTGGCCACAAACCCTGTGCACCCCCCCTTGACCCCTGCCCTGGCTGAC
TGGCCCCCCTTGCTGTCTCACACCCCCTTGCTCACGACAGGTCGCCGCCG
CGCTGGCAAACATCAAGGACGAGACGGGCTATCTCTCCAAGGAGATCCGC
TGCCGCGAGATCAACCCCATGTATGTGCAGGGGGTGGAGGGCGCCATCTG
CACTAGCGGCACGCAAGACATACTCATGGCCATGGTCGGCTTTGTCCTGG
TGGGCATATTCCTGGCACTCGTTTCGACGTGCTTCATCTGGCTGATGAGG
CACGTGGGCTACGCCGAGAGCGACAGGCTCGGCATAGACTTCAACTCCTC
CAAGCTGCTGCAACGGAAAACTTCAACTATGGCACTCCCCCCGCACACGG
CGCACTCTCGGCATGTGTCGGCGGCGGAGACGGGCGTCTCGTCACGGCGC
TAG
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Coding sequence (CDS) from alignment at Contig_67:486136..487988-

>mRNA_10388 ID=mRNA_10388|Name=jgi.p|Trimin1|169911|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=705bp|location=Sequence derived from alignment at Contig_67:486136..487988- (Tribonema minus UTEX_B_3156 )
CGCCAGGTGAAGCGGAGCCTGAGGTTCAGCAAGTGGGTGCTACTGCCAGT
GTCCATCCTCCTGGTAGTGTGCAGCTGGGTGTCGGCTGGACTTCTCACAA
CCGTGGGCCTCGTTGCCGCTGACATCTGCGTTGATCCCCGCCAAAACATA
GTGCGCGCCTTCACCAATGACGTCATAGCGGACACAGCGCGCTACTACGT
CACATGCGATGGCACCAACGTTTTTGCACAGCTCATTGAGCAGGGCTTCC
TCTTCACATTTATAGCCAAGGGGGAGCTGAACAGCGCCGATTTCAAGGAC
TATGCGCAGCAGTGCCCCGCGCTGGCTCCCGCCAAAGACCGGGTCGCCGC
CGCGCTGGCAAACATCAAGGACGAGACGGGCTATCTCTCCAAGGAGATCC
GCTGCCGCGAGATCAACCCCATGTATGTGCAGGGGGTGGAGGGCGCCATC
TGCACTAGCGGCACGCAAGACATACTCATGGCCATGGTCGGCTTTGTCCT
GGTGGGCATATTCCTGGCACTCGTTTCGACGTGCTTCATCTGGCTGATGA
GGCACGTGGGCTACGCCGAGAGCGACAGGCTCGGCATAGACTTCAACTCC
TCCAAGCTGCTGCAACGGAAAACTTCAACTATGGCACTCCCCCCGCACAC
GGCGCACTCTCGGCATGTGTCGGCGGCGGAGACGGGCGTCTCGTCACGGC
GCTAG
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