mRNA_10377 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169820
Unique NamemRNA_10377
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169820 vs. uniprot
Match: A0A836CB09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB09_9STRA)

HSP 1 Score: 305 bits (782), Expect = 5.510e-105
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 
Query:    1 MVKFVALAAKLEESVDLNVNKVLQYHAIISIVVGGIAFFLPHGLANTLYGGELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELPTEQVKSTS 471
            MVKFVALAAKLEESVDLNVNKVLQYHAIISIVVGGIAFFLPHGLANTLYGGELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELPTEQVKSTS
Sbjct:    1 MVKFVALAAKLEESVDLNVNKVLQYHAIISIVVGGIAFFLPHGLANTLYGGELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELPTEQVKSTS 157
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BLAST of jgi.p|Trimin1|169820 vs. uniprot
Match: A0A397DN74_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DN74_9STRA)

HSP 1 Score: 122 bits (306), Expect = 8.260e-33
Identity = 65/125 (52.00%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:   76 HAIISIVVGGIAFFLPHGLANTLYGG-ELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELP 447
            HA I+I++GG  F LPH LA ++ GG E  H +HEVVR+YGALTLAQGWL   TR  GD  V++   +AY + + LQ LAL RAQ +SP+SH+ LN   I + A L   Y Y    +TIK FELP
Sbjct:   15 HACIAIIIGGACFLLPHSLAVSVLGGSEYGHLVHEVVRLYGALTLAQGWLVWKTRLVGDGLVRKTFCQAYCLCFTLQALALVRAQVSSPESHSVLNWINIIVLAGLGTAYGYFIVFKTIKAFELP 139
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BLAST of jgi.p|Trimin1|169820 vs. uniprot
Match: A0A024TE78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TE78_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.570e-31
Identity = 64/125 (51.20%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:   76 HAIISIVVGGIAFFLPHGLANTLYGG-ELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELP 447
            HA I+IV+GG    LPH LA +  G  E  H +HEVVR+YGALTLAQGWL   TR  GDA +++   +AY + + LQ  AL RAQ +SP+SH+ LN   I + A+L A Y Y    +TIK+FELP
Sbjct:   34 HAGIAIVIGGSCLVLPHSLAMSALGASEYGHLVHEVVRLYGALTLAQGWLVWKTRLVGDALIRKTFCQAYCLCFLLQAAALVRAQVSSPESHSVLNWVNIIVLAALGAAYGYFVVFKTIKVFELP 158
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BLAST of jgi.p|Trimin1|169820 vs. uniprot
Match: A0A6G0WDL0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDL0_9STRA)

HSP 1 Score: 114 bits (286), Expect = 8.730e-30
Identity = 60/133 (45.11%), Postives = 84/133 (63.16%), Query Frame = 1 
Query:   52 NVNKVLQYHAIISIVVGGIAFFLPHGLA-NTLYGGELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELP 447
            +++ +   HA ISIV+G     LPH LA + L   E +H +HE+VR+YGALTLAQGWL   TR  GD  +++   +AY + + LQ +A+ RAQ +SP+SH+ LN   I + A L   Y Y  + +TIK FELP
Sbjct:    7 HLDALFVVHAGISIVIGAACLLLPHSLAMSALKTTEYSHLVHEMVRLYGALTLAQGWLVWKTRLVGDGLIRKTFCQAYCLCFSLQAIAMLRAQISSPESHSVLNWINILVLAGLGGAYGYFLFFKTIKAFELP 139
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BLAST of jgi.p|Trimin1|169820 vs. uniprot
Match: A0A485KNP7_9STRA (Aste57867_9606 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNP7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.700e-29
Identity = 60/133 (45.11%), Postives = 82/133 (61.65%), Query Frame = 1 
Query:   52 NVNKVLQYHAIISIVVGGIAFFLPHGLA-NTLYGGELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELP 447
            +++ +   HA IS ++GG  F LPH LA   L   + +H  HE+VR+YGALTLAQGWL   TR  GD  +++   +AY + + LQ LA+ RAQ +SP+SH+ LN   I + A L   Y Y    +TIK FELP
Sbjct:   10 HLDALFVVHAAISTLIGGACFLLPHSLAMEALRTPDYSHLAHEMVRLYGALTLAQGWLVWNTRLVGDGLIRKTFCQAYCLCFSLQALAMLRAQVSSPESHSVLNWLNIFILAGLGIAYGYFLAFKTIKAFELP 142
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BLAST of jgi.p|Trimin1|169820 vs. uniprot
Match: A0A1V9ZH25_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZH25_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.210e-28
Identity = 64/133 (48.12%), Postives = 82/133 (61.65%), Query Frame = 1 
Query:   76 HAIISIVVGGIAFFLPHGLANTLYGGELTHHL-HEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELPTEQVKSTS 471
            HA IS V+GG    LPH LA +     L  HL HE+VR+YGALT AQGWL   TR   D  V++   +AY + + LQ LA+ RAQ +SP+SH+ LN   I + A L A Y Y    +T+K FELP+  +KSTS
Sbjct:   15 HATISTVIGGACLLLPHSLAMSALQTPLYGHLVHEMVRLYGALTAAQGWLVWKTRLVSDPIVRKTFCQAYCLCFSLQSLAMLRAQVSSPESHSMLNWINILVLAGLGAAYGYFLLFKTVKAFELPS--MKSTS 145
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BLAST of jgi.p|Trimin1|169820 vs. uniprot
Match: A0A8K1C467_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C467_PYTOL)

HSP 1 Score: 112 bits (281), Expect = 1.360e-28
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 1 
Query:   52 NVNKVLQYHAIISIVVGGIAFFLPHGLANTLYG-GELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELP 447
            +++++   HA+ SI  G + FF PH   + + G    TH  HE +R+YGALTLAQGWL   TR   DA V+R   +AYA+ + LQ  AL RAQ T+P+SH+ L+   I +  SL   Y Y    +TIK FELP
Sbjct:   36 HLDQLFSAHAVFSIATGALCFFTPHSQLSPILGDANNTHFAHEFIRLYGALTLAQGWLVWRTRLVSDAMVRRTFCQAYAICFLLQAFALIRAQLTAPESHSVLHWFYIFILGSLGTGYGYFLTYKTIKAFELP 168
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BLAST of jgi.p|Trimin1|169820 vs. uniprot
Match: A0A067D0E8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D0E8_SAPPC)

HSP 1 Score: 111 bits (278), Expect = 1.670e-28
Identity = 61/126 (48.41%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:   76 HAIISIVVGGIAFFLPHGLANT-LYGGELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELPT 450
            HA ISIV+G     LPH LA   L   +  H +HE+VR+YGALTLAQGWL   TR  GDA +++   +AY + + LQ LA+ RAQ  SP+SH+ LN   I + A L A Y Y    +T K FELP+
Sbjct:   15 HASISIVIGSACLLLPHSLAMAALQTPQYGHLVHEMVRLYGALTLAQGWLVWKTRLVGDALIRKTFCQAYCLCFSLQSLAMFRAQVASPESHSLLNWINILVLAGLGAAYGYFLAFKTAKAFELPS 140
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BLAST of jgi.p|Trimin1|169820 vs. uniprot
Match: K3XC85_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XC85_GLOUD)

HSP 1 Score: 111 bits (278), Expect = 1.770e-28
Identity = 59/143 (41.26%), Postives = 84/143 (58.74%), Query Frame = 1 
Query:   37 ESVDLNVNKVLQYHAIISIVVGGIAFFLPHGLANTLYG-GELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELPTEQVK 462
            + V   ++++   HA+ +I+ G   FF PH L + + G    TH  HE VR+YGALTLAQGWL   TR   DA ++R   +AY + + LQ LAL RAQ ++P++H++L+   I +   L   Y Y    +TIK FELP  Q K
Sbjct:    2 QEVRRQLDQLFAAHAVFAILSGVFCFFTPHSLLSPVLGDANNTHFAHEFVRLYGALTLAQGWLVWRTRLVSDALIRRTFCQAYCICFSLQALALVRAQLSAPENHSSLHWLNILVLGGLGGAYGYFLVFKTIKAFELPGAQSK 144
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BLAST of jgi.p|Trimin1|169820 vs. uniprot
Match: W2G8X2_PHYPR (Uncharacterized protein n=15 Tax=Peronosporaceae TaxID=4777 RepID=W2G8X2_PHYPR)

HSP 1 Score: 110 bits (276), Expect = 3.440e-28
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 1 
Query:   37 ESVDLNVNKVLQYHAIISIVVGGIAFFLPHGLANTLYG-GELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGLQMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELP 447
            ++V   ++++   H +I++V G + F  PH L   + G G  TH  HE VR+YGALTLAQGW+   TR   DA ++R   +AY + + LQ +AL RAQ  SP+SH+ L+   I L   L   Y Y    +TIK FELP
Sbjct:    2 QTVRRQLDRLFAVHMVIAVVTGALCFLTPHSLMAPMLGDGNNTHMAHEFVRLYGALTLAQGWMVWRTRLVSDALIRRTFCQAYCICFLLQAVALLRAQIASPESHSMLHWINILLLGGLGCAYGYFLVFKTIKAFELP 139
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169820 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A836CB09_9STRA5.510e-105100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A397DN74_9STRA8.260e-3352.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TE78_9STRA6.570e-3151.20Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0WDL0_9STRA8.730e-3045.11Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KNP7_9STRA2.700e-2945.11Aste57867_9606 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZH25_9STRA1.210e-2848.12Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A8K1C467_PYTOL1.360e-2844.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067D0E8_SAPPC1.670e-2848.41Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
K3XC85_GLOUD1.770e-2841.26Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
W2G8X2_PHYPR3.440e-2842.03Uncharacterized protein n=15 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_67contigContig_67:383087..384820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169820|e_gw1.67.129.1
Max annot lvl2759|Eukaryota
EggNOG OGs2AWIT@1|root,2RZYW@2759|Eukaryota
Evalue1.08e-31
Seed ortholog157072.XP_008879518.1
Hectar predicted targeting categoryother localisation
TranscriptId170142
TrackFilteredModels1
ProteinId169820
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169820gene_10377Tribonema minus UTEX_B_3156 geneContig_67 383087..384820 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10377_1exon_10377_1Tribonema minus UTEX_B_3156 exonContig_67 383087..383299 +
exon_10377_2exon_10377_2Tribonema minus UTEX_B_3156 exonContig_67 384560..384820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10377CDS_10377Tribonema minus UTEX_B_3156 CDSContig_67 383087..383299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169820Trimin1|169820|e_gw1.67.129.1Tribonema minus UTEX_B_3156 polypeptideContig_67 383087..384820 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10377 ID=mRNA_10377|Name=jgi.p|Trimin1|169820|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_67:383087..384820+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAAAATTCGTAGCGCTAGCAGCCAAACTGGAGGAGAGCGTAGACCT
GAATGTCAACAAGGTGCTGCAGTACCATGCAATCATATCCATCGTTGTGG
GGGGAATAGCTTTCTTCCTGCCGCACGGGCTGGCGAACACGCTTTACGGA
GGAGAGCTCACGCACCATCTGCACGAGGTGGTCAGGATGTACGGAGCCCT
CACGCTTGCTCAGGGCTGGCTGACGCACGCGACGCGCCAGGCGGGCGATG
CGCGCGTGAAGCGCGCCATGAGCGAGGCCTACGCCGTCTCCTACGGGCTG
CAGATGCTGGCGCTCGCGCGCGCGCAGTGGACCAGCCCCGACAGCCACAC
TGCGCTCAACATTGCGGGCATTGCGCTGTTTGCCAGCCTCAGCGCGTTCT
ACGCGTACGTGCGCTGGCGCCGCACCATCAAGATCTTTGAGCTGCCCACG
GAGCAGGTCAAGTCCACGTCGTGA
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protein sequence of jgi.p|Trimin1|169820

>Trimin1|169820|e_gw1.67.129.1 ID=Trimin1|169820|e_gw1.67.129.1|Name=jgi.p|Trimin1|169820|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp
MVKFVALAAKLEESVDLNVNKVLQYHAIISIVVGGIAFFLPHGLANTLYG
GELTHHLHEVVRMYGALTLAQGWLTHATRQAGDARVKRAMSEAYAVSYGL
QMLALARAQWTSPDSHTALNIAGIALFASLSAFYAYVRWRRTIKIFELPT
EQVKSTS*
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mRNA from alignment at Contig_67:383087..384820+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10377 ID=mRNA_10377|Name=jgi.p|Trimin1|169820|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1734bp|location=Sequence derived from alignment at Contig_67:383087..384820+ (Tribonema minus UTEX_B_3156 )
ATGGTAAAATTCGTAGCGCTAGCAGCCAAACTGGAGGAGAGCGTAGACCT
GAATGTCAACAAGGTGCTGCAGTACCATGCAATCATATCCATCGTTGTGG
GGGGAATAGCTTTCTTCCTGCCGCACGGGCTGGCGAACACGCTTTACGGA
GGAGAGCTCACGCACCATCTGCACGAGGTGGTCAGGATGTACGGAGCCCT
CACGCTTGCTCAGGTAAAAGGCGTGCTTTCCGTGCTGATCGATCTGTATC
TTTACTGTTGCATACAGCCTGACCAAAGCCTCCCTTGAGTTGGCGAATTG
GATCGCCCAATTTTATATTCTTCGAAAGCAAAGTAGATGCACGTGTGAGG
ACCACATGCGCACCGATGACAGTTGCTGTCTGCAGTCGCGCAGCTGGCGC
GCCTACAAGCTCACAGTCATCAAGATTCGAGCGCCTCATGCAGAATGCGC
ATGGTGCTGACATTGTTGATCTAGAGGTTCGGCTTTGTCATGTGCCCGCC
TTCACGTGCATTCATCCAAGTGCGCCTGTACTCAGGCCCCACTGGTGTGC
ATAATTTTCCAAATACAGAAACGCTTAAGGTGCTGCAAACTACATGAAAG
CATTGACGCTAGCCCAAAGATATCCGCTCACTCATTCTGATCACAACAAG
ACACCCCTAGCAGCTGATGAAGGACATGACATCAGCCGCCCTTGTGCCCT
CCACCCTCGCATTTCTTCTGTCCATCAGTCAGCGCATACGAGTGCACACA
TTGCAGGGCGTCGATGCCTGTGCTGCTGCACTGCGCTGCATGACACGCAG
TGCACTGATGCCGTTGCCAGTGCGACAGCGGCCTTTGCTGTCGCTGTCTT
CCACGGGGCTGGCTGATGCAAACAGGGGGTCTACTAGCCTAAGGCTAAAG
TGCACTGACTTAATAGGGACGCTGAAGAGTTCATACTGTGCTCTCAAGGG
TTTCCTCGTTCGCACCGGCTGTCACCTGCATGCAAGGTGCTGACGCTGTG
CACGCTGTTTCAGCGCATTCCACCTCATGTCGCATGTGATGTGCCAACGA
TCCTTGCGCGCATGCAGCACGTCGTGGGCGAGACACAGCACTGACATCAC
CCCTTCCTTTTCGGCTTGAACTCTCTTGAAAGTGCGCGTCGTCGATCCAT
ACTCATGCCATCACGGCTGCCGGCGTAATGAATTTGGCATGTCAGGCTGA
CAGTGCATGCATGTAGCGCAGCACGTCATAAACGACAGTCAAACGTTGAG
GAATGATGTCAACATGCTGGTAAACACTCTGATGCAGCAGCAGCAGCAGC
TGCGGCACACAAAAATACTGGTTGCGATGCGCTCACACGTCATGGCCATA
CCCCTTTTGCTCCTCACCCCTTTCTCCCCACGCCTCCTCCTTCCCACCTC
CCTCTGTCTATGAAGAGCATCACCTGAACAAATGTACCTGTGCTGGCCCG
TGCGCTCTGCCCGCCTCTTGCAGGGCTGGCTGACGCACGCGACGCGCCAG
GCGGGCGATGCGCGCGTGAAGCGCGCCATGAGCGAGGCCTACGCCGTCTC
CTACGGGCTGCAGATGCTGGCGCTCGCGCGCGCGCAGTGGACCAGCCCCG
ACAGCCACACTGCGCTCAACATTGCGGGCATTGCGCTGTTTGCCAGCCTC
AGCGCGTTCTACGCGTACGTGCGCTGGCGCCGCACCATCAAGATCTTTGA
GCTGCCCACGGAGCAGGTCAAGTCCACGTCGTGA
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Coding sequence (CDS) from alignment at Contig_67:383087..384820+

>mRNA_10377 ID=mRNA_10377|Name=jgi.p|Trimin1|169820|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=474bp|location=Sequence derived from alignment at Contig_67:383087..384820+ (Tribonema minus UTEX_B_3156 )
ATGGTAAAATTCGTAGCGCTAGCAGCCAAACTGGAGGAGAGCGTAGACCT
GAATGTCAACAAGGTGCTGCAGTACCATGCAATCATATCCATCGTTGTGG
GGGGAATAGCTTTCTTCCTGCCGCACGGGCTGGCGAACACGCTTTACGGA
GGAGAGCTCACGCACCATCTGCACGAGGTGGTCAGGATGTACGGAGCCCT
CACGCTTGCTCAGGGCTGGCTGACGCACGCGACGCGCCAGGCGGGCGATG
CGCGCGTGAAGCGCGCCATGAGCGAGGCCTACGCCGTCTCCTACGGGCTG
CAGATGCTGGCGCTCGCGCGCGCGCAGTGGACCAGCCCCGACAGCCACAC
TGCGCTCAACATTGCGGGCATTGCGCTGTTTGCCAGCCTCAGCGCGTTCT
ACGCGTACGTGCGCTGGCGCCGCACCATCAAGATCTTTGAGCTGCCCACG
GAGCAGGTCAAGTCCACGTCGTGA
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