mRNA_10352 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136002
Unique NamemRNA_10352
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A835YLT9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLT9_9STRA)

HSP 1 Score: 358 bits (918), Expect = 9.380e-125
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1
Query:    1 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561
            RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE
Sbjct:    1 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 187          
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A8J2WWQ5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWQ5_9STRA)

HSP 1 Score: 218 bits (555), Expect = 2.830e-62
Identity = 103/187 (55.08%), Postives = 141/187 (75.40%), Query Frame = 1
Query:    1 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561
            R+SE L+VELLKL T+++E L  E+   R++L+KF W+++K D        AYVN+C+F++ Y TP  ++LQVYVALLRT QPE +ELV+VALDIL+PALP+RL   D +K +KWT+KIMYEE H +  L+H+W +VVRHP +F+PYR QF+ Q+V  L RLGL  NCP E R L+VAL+D+++ WE
Sbjct: 2081 RYSEALRVELLKLTTVLIEHLGPELVEHRKDLIKFAWNHLKSDDSLSKQW-AYVNVCRFVATYETPPKIILQVYVALLRTFQPEARELVKVALDILIPALPKRLPINDFVKAVKWTKKIMYEEGHALAQLVHMWQLVVRHPGLFFPYRSQFMPQMVNSLNRLGLPPNCPVENRQLAVALADLIMNWE 2266          
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A6H5KAF7_9PHAE (FAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF7_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 5.620e-58
Identity = 104/187 (55.61%), Postives = 135/187 (72.19%), Query Frame = 1
Query:    1 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561
            ++ E L+VELLKL  L++EF+ +E+   R+EL+KF W+NIK +        AYVN+C+FI  Y TP  ++LQVYV LLR  QPEVKELV  ALDILVPALP RL   + +K IKWT+KIMYEE H +  LIH+WHM+VRHPA+FY  R  F+ Q+V  L RLGL  NCP E R L+V+L+D+++ WE
Sbjct: 1275 KYPEGLRVELLKLGALLIEFMHKELLDHRKELIKFAWNNIKVEDSGKHW--AYVNVCRFICAYDTPPKIILQVYVQLLRCIQPEVKELVHAALDILVPALPFRLTTGEFMKAIKWTKKIMYEEGHALPQLIHMWHMIVRHPALFYSCRSHFVGQMVNSLSRLGLPPNCPRENRQLAVSLADLMIKWE 1459          
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: D8LFI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 5.640e-58
Identity = 104/187 (55.61%), Postives = 135/187 (72.19%), Query Frame = 1
Query:    1 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561
            ++ E L+VELLKL  L++EF+ +E+   R+EL+KF W+NIK +        AYVN+C+FI  Y TP  ++LQVYV LLR  QPEVKELV  ALDILVPALP RL   + +K IKWT+KIMYEE H +  LIH+WHM+VRHPA+FY  R  F+ Q+V  L RLGL  NCP E R L+V+L+D+++ WE
Sbjct: 2306 KYPEGLRVELLKLGALLIEFMHKELLDHRKELIKFAWNNIKVEDSGKHW--AYVNVCRFICAYDTPPKIILQVYVQLLRCIQPEVKELVHAALDILVPALPFRLTTGEFMKAIKWTKKIMYEEGHALPQLIHMWHMIVRHPALFYSCRSHFVGQMVNSLSRLGLPPNCPRENRQLAVSLADLMIKWE 2490          
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A7R9U8N6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8N6_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.070e-55
Identity = 97/186 (52.15%), Postives = 133/186 (71.51%), Query Frame = 1
Query:    4 HSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561
            +SEPL++ELLKL TL++E L  E+   RREL+KF W+++K D        AYVN+C+FI++Y TP  ++LQVYVALLRT QP+ + LVR ALDILVPAL  RL   D  K ++WTRKIMYE+ H +  L+H+WH++ RHP +FY YR QF+ Q+V  L R+GL  +   E R L++ L D++L+WE
Sbjct: 2080 YSEPLKIELLKLATLLIEHLGDELIDHRRELIKFAWNHLKADDSFSKKW-AYVNVCRFIAVYETPAKIILQVYVALLRTFQPDDRGLVRAALDILVPALQDRLDADDFYKSLRWTRKIMYEDGHTLPQLVHMWHLITRHPTLFYSYRVQFVPQMVNSLNRVGLPPSTHIENRHLAIGLVDLILSWE 2264          
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: F0YHH3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH3_AURAN)

HSP 1 Score: 195 bits (496), Expect = 2.440e-54
Identity = 99/186 (53.23%), Postives = 130/186 (69.89%), Query Frame = 1
Query:    4 HSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561
            +SE L+VELLKL T+++E L QE+   R++L+KF W+++K D        AYVN+  +             VYVALLRT QPE +ELV+VALDIL+PALP+RL   D +K IKWT+KIMYEE H +  L+H+W +VVRHP +FYPYR QF+ Q+V  L RLGL  NCP E R L+VAL+D++L WE
Sbjct: 2814 YSEALRVELLKLTTVLIEHLGQELVEHRKDLIKFAWNHLKSDDSLSKQW-AYVNVYHW-------------VYVALLRTFQPEARELVKVALDILIPALPKRLPMADFIKAIKWTKKIMYEEGHALAQLVHMWQLVVRHPTLFYPYRSQFMPQMVNSLNRLGLPPNCPVENRQLAVALADLILNWE 2985          
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A7S1B6U3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6U3_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.270e-54
Identity = 96/185 (51.89%), Postives = 128/185 (69.19%), Query Frame = 1
Query:    7 SEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561
            SE   VELLK+ TL ++F+ +EM   R+EL+KF W+++K +        AY+N+C+FI  Y TP  ++LQVYVALLRTHQPE ++ V  ALDIL+PAL RRL   D +K IKWT+K+MYEE H +  L HIW ++ RHP IFY YR QF+  +V  L RLGL  N P E R LS+ L+ +++AWE
Sbjct:  852 SERFHVELLKMSTLFIQFMGKEMMEYRKELIKFAWNHLKSEDSISKHW-AYINVCRFIDTYETPSKIILQVYVALLRTHQPEARDSVTSALDILIPALRRRLPVADFIKAIKWTKKVMYEEGHALQQLTHIWLVIARHPHIFYDYRSQFMTHMVNSLNRLGLPSNSPVETRILSLDLAQLIIAWE 1035          
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A7S0HLC0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HLC0_9CRYP)

HSP 1 Score: 179 bits (454), Expect = 6.060e-53
Identity = 90/188 (47.87%), Postives = 128/188 (68.09%), Query Frame = 1
Query:    4 HSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLK--CIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561
            + E L +ELL+L TL++  L   +   R+EL+KF WD +K+D        AYVN+C+FI  Y  P  ++LQVYVALLR  QPE + L++ ALDIL PALP+RL PQD      I++T+KI+ EE H + HLIHIWH +VRH ++FY  R QF+ Q+V  L R+G+ ++CP E R L+V L+++V+ W+
Sbjct:    5 YDEALHIELLQLATLLIRHLKTSLVSHRKELIKFAWDRLKRDETTSKQW-AYVNVCRFIEAYDAPHKIILQVYVALLRAFQPEQRPLLKQALDILTPALPKRLPPQDHKYPIWIRYTKKIIVEEGHSLPHLIHIWHFLVRHASLFYTSRAQFVPQMVNSLNRIGMANSCPPENRKLAVDLAELVITWD 191          
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A7S0MYR2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MYR2_9CRYP)

HSP 1 Score: 183 bits (465), Expect = 4.240e-52
Identity = 90/188 (47.87%), Postives = 130/188 (69.15%), Query Frame = 1
Query:    4 HSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLK--CIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561
            + EP  +ELL+L TL+++ L +E+   R+EL+KF WD +KKD        AYVN+C+FI  Y  P  ++LQVYVALLR +QPE + L++ ALDIL PALP+RL P +      I++T+KI+ EE H + HLIHIWH +VRH  +FY  R QF+ Q+V  L R+G+ ++CP E R L++ L+D+V+ W+
Sbjct:  316 YEEPFHIELLQLATLLIKHLKKELVNHRKELIKFAWDRLKKDESTSKQW-AYVNVCRFIEAYDAPHKIILQVYVALLRAYQPEQRTLLKQALDILTPALPKRLPPAEHKYPIWIRYTKKIIVEEGHSLPHLIHIWHFLVRHADLFYSSRAQFVPQMVNSLNRIGMANSCPVENRKLAIDLADLVITWD 502          
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A7S0EQU9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EQU9_9EUKA)

HSP 1 Score: 170 bits (431), Expect = 1.180e-50
Identity = 86/179 (48.04%), Postives = 122/179 (68.16%), Query Frame = 1
Query:   31 LKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRL--GPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561
            LKL TL++E + +++   R+EL+KF W+++K +        AYVN+C+FI +Y TP  ++LQVYVALLRT QP+ + LV+ ALDIL PALP+RL  G       IKWT+KI+ EE H +  LIHIW +VVRHP +F+    QF+ Q+V  L R+GL  NC  E R L+V L+ ++++WE
Sbjct:    1 LKLATLLIEHVSEQLVEHRKELIKFAWNHLKSEDTQSKQC-AYVNVCRFIQVYDTPPKIILQVYVALLRTFQPDARTLVKQALDILTPALPKRLPAGDHKYPTWIKWTKKIIVEEGHSLPQLIHIWQLVVRHPNLFFSSCAQFVPQMVNSLNRIGLSPNCSIENRKLAVELAQLIISWE 178          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLT9_9STRA9.380e-125100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A8J2WWQ5_9STRA2.830e-6255.08Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5KAF7_9PHAE5.620e-5855.61FAT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFI6_ECTSI5.640e-5855.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U8N6_9STRA1.070e-5552.15Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
F0YHH3_AURAN2.440e-5453.23Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1B6U3_9STRA3.270e-5451.89Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S0HLC0_9CRYP6.060e-5347.87Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S0MYR2_9CRYP4.240e-5247.87Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0EQU9_9EUKA1.180e-5048.04Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_67contigContig_67:130056..131254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136002|gw1.67.47.1
BRITEko00000,ko00001,ko01001,ko03021,ko03036
KEGG Pathwayko05166,map05166
KEGG koko:K08874
GOsGO:0000123,GO:0000166,GO:0003674,GO:0003712,GO:0003824,GO:0004402,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006468,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016773,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030554,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0035267,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1990234,GO:2001141
Descriptioninternal peptidyl-lysine acetylation
COG categoryBDLTU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5032@1|root,KOG0889@2759|Eukaryota
Evalue9.25e-59
Seed ortholog2880.D8LFI6
Hectar predicted targeting categoryother localisation
TranscriptId136324
TrackFilteredModels1
ProteinId136002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136002gene_10352Tribonema minus UTEX_B_3156 geneContig_67 130056..131254 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10352_1exon_10352_1Tribonema minus UTEX_B_3156 exonContig_67 130056..130376 +
exon_10352_2exon_10352_2Tribonema minus UTEX_B_3156 exonContig_67 131015..131254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10352CDS_10352Tribonema minus UTEX_B_3156 CDSContig_67 130056..130376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136002Trimin1|136002|gw1.67.47.1Tribonema minus UTEX_B_3156 polypeptideContig_67 130056..131254 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10352 ID=mRNA_10352|Name=jgi.p|Trimin1|136002|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=561bp|location=Sequence derived from alignment at Contig_67:130056..131254+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGCACAGCGAGCCGCTGCAGGTGGAGCTGCTGAAGCTGATGACGCTCAT
GATGGAGTTCCTGCCGCAGGAGATGGCGGGGAGTCGCCGCGAGCTGTTGA
AGTTCGGCTGGGACAACATCAAGAAGGACTGGGACCTCGTGTCCAAGCAC
TGGGCGTACGTGAACCTGTGCAAGTTCATCTCCATGTACTCGACGCCTTT
GTTGCTGGTGCTGCAGGTCTATGTCGCGCTCCTGCGTACACACCAGCCAG
AAGTGAAGGAGCTAGTGCGCGTGGCGTTGGACATCCTTGTGCCCGCTCTG
CCGCGCCGCCTCGGGCCCCAGGACATGCTGAAGTGCATCAAGTGGACGCG
CAAGATCATGTACGAGGAGAGCCACATGATGACGCACCTCATACACATCT
GGCACATGGTGGTGCGCCACCCCGCCATCTTCTACCCCTACCGCGGCCAG
TTCCTACAGCAAGTGGTGACGCACCTGCCGCGCCTGGGACTGCAGCACAA
CTGCCCGTTCGAGCAGCGCGCACTGTCGGTGGCGCTGTCCGATGTGGTGC
TGGCGTGGGAG
back to top

protein sequence of jgi.p|Trimin1|136002

>Trimin1|136002|gw1.67.47.1 ID=Trimin1|136002|gw1.67.47.1|Name=jgi.p|Trimin1|136002|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=187bp
RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDWDLVSKH
WAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPAL
PRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQ
FLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE
back to top

mRNA from alignment at Contig_67:130056..131254+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10352 ID=mRNA_10352|Name=jgi.p|Trimin1|136002|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1199bp|location=Sequence derived from alignment at Contig_67:130056..131254+ (Tribonema minus UTEX_B_3156 )
AGGCACAGCGAGCCGCTGCAGGTGGAGCTGCTGAAGCTGATGACGCTCAT GATGGAGTTCCTGCCGCAGGAGATGGCGGGGAGTCGCCGCGAGCTGTTGA AGTTCGGCTGGGACAACATCAAGAAGGACTGGGACCTCGTGTCCAAGCAC TGGGCGTACGTGAACCTGTGCAAGTTCATCTCCATGTACTCGACGCCTTT GTTGCTGGTGCTGCAGGTCTATGTCGCGCTCCTGCGTACACACCAGCCAG AAGTGAAGGAGCTAGTGCGCGTGGCGTTGGACATCCTTGTGCCCGCTCTG CCGCGCCGCCTCGGGCCCCAGGTGAATACTTGAAGTACGCCTTGCGGTAG CTGCGGTTGTTTGCTTTTACAGTTCATGCTGCACTGTCTACACTGTGTGA AGCCTGTCAACTTCAACGAAAGGGCTGCCCAGACAGTGAGTGCTTTGCCT TGTCAAGCTCATGATGCATTTTTTGTTTCTAAAATACAAGCACTGGCTAA AATCTACTAAAGCGGCGCTGTCTGCATATATGGCAGAGAATTTAACGGAG GTTATGCGGTGAGACAAGTACTTCAAGCACGAAGTACTAATGGCACAACG ACAGCCACATGCAGAGCTGCCATTCAATACCTGTTCACCGCGACTTCATC TGTCAATCGTCCAGTTGGACACTGCACCCGCTACTGTACCAGCATGTTGT TGATGCTGAGATGATTGCACCCATGTGCGCATGATGCGACCTAATACATG CTCACGCGCATCACGTCGCGCAACAACACTTGTACTTCACCAATACCCGC CACCCCACCTCATGCGGCGTTCCACGGCGCTGATGCGCGCCATGCAAAAC CTCAACCCCAACCCTACCCGTAACCCTGACCCTACCCCTACCCCTGACCC TAACCCTAATTCTAATTCTACGCCTAACCCTTCCCCTACCCCTAACCCCA ACCCTGAAGGACATGCTGAAGTGCATCAAGTGGACGCGCAAGATCATGTA CGAGGAGAGCCACATGATGACGCACCTCATACACATCTGGCACATGGTGG TGCGCCACCCCGCCATCTTCTACCCCTACCGCGGCCAGTTCCTACAGCAA GTGGTGACGCACCTGCCGCGCCTGGGACTGCAGCACAACTGCCCGTTCGA GCAGCGCGCACTGTCGGTGGCGCTGTCCGATGTGGTGCTGGCGTGGGAG
back to top

Coding sequence (CDS) from alignment at Contig_67:130056..131254+

>mRNA_10352 ID=mRNA_10352|Name=jgi.p|Trimin1|136002|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=561bp|location=Sequence derived from alignment at Contig_67:130056..131254+ (Tribonema minus UTEX_B_3156 )
AGGCACAGCGAGCCGCTGCAGGTGGAGCTGCTGAAGCTGATGACGCTCAT
GATGGAGTTCCTGCCGCAGGAGATGGCGGGGAGTCGCCGCGAGCTGTTGA
AGTTCGGCTGGGACAACATCAAGAAGGACTGGGACCTCGTGTCCAAGCAC
TGGGCGTACGTGAACCTGTGCAAGTTCATCTCCATGTACTCGACGCCTTT
GTTGCTGGTGCTGCAGGTCTATGTCGCGCTCCTGCGTACACACCAGCCAG
AAGTGAAGGAGCTAGTGCGCGTGGCGTTGGACATCCTTGTGCCCGCTCTG
CCGCGCCGCCTCGGGCCCCAGGACATGCTGAAGTGCATCAAGTGGACGCG
CAAGATCATGTACGAGGAGAGCCACATGATGACGCACCTCATACACATCT
GGCACATGGTGGTGCGCCACCCCGCCATCTTCTACCCCTACCGCGGCCAG
TTCCTACAGCAAGTGGTGACGCACCTGCCGCGCCTGGGACTGCAGCACAA
CTGCCCGTTCGAGCAGCGCGCACTGTCGGTGGCGCTGTCCGATGTGGTGC
TGGCGTGGGAG
back to top