mRNA_10352 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A835YLT9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLT9_9STRA) HSP 1 Score: 358 bits (918), Expect = 9.380e-125 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 Query: 1 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE Sbjct: 1 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 187
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A8J2WWQ5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWQ5_9STRA) HSP 1 Score: 218 bits (555), Expect = 2.830e-62 Identity = 103/187 (55.08%), Postives = 141/187 (75.40%), Query Frame = 1 Query: 1 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561 R+SE L+VELLKL T+++E L E+ R++L+KF W+++K D AYVN+C+F++ Y TP ++LQVYVALLRT QPE +ELV+VALDIL+PALP+RL D +K +KWT+KIMYEE H + L+H+W +VVRHP +F+PYR QF+ Q+V L RLGL NCP E R L+VAL+D+++ WE Sbjct: 2081 RYSEALRVELLKLTTVLIEHLGPELVEHRKDLIKFAWNHLKSDDSLSKQW-AYVNVCRFVATYETPPKIILQVYVALLRTFQPEARELVKVALDILIPALPKRLPINDFVKAVKWTKKIMYEEGHALAQLVHMWQLVVRHPGLFFPYRSQFMPQMVNSLNRLGLPPNCPVENRQLAVALADLIMNWE 2266
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A6H5KAF7_9PHAE (FAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF7_9PHAE) HSP 1 Score: 206 bits (523), Expect = 5.620e-58 Identity = 104/187 (55.61%), Postives = 135/187 (72.19%), Query Frame = 1 Query: 1 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561 ++ E L+VELLKL L++EF+ +E+ R+EL+KF W+NIK + AYVN+C+FI Y TP ++LQVYV LLR QPEVKELV ALDILVPALP RL + +K IKWT+KIMYEE H + LIH+WHM+VRHPA+FY R F+ Q+V L RLGL NCP E R L+V+L+D+++ WE Sbjct: 1275 KYPEGLRVELLKLGALLIEFMHKELLDHRKELIKFAWNNIKVEDSGKHW--AYVNVCRFICAYDTPPKIILQVYVQLLRCIQPEVKELVHAALDILVPALPFRLTTGEFMKAIKWTKKIMYEEGHALPQLIHMWHMIVRHPALFYSCRSHFVGQMVNSLSRLGLPPNCPRENRQLAVSLADLMIKWE 1459
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: D8LFI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI) HSP 1 Score: 206 bits (523), Expect = 5.640e-58 Identity = 104/187 (55.61%), Postives = 135/187 (72.19%), Query Frame = 1 Query: 1 RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561 ++ E L+VELLKL L++EF+ +E+ R+EL+KF W+NIK + AYVN+C+FI Y TP ++LQVYV LLR QPEVKELV ALDILVPALP RL + +K IKWT+KIMYEE H + LIH+WHM+VRHPA+FY R F+ Q+V L RLGL NCP E R L+V+L+D+++ WE Sbjct: 2306 KYPEGLRVELLKLGALLIEFMHKELLDHRKELIKFAWNNIKVEDSGKHW--AYVNVCRFICAYDTPPKIILQVYVQLLRCIQPEVKELVHAALDILVPALPFRLTTGEFMKAIKWTKKIMYEEGHALPQLIHMWHMIVRHPALFYSCRSHFVGQMVNSLSRLGLPPNCPRENRQLAVSLADLMIKWE 2490
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A7R9U8N6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8N6_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.070e-55 Identity = 97/186 (52.15%), Postives = 133/186 (71.51%), Query Frame = 1 Query: 4 HSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561 +SEPL++ELLKL TL++E L E+ RREL+KF W+++K D AYVN+C+FI++Y TP ++LQVYVALLRT QP+ + LVR ALDILVPAL RL D K ++WTRKIMYE+ H + L+H+WH++ RHP +FY YR QF+ Q+V L R+GL + E R L++ L D++L+WE Sbjct: 2080 YSEPLKIELLKLATLLIEHLGDELIDHRRELIKFAWNHLKADDSFSKKW-AYVNVCRFIAVYETPAKIILQVYVALLRTFQPDDRGLVRAALDILVPALQDRLDADDFYKSLRWTRKIMYEDGHTLPQLVHMWHLITRHPTLFYSYRVQFVPQMVNSLNRVGLPPSTHIENRHLAIGLVDLILSWE 2264
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: F0YHH3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH3_AURAN) HSP 1 Score: 195 bits (496), Expect = 2.440e-54 Identity = 99/186 (53.23%), Postives = 130/186 (69.89%), Query Frame = 1 Query: 4 HSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561 +SE L+VELLKL T+++E L QE+ R++L+KF W+++K D AYVN+ + VYVALLRT QPE +ELV+VALDIL+PALP+RL D +K IKWT+KIMYEE H + L+H+W +VVRHP +FYPYR QF+ Q+V L RLGL NCP E R L+VAL+D++L WE Sbjct: 2814 YSEALRVELLKLTTVLIEHLGQELVEHRKDLIKFAWNHLKSDDSLSKQW-AYVNVYHW-------------VYVALLRTFQPEARELVKVALDILIPALPKRLPMADFIKAIKWTKKIMYEEGHALAQLVHMWQLVVRHPTLFYPYRSQFMPQMVNSLNRLGLPPNCPVENRQLAVALADLILNWE 2985
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A7S1B6U3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6U3_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.270e-54 Identity = 96/185 (51.89%), Postives = 128/185 (69.19%), Query Frame = 1 Query: 7 SEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561 SE VELLK+ TL ++F+ +EM R+EL+KF W+++K + AY+N+C+FI Y TP ++LQVYVALLRTHQPE ++ V ALDIL+PAL RRL D +K IKWT+K+MYEE H + L HIW ++ RHP IFY YR QF+ +V L RLGL N P E R LS+ L+ +++AWE Sbjct: 852 SERFHVELLKMSTLFIQFMGKEMMEYRKELIKFAWNHLKSEDSISKHW-AYINVCRFIDTYETPSKIILQVYVALLRTHQPEARDSVTSALDILIPALRRRLPVADFIKAIKWTKKVMYEEGHALQQLTHIWLVIARHPHIFYDYRSQFMTHMVNSLNRLGLPSNSPVETRILSLDLAQLIIAWE 1035
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A7S0HLC0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HLC0_9CRYP) HSP 1 Score: 179 bits (454), Expect = 6.060e-53 Identity = 90/188 (47.87%), Postives = 128/188 (68.09%), Query Frame = 1 Query: 4 HSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLK--CIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561 + E L +ELL+L TL++ L + R+EL+KF WD +K+D AYVN+C+FI Y P ++LQVYVALLR QPE + L++ ALDIL PALP+RL PQD I++T+KI+ EE H + HLIHIWH +VRH ++FY R QF+ Q+V L R+G+ ++CP E R L+V L+++V+ W+ Sbjct: 5 YDEALHIELLQLATLLIRHLKTSLVSHRKELIKFAWDRLKRDETTSKQW-AYVNVCRFIEAYDAPHKIILQVYVALLRAFQPEQRPLLKQALDILTPALPKRLPPQDHKYPIWIRYTKKIIVEEGHSLPHLIHIWHFLVRHASLFYTSRAQFVPQMVNSLNRIGMANSCPPENRKLAVDLAELVITWD 191
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A7S0MYR2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MYR2_9CRYP) HSP 1 Score: 183 bits (465), Expect = 4.240e-52 Identity = 90/188 (47.87%), Postives = 130/188 (69.15%), Query Frame = 1 Query: 4 HSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRLGPQDMLK--CIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561 + EP +ELL+L TL+++ L +E+ R+EL+KF WD +KKD AYVN+C+FI Y P ++LQVYVALLR +QPE + L++ ALDIL PALP+RL P + I++T+KI+ EE H + HLIHIWH +VRH +FY R QF+ Q+V L R+G+ ++CP E R L++ L+D+V+ W+ Sbjct: 316 YEEPFHIELLQLATLLIKHLKKELVNHRKELIKFAWDRLKKDESTSKQW-AYVNVCRFIEAYDAPHKIILQVYVALLRAYQPEQRTLLKQALDILTPALPKRLPPAEHKYPIWIRYTKKIIVEEGHSLPHLIHIWHFLVRHADLFYSSRAQFVPQMVNSLNRIGMANSCPVENRKLAIDLADLVITWD 502
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Match: A0A7S0EQU9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EQU9_9EUKA) HSP 1 Score: 170 bits (431), Expect = 1.180e-50 Identity = 86/179 (48.04%), Postives = 122/179 (68.16%), Query Frame = 1 Query: 31 LKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDXXXXXXXXAYVNLCKFISMYSTPLLLVLQVYVALLRTHQPEVKELVRVALDILVPALPRRL--GPQDMLKCIKWTRKIMYEESHMMTHLIHIWHMVVRHPAIFYPYRGQFLQQVVTHLPRLGLQHNCPFEQRALSVALSDVVLAWE 561 LKL TL++E + +++ R+EL+KF W+++K + AYVN+C+FI +Y TP ++LQVYVALLRT QP+ + LV+ ALDIL PALP+RL G IKWT+KI+ EE H + LIHIW +VVRHP +F+ QF+ Q+V L R+GL NC E R L+V L+ ++++WE Sbjct: 1 LKLATLLIEHVSEQLVEHRKELIKFAWNHLKSEDTQSKQC-AYVNVCRFIQVYDTPPKIILQVYVALLRTFQPDARTLVKQALDILTPALPKRLPAGDHKYPTWIKWTKKIIVEEGHSLPQLIHIWQLVVRHPNLFFSSCAQFVPQMVNSLNRIGLSPNCSIENRKLAVELAQLIISWE 178 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136002 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10352 ID=mRNA_10352|Name=jgi.p|Trimin1|136002|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=561bp|location=Sequence derived from alignment at Contig_67:130056..131254+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGGCACAGCGAGCCGCTGCAGGTGGAGCTGCTGAAGCTGATGACGCTCATback to top protein sequence of jgi.p|Trimin1|136002 >Trimin1|136002|gw1.67.47.1 ID=Trimin1|136002|gw1.67.47.1|Name=jgi.p|Trimin1|136002|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=187bp RHSEPLQVELLKLMTLMMEFLPQEMAGSRRELLKFGWDNIKKDWDLVSKHback to top mRNA from alignment at Contig_67:130056..131254+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10352 ID=mRNA_10352|Name=jgi.p|Trimin1|136002|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1199bp|location=Sequence derived from alignment at Contig_67:130056..131254+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_67:130056..131254+ >mRNA_10352 ID=mRNA_10352|Name=jgi.p|Trimin1|136002|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=561bp|location=Sequence derived from alignment at Contig_67:130056..131254+ (Tribonema minus UTEX_B_3156 )back to top |