mRNA_10340 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149905
Unique NamemRNA_10340
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149905 vs. uniprot
Match: A0A835YQA1_9STRA (PUB domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA1_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.740e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 VAVSPNITEGLRCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFREYDKGLVELAAVSDETLCALLQLLQEL 300
            VAVSPNITEGLRCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFREYDKGLVELAAVSDETLCALLQLLQEL
Sbjct:    1 VAVSPNITEGLRCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFREYDKGLVELAAVSDETLCALLQLLQEL 100
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149905 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQA1_9STRA4.740e-65100.00PUB domain-containing protein (Fragment) n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_67contigContig_67:42726..43025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149905|gw1.67.135.1
BRITEko00000,ko00001
KEGG Pathwayko04141,ko05202,map04141,map05202
KEGG koko:K14011,ko:K15627
Descriptionendosome to lysosome transport via multivesicular body sorting pathway
COG categoryCO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2699@1|root,KOG2699@2759|Eukaryota
Evalue6.99e-05
Seed ortholog55529.EKX39491
Hectar predicted targeting categoryother localisation
TranscriptId150227
TrackFilteredModels1
ProteinId149905
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149905gene_10340Tribonema minus UTEX_B_3156 geneContig_67 42726..43025 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10340_1exon_10340_1Tribonema minus UTEX_B_3156 exonContig_67 42726..43025 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10340CDS_10340Tribonema minus UTEX_B_3156 CDSContig_67 42726..43025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149905Trimin1|149905|gw1.67.135.1Tribonema minus UTEX_B_3156 polypeptideContig_67 42726..43025 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10340 ID=mRNA_10340|Name=jgi.p|Trimin1|149905|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=300bp|location=Sequence derived from alignment at Contig_67:42726..43025- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGGCGGTTTCGCCCAACATAACTGAAGGGCTGCGCTGCGTCGCGCTCTC
GCATGCCAACAACGAGGACCCCACAACAGCAGTCAAGTACCTGATCAACA
TTGCCAAGCACCCACAGGAGGGCAAATACCGCGTGCTCAAGAAGCAGAAC
TCGCGCTTCATGAATGAGGTCTGGCTCAACCCTGGCATCCGCGGCATGTT
TCAGGCAATTGGGTTCAGGGAGTACGACAAGGGGCTGGTGGAGCTGGCAG
CAGTTTCAGACGAGACGCTGTGTGCACTGCTGCAGCTGCTGCAGGAGCTG
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protein sequence of jgi.p|Trimin1|149905

>Trimin1|149905|gw1.67.135.1 ID=Trimin1|149905|gw1.67.135.1|Name=jgi.p|Trimin1|149905|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
VAVSPNITEGLRCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQN
SRFMNEVWLNPGIRGMFQAIGFREYDKGLVELAAVSDETLCALLQLLQEL
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mRNA from alignment at Contig_67:42726..43025-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10340 ID=mRNA_10340|Name=jgi.p|Trimin1|149905|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=300bp|location=Sequence derived from alignment at Contig_67:42726..43025- (Tribonema minus UTEX_B_3156 )
GTGGCGGTTTCGCCCAACATAACTGAAGGGCTGCGCTGCGTCGCGCTCTC
GCATGCCAACAACGAGGACCCCACAACAGCAGTCAAGTACCTGATCAACA
TTGCCAAGCACCCACAGGAGGGCAAATACCGCGTGCTCAAGAAGCAGAAC
TCGCGCTTCATGAATGAGGTCTGGCTCAACCCTGGCATCCGCGGCATGTT
TCAGGCAATTGGGTTCAGGGAGTACGACAAGGGGCTGGTGGAGCTGGCAG
CAGTTTCAGACGAGACGCTGTGTGCACTGCTGCAGCTGCTGCAGGAGCTG
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Coding sequence (CDS) from alignment at Contig_67:42726..43025-

>mRNA_10340 ID=mRNA_10340|Name=jgi.p|Trimin1|149905|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=300bp|location=Sequence derived from alignment at Contig_67:42726..43025- (Tribonema minus UTEX_B_3156 )
GTGGCGGTTTCGCCCAACATAACTGAAGGGCTGCGCTGCGTCGCGCTCTC
GCATGCCAACAACGAGGACCCCACAACAGCAGTCAAGTACCTGATCAACA
TTGCCAAGCACCCACAGGAGGGCAAATACCGCGTGCTCAAGAAGCAGAAC
TCGCGCTTCATGAATGAGGTCTGGCTCAACCCTGGCATCCGCGGCATGTT
TCAGGCAATTGGGTTCAGGGAGTACGACAAGGGGCTGGTGGAGCTGGCAG
CAGTTTCAGACGAGACGCTGTGTGCACTGCTGCAGCTGCTGCAGGAGCTG
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