mRNA_10334 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135775
Unique NamemRNA_10334
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Match: A0A836CA60_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA60_9STRA)

HSP 1 Score: 312 bits (800), Expect = 1.240e-107
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQRTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFL 480
            KAMELFCGAGGLSEGAKPFVHTVLASDI+ERACKLFASNH GTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQ+TLDLAQGLGFDHSHNVIS NDCGLPTKRRRVF+
Sbjct:    1 KAMELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFI 160          
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Match: A0A835YGJ9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGJ9_9STRA)

HSP 1 Score: 321 bits (822), Expect = 7.320e-101
Identity = 157/160 (98.12%), Postives = 160/160 (100.00%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQRTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFL 480
            KAMELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKG+QCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQ+TLDLAQGLGFDHSHNVISGNDCGLPTKRRRVF+
Sbjct:  607 KAMELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGLQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFI 766          
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Match: A0A835ZBI0_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI0_9STRA)

HSP 1 Score: 282 bits (721), Expect = 6.260e-87
Identity = 139/151 (92.05%), Postives = 142/151 (94.04%), Query Frame = 1
Query:   28 GGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQRTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFL 480
            GG +     FVHTVLASDISERACKLFASNHCGT VMPANINDR AQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQ+ LDLAQGLGFDHSHNVISGNDCGLPTKRRRVF+
Sbjct:  529 GGSARAQNRFVHTVLASDISERACKLFASNHCGTAVMPANINDRCAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFI 679          
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Match: A0A835YZF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF8_9STRA)

HSP 1 Score: 278 bits (711), Expect = 6.880e-87
Identity = 143/162 (88.27%), Postives = 146/162 (90.12%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANIND--RSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQRTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFL 480
            KAMELFCGA GLSEGAKPFV TVLASDI ERACKLFASNHCGTTVMPANIND  RSAQLHIIAEA RLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIIS LQVSAA+STVRMVLLENVVGFLSTPEFQ+TLDLAQGLGFDHSHNVISGND       R V +
Sbjct:   28 KAMELFCGAEGLSEGAKPFVDTVLASDICERACKLFASNHCGTTVMPANINDGHRSAQLHIIAEACRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISKLQVSAAISTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISGNDVTKRIPHRHVVV 189          
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Match: A0A835ZBG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG8_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.580e-59
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV 303
            KAME FCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV
Sbjct:  642 KAMERFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQV 742          
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Match: A0A835YYY1_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY1_9STRA)

HSP 1 Score: 187 bits (474), Expect = 6.010e-58
Identity = 87/158 (55.06%), Postives = 117/158 (74.05%), Query Frame = 1
Query:    7 MELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQRTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFL 480
            ME++CGAGG + G K ++ T LA+D S+ A  L+A NH    V+  + N+R  QL +I EA RLGVEV  GGPPCT FS +GKR + +G QC++SML V AA+ ++RM +LENV+GF+STP++Q TL  A+ LGF  SH+V++G+DCGLPT RRRVFL
Sbjct:    1 MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFL 158          
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Match: A0A836C7I0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7I0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.330e-30
Identity = 66/79 (83.54%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    1 KAMELFCGAGGLSEGAKPF--VHTVLASDISERACKLF--ASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGP 225
            KAMELFCGAGGLSEGA PF  V TVLASDISERAC LF  ASNHCGTTVMPANINDRSA+LHI AEARRLGVEV    P
Sbjct:  403 KAMELFCGAGGLSEGATPFQIVDTVLASDISERACNLFQVASNHCGTTVMPANINDRSARLHISAEARRLGVEVQRWTP 481          
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Match: A0A835YXD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.410e-21
Identity = 59/159 (37.11%), Postives = 75/159 (47.17%), Query Frame = 1
Query:    4 AMELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQRTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFL 480
            AME++CGAGG + GAK ++ T LA+D S+ AC  +A NH    V+  + N+R  QL +IAEA RLGVE                                                       +Q TL  A+ LGF  SH+VI G+DCGLPT RRRVFL
Sbjct: 2222 AMEMYCGAGGFTHGAKEYLDTALATDFSQSACARYARNHPAARVIQGDANERRVQLALIAEATRLGVE-------------------------------------------------------WQHTLGAARTLGFSFSHHVIRGDDCGLPTMRRRVFL 2325          
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Match: A0A835Z6Y7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.870e-21
Identity = 57/158 (36.08%), Postives = 75/158 (47.47%), Query Frame = 1
Query:    7 MELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQRTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFL 480
            ME++CGAGG + GAK +++T LA+D S+ AC L+A NH    V+  + N+R  QL +IAEA RLGVE                                                       +Q TL  A+ LGF  SH+V+ G+DCGLPT  RRVFL
Sbjct: 2331 MEMYCGAGGFTHGAKEYLNTSLATDFSQSACALYARNHPAARVLQGDANERGVQLALIAEATRLGVE-------------------------------------------------------WQHTLAAARALGFSFSHHVVRGDDCGLPTMWRRVFL 2433          
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Match: A0A3L6JLL9_THOAR (DNA (cytosine-5-)-methyltransferase n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A3L6JLL9_THOAR)

HSP 1 Score: 87.4 bits (215), Expect = 3.090e-17
Identity = 58/166 (34.94%), Postives = 89/166 (53.61%), Query Frame = 1
Query:    7 MELFCGAGGLSEGAKPFVHTVL-ASDISERACKLFASNHCGTTVMPANINDRSAQLHII--AEARRLG--VEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVG--FLSTPEFQRT-LDLAQGLGFDHSHNVISGNDCGLPTKRRRVFL 480
            ++LFCGAGGLSEG +   H VL A+D++   C+ +  NH   TV+ AN+ + +   ++I   E++  G  + + +GGPPC  FS +GKR        +I    V         VL+ENV G  ++      +T LD     G+ HS  V+   + G+P +RRRVF+
Sbjct:  159 VDLFCGAGGLSEGLRQAGHRVLVATDLNRHMCETYRLNHENATVVQANVLNEADTDNLIDTIESKLKGRTLNLLAGGPPCQGFSTAGKRSPSDVRNSLIFRTLVFIHKLRPENVLIENVPGIRWIRQGRLLKTMLDALTREGYHHSTLVLKAEEYGVPQRRRRVFI 324          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135775 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CA60_9STRA1.240e-10796.88S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YGJ9_9STRA7.320e-10198.13S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835ZBI0_9STRA6.260e-8792.05S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YZF8_9STRA6.880e-8788.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBG8_9STRA1.580e-5999.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYY1_9STRA6.010e-5855.06S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836C7I0_9STRA3.330e-3083.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXD3_9STRA1.410e-2137.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6Y7_9STRA4.870e-2136.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3L6JLL9_THOAR3.090e-1734.94DNA (cytosine-5-)-methyltransferase n=1 Tax=Thorar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:738672..739151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135775|gw1.63.14.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558
EC2.1.1.37
DescriptionBelongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
COG categoryH
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria,1MV9H@1224|Proteobacteria,2U0FE@28211|Alphaproteobacteria
Evalue4.78e-16
Seed ortholog766499.C357_17920
Hectar predicted targeting categoryother localisation
TranscriptId136097
TrackFilteredModels1
ProteinId135775
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135775gene_10334Tribonema minus UTEX_B_3156 geneContig_63 738672..739151 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10334_1exon_10334_1Tribonema minus UTEX_B_3156 exonContig_63 738672..739151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10334CDS_10334Tribonema minus UTEX_B_3156 CDSContig_63 738672..739151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135775Trimin1|135775|gw1.63.14.1Tribonema minus UTEX_B_3156 polypeptideContig_63 738672..739151 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10334 ID=mRNA_10334|Name=jgi.p|Trimin1|135775|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=480bp|location=Sequence derived from alignment at Contig_63:738672..739151- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAAGCCATGGAACTCTTTTGTGGTGCAGGGGGGCTCAGCGAGGGCGCAAA
ACCGTTTGTGCACACAGTGCTGGCGTCAGACATCAGCGAGCGGGCGTGCA
AACTGTTTGCCAGCAACCACTGCGGCACTACAGTAATGCCTGCTAACATC
AACGACCGCAGCGCTCAACTGCACATCATAGCGGAGGCACGCCGACTTGG
GGTTGAAGTCTCCAGCGGTGGACCCCCATGCACTGACTTCAGCATGTCAG
GCAAACGATGCTCTCAGAAGGGCATACAGTGCATCATCAGCATGCTGCAG
GTCTCAGCGGCGGTCAGCACAGTGCGCATGGTGCTATTGGAGAACGTGGT
GGGATTCCTGAGCACACCTGAGTTCCAGCGGACTCTAGACCTAGCTCAGG
GCTTAGGGTTTGACCACAGCCACAACGTCATCAGTGGCAACGACTGCGGC
CTGCCTACAAAGCGGCGCCGTGTGTTCCTC
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protein sequence of jgi.p|Trimin1|135775

>Trimin1|135775|gw1.63.14.1 ID=Trimin1|135775|gw1.63.14.1|Name=jgi.p|Trimin1|135775|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=160bp
KAMELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANI
NDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQ
VSAAVSTVRMVLLENVVGFLSTPEFQRTLDLAQGLGFDHSHNVISGNDCG
LPTKRRRVFL
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mRNA from alignment at Contig_63:738672..739151-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10334 ID=mRNA_10334|Name=jgi.p|Trimin1|135775|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=480bp|location=Sequence derived from alignment at Contig_63:738672..739151- (Tribonema minus UTEX_B_3156 )
AAAGCCATGGAACTCTTTTGTGGTGCAGGGGGGCTCAGCGAGGGCGCAAA ACCGTTTGTGCACACAGTGCTGGCGTCAGACATCAGCGAGCGGGCGTGCA AACTGTTTGCCAGCAACCACTGCGGCACTACAGTAATGCCTGCTAACATC AACGACCGCAGCGCTCAACTGCACATCATAGCGGAGGCACGCCGACTTGG GGTTGAAGTCTCCAGCGGTGGACCCCCATGCACTGACTTCAGCATGTCAG GCAAACGATGCTCTCAGAAGGGCATACAGTGCATCATCAGCATGCTGCAG GTCTCAGCGGCGGTCAGCACAGTGCGCATGGTGCTATTGGAGAACGTGGT GGGATTCCTGAGCACACCTGAGTTCCAGCGGACTCTAGACCTAGCTCAGG GCTTAGGGTTTGACCACAGCCACAACGTCATCAGTGGCAACGACTGCGGC CTGCCTACAAAGCGGCGCCGTGTGTTCCTC
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Coding sequence (CDS) from alignment at Contig_63:738672..739151-

>mRNA_10334 ID=mRNA_10334|Name=jgi.p|Trimin1|135775|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=480bp|location=Sequence derived from alignment at Contig_63:738672..739151- (Tribonema minus UTEX_B_3156 )
AAAGCCATGGAACTCTTTTGTGGTGCAGGGGGGCTCAGCGAGGGCGCAAA
ACCGTTTGTGCACACAGTGCTGGCGTCAGACATCAGCGAGCGGGCGTGCA
AACTGTTTGCCAGCAACCACTGCGGCACTACAGTAATGCCTGCTAACATC
AACGACCGCAGCGCTCAACTGCACATCATAGCGGAGGCACGCCGACTTGG
GGTTGAAGTCTCCAGCGGTGGACCCCCATGCACTGACTTCAGCATGTCAG
GCAAACGATGCTCTCAGAAGGGCATACAGTGCATCATCAGCATGCTGCAG
GTCTCAGCGGCGGTCAGCACAGTGCGCATGGTGCTATTGGAGAACGTGGT
GGGATTCCTGAGCACACCTGAGTTCCAGCGGACTCTAGACCTAGCTCAGG
GCTTAGGGTTTGACCACAGCCACAACGTCATCAGTGGCAACGACTGCGGC
CTGCCTACAAAGCGGCGCCGTGTGTTCCTC
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