mRNA_10329 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A836C9I7_9STRA (Coiled-coil domain-containing protein 86 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I7_9STRA) HSP 1 Score: 225 bits (573), Expect = 4.870e-74 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
Query: 1 AQPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
AQPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS
Sbjct: 1 AQPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 129
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: D7G2I9_ECTSI (Coiled-coil domain-containing protein 86 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2I9_ECTSI) HSP 1 Score: 113 bits (282), Expect = 3.030e-28 Identity = 70/123 (56.91%), Postives = 87/123 (70.73%), Query Frame = 1
Query: 16 GRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPW 384
GR VSGR WK+R+QSQRA QRTT T+ LSSSW K + K A+ E+EMR+AK+ E E +NEMK++T+QTI+KTHK+K MSKKQLRQIKK Q+NS+TG+VE VSPW
Sbjct: 136 GRCVSGRDWKARNQSQRASMQRTTATETLSSSWAKKLEIKAKRQAIMAMEKEMRDAKLQEIEDXXXXXXXXXXXXXQNEMKNTTYQTISKTHKMKTMSKKQLRQIKKRQINSRTGEVEFVSPW 258
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A6U1MPN8_9STRA (Coiled-coil domain-containing protein 86 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MPN8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 6.980e-23 Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 16 GRNVSGRLWK-SRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
GRNVSGR WK SR++S + T K+LSSSW+ K+ ER K K+ E E++E +KE RR +N +K++T+QTITK HKLK +SKKQLRQIKK +V+ KTGQVELVSPW+
Sbjct: 12 GRNVSGRNWKKSRNKSSTQV---TKVVKQLSSSWQQKQLERDKKRRTKEIEEEIKERARQDKEXXXXXXXXXAARRQQNLLKATTYQTITKVHKLKTLSKKQLRQIKKTRVDPKTGQVELVSPWA 133
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A3R7I187_9STRA (Coiled-coil domain-containing protein 86 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7I187_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.650e-17 Identity = 61/127 (48.03%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 7 PVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
P GR VSGR WK + Q R AQ GTK LS++W+ K +RTKL +K + E++ + E++A + A+ E+E R ENE+KS+ Q I++TH+LK MSKKQLR IKK VN K G VE V +S
Sbjct: 18 PPRGRPVSGRTWK-KVQKTRFSAQGFKGTKVLSTTWEEKMIKRTKLKELKDLQAEIKTRRQGERDAKRQAREEKEXXRKENELKSAAVQVISRTHRLKTMSKKQLRNIKKTIVN-KQGVVEYVPIYS 142
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A484DTI9_BRELC (Coiled-coil domain-containing protein 86 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTI9_BRELC) HSP 1 Score: 82.0 bits (201), Expect = 2.440e-17 Identity = 58/127 (45.67%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 7 PVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
P GR VSGR+WK R Q R +Q+ GTK LS++W+ K +R+KL +K+ ++E++ + +EK+A++ A+ ENE+KS++ Q I++TH+LK MSKKQLR IKK VN K G VE V +S
Sbjct: 20 PPRGRPVSGRVWK-RVQKTRFSSQKLKGTKVLSTTWEEKLQKRSKLKELKELQKEIKSRRQSEKDAVRQARXXXXXXXKENELKSASVQVISRTHRLKTMSKKQLRNIKKTIVN-KNGVVEYVPVYS 144
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A1V9Z366_9STRA (Coiled-coil domain-containing protein 86 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z366_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.690e-17 Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 1
Query: 4 QPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
QP G+ VSGR WK ++Q+ R TK LS++W+ K A + K +K E E+ K E+ K A+ E+EKRR ENEMKS+T Q I+KTHKLK MSKKQLR I+K ++N K G VE V +S
Sbjct: 9 QPPRGKPVSGRPWK-KAQTARKSMMTYKATKTLSTTWEEKMAMKAKKKEMKDLEHEIAARKRQERLDKKLAREEKEKRRLENEMKSATVQNISKTHKLKTMSKKQLRNIRKTRMN-KNGVVEYVPIYS 134
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A067C5E8_SAPPC (Coiled-coil domain-containing protein 86 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5E8_SAPPC) HSP 1 Score: 80.1 bits (196), Expect = 1.070e-16 Identity = 62/124 (50.00%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 4 QPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELV 375
QP G+ VS R WK ++Q+QR TK LS++W K A + K +K E E+ K E+ K A+ E+EKRR NEMKSST Q I+KTHKLK MSKKQLRQI+K ++N K G VE V
Sbjct: 9 QPPRGQPVSNRPWK-KTQTQRKSMMTYKATKTLSTTWDEKMAMKAKKKEMKDLEHEIAARKKQERLDKKIAREEKEKRRMANEMKSSTVQQISKTHKLKTMSKKQLRQIRKTRMN-KNGVVEYV 130
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A024TTD3_9STRA (Coiled-coil domain-containing protein 86 n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TTD3_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 6.340e-16 Identity = 62/130 (47.69%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 4 QPVLGRNVSGRLWKSRSQSQRAIAQRTT--GTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
+P G VSGR WK + QRA T TK LS++W K A + K +K+ E E+ K EK + A+ E+EKRR NE K+ST Q I KTHKLK MSKKQLR IKK ++N K G++ELV +S
Sbjct: 11 EPPRGVPVSGRSWK---KPQRAKNSMMTFKATKTLSTTWDEKMAAKAKKKEMKELEHEIANRKKQEKIDKRVAREEKEKRRIANEFKASTLQVIKKTHKLKTMSKKQLRNIKKTRMN-KNGEIELVPAYS 136
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A7S2SQR5_9STRA (Coiled-coil domain-containing protein 86 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQR5_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 2.300e-15 Identity = 56/129 (43.41%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 1 AQPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
A + GRNVSGR WK R+Q + + + K +SW+ +++++ + +K E R N MK +T QTITKTHKLK M+KKQLRQIKK QVNS+TGQVELVSPW+
Sbjct: 69 AATIKGRNVSGRSWKRRNQRRASTVIQDASRK---TSWEERQSKKRRRDEMKDLEXXXXXXXXXXXXXXXXXXXXXLAERQANAMKGTTMQTITKTHKLKTMNKKQLRQIKKTQVNSRTGQVELVSPWA 194
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A418DN57_9STRA (RTR1-type domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DN57_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.580e-15 Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 4 QPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVS 378
+P G VSGR WK +S+ ++ TK LS++W K A ++K +K E E+ K EK + A+ E+EKRR NE K+ST Q I KTHKLK MSKKQLR IKK ++N K G++ELVS
Sbjct: 11 EPPRGVPVSGRSWKKTQRSKNSMMT-YKATKTLSTTWDEKMAAKSKKKEMKDLEHEIANRKKQEKVDKRVAREEKEKRRVANEFKASTLQVIKKTHKLKSMSKKQLRNIKKTRMN-KNGEIELVS 133 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10329 ID=mRNA_10329|Name=jgi.p|Trimin1|144320|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_63:681280..681666+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGCAGCCGGTGCTTGGCCGAAATGTCAGCGGGCGGCTGTGGAAAAGCAGback to top protein sequence of jgi.p|Trimin1|144320 >Trimin1|144320|gw1.63.55.1 ID=Trimin1|144320|gw1.63.55.1|Name=jgi.p|Trimin1|144320|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp AQPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAback to top mRNA from alignment at Contig_63:681280..681666+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10329 ID=mRNA_10329|Name=jgi.p|Trimin1|144320|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_63:681280..681666+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_63:681280..681666+ >mRNA_10329 ID=mRNA_10329|Name=jgi.p|Trimin1|144320|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_63:681280..681666+ (Tribonema minus UTEX_B_3156 )back to top |