mRNA_10329 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144320
Unique NamemRNA_10329
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A836C9I7_9STRA (Coiled-coil domain-containing protein 86 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I7_9STRA)

HSP 1 Score: 225 bits (573), Expect = 4.870e-74
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
Query:    1 AQPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
            AQPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS
Sbjct:    1 AQPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 129          
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: D7G2I9_ECTSI (Coiled-coil domain-containing protein 86 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2I9_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.030e-28
Identity = 70/123 (56.91%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   16 GRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPW 384
            GR VSGR WK+R+QSQRA  QRTT T+ LSSSW  K   + K  A+   E+EMR+AK+ E E              +NEMK++T+QTI+KTHK+K MSKKQLRQIKK Q+NS+TG+VE VSPW
Sbjct:  136 GRCVSGRDWKARNQSQRASMQRTTATETLSSSWAKKLEIKAKRQAIMAMEKEMRDAKLQEIEDXXXXXXXXXXXXXQNEMKNTTYQTISKTHKMKTMSKKQLRQIKKRQINSRTGEVEFVSPW 258          
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A6U1MPN8_9STRA (Coiled-coil domain-containing protein 86 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MPN8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 6.980e-23
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = 1
Query:   16 GRNVSGRLWK-SRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
            GRNVSGR WK SR++S   +   T   K+LSSSW+ K+ ER K    K+ E E++E    +KE           RR +N +K++T+QTITK HKLK +SKKQLRQIKK +V+ KTGQVELVSPW+
Sbjct:   12 GRNVSGRNWKKSRNKSSTQV---TKVVKQLSSSWQQKQLERDKKRRTKEIEEEIKERARQDKEXXXXXXXXXAARRQQNLLKATTYQTITKVHKLKTLSKKQLRQIKKTRVDPKTGQVELVSPWA 133          
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A3R7I187_9STRA (Coiled-coil domain-containing protein 86 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7I187_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.650e-17
Identity = 61/127 (48.03%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    7 PVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
            P  GR VSGR WK + Q  R  AQ   GTK LS++W+ K  +RTKL  +K  + E++  +  E++A + A+ E+E  R ENE+KS+  Q I++TH+LK MSKKQLR IKK  VN K G VE V  +S
Sbjct:   18 PPRGRPVSGRTWK-KVQKTRFSAQGFKGTKVLSTTWEEKMIKRTKLKELKDLQAEIKTRRQGERDAKRQAREEKEXXRKENELKSAAVQVISRTHRLKTMSKKQLRNIKKTIVN-KQGVVEYVPIYS 142          
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A484DTI9_BRELC (Coiled-coil domain-containing protein 86 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTI9_BRELC)

HSP 1 Score: 82.0 bits (201), Expect = 2.440e-17
Identity = 58/127 (45.67%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    7 PVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
            P  GR VSGR+WK R Q  R  +Q+  GTK LS++W+ K  +R+KL  +K+ ++E++  + +EK+A++ A+        ENE+KS++ Q I++TH+LK MSKKQLR IKK  VN K G VE V  +S
Sbjct:   20 PPRGRPVSGRVWK-RVQKTRFSSQKLKGTKVLSTTWEEKLQKRSKLKELKELQKEIKSRRQSEKDAVRQARXXXXXXXKENELKSASVQVISRTHRLKTMSKKQLRNIKKTIVN-KNGVVEYVPVYS 144          
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A1V9Z366_9STRA (Coiled-coil domain-containing protein 86 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z366_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.690e-17
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    4 QPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
            QP  G+ VSGR WK ++Q+ R        TK LS++W+ K A + K   +K  E E+   K  E+   K A+ E+EKRR ENEMKS+T Q I+KTHKLK MSKKQLR I+K ++N K G VE V  +S
Sbjct:    9 QPPRGKPVSGRPWK-KAQTARKSMMTYKATKTLSTTWEEKMAMKAKKKEMKDLEHEIAARKRQERLDKKLAREEKEKRRLENEMKSATVQNISKTHKLKTMSKKQLRNIRKTRMN-KNGVVEYVPIYS 134          
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A067C5E8_SAPPC (Coiled-coil domain-containing protein 86 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5E8_SAPPC)

HSP 1 Score: 80.1 bits (196), Expect = 1.070e-16
Identity = 62/124 (50.00%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    4 QPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELV 375
            QP  G+ VS R WK ++Q+QR        TK LS++W  K A + K   +K  E E+   K  E+   K A+ E+EKRR  NEMKSST Q I+KTHKLK MSKKQLRQI+K ++N K G VE V
Sbjct:    9 QPPRGQPVSNRPWK-KTQTQRKSMMTYKATKTLSTTWDEKMAMKAKKKEMKDLEHEIAARKKQERLDKKIAREEKEKRRMANEMKSSTVQQISKTHKLKTMSKKQLRQIRKTRMN-KNGVVEYV 130          
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A024TTD3_9STRA (Coiled-coil domain-containing protein 86 n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TTD3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.340e-16
Identity = 62/130 (47.69%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    4 QPVLGRNVSGRLWKSRSQSQRAIAQRTT--GTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
            +P  G  VSGR WK   + QRA     T   TK LS++W  K A + K   +K+ E E+   K  EK   + A+ E+EKRR  NE K+ST Q I KTHKLK MSKKQLR IKK ++N K G++ELV  +S
Sbjct:   11 EPPRGVPVSGRSWK---KPQRAKNSMMTFKATKTLSTTWDEKMAAKAKKKEMKELEHEIANRKKQEKIDKRVAREEKEKRRIANEFKASTLQVIKKTHKLKTMSKKQLRNIKKTRMN-KNGEIELVPAYS 136          
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A7S2SQR5_9STRA (Coiled-coil domain-containing protein 86 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQR5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-15
Identity = 56/129 (43.41%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    1 AQPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPWS 387
            A  + GRNVSGR WK R+Q + +   +    K   +SW+ +++++ +   +K  E                        R  N MK +T QTITKTHKLK M+KKQLRQIKK QVNS+TGQVELVSPW+
Sbjct:   69 AATIKGRNVSGRSWKRRNQRRASTVIQDASRK---TSWEERQSKKRRRDEMKDLEXXXXXXXXXXXXXXXXXXXXXLAERQANAMKGTTMQTITKTHKLKTMNKKQLRQIKKTQVNSRTGQVELVSPWA 194          
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Match: A0A418DN57_9STRA (RTR1-type domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DN57_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.580e-15
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    4 QPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAAVKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVS 378
            +P  G  VSGR WK   +S+ ++      TK LS++W  K A ++K   +K  E E+   K  EK   + A+ E+EKRR  NE K+ST Q I KTHKLK MSKKQLR IKK ++N K G++ELVS
Sbjct:   11 EPPRGVPVSGRSWKKTQRSKNSMMT-YKATKTLSTTWDEKMAAKSKKKEMKDLEHEIANRKKQEKVDKRVAREEKEKRRVANEFKASTLQVIKKTHKLKSMSKKQLRNIKKTRMN-KNGEIELVS 133          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144320 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9I7_9STRA4.870e-74100.00Coiled-coil domain-containing protein 86 (Fragment... [more]
D7G2I9_ECTSI3.030e-2856.91Coiled-coil domain-containing protein 86 n=2 Tax=E... [more]
A0A6U1MPN8_9STRA6.980e-2352.00Coiled-coil domain-containing protein 86 n=1 Tax=F... [more]
A0A3R7I187_9STRA1.650e-1748.03Coiled-coil domain-containing protein 86 n=3 Tax=P... [more]
A0A484DTI9_BRELC2.440e-1745.67Coiled-coil domain-containing protein 86 n=1 Tax=B... [more]
A0A1V9Z366_9STRA2.690e-1748.44Coiled-coil domain-containing protein 86 n=2 Tax=S... [more]
A0A067C5E8_SAPPC1.070e-1650.00Coiled-coil domain-containing protein 86 n=2 Tax=S... [more]
A0A024TTD3_9STRA6.340e-1647.69Coiled-coil domain-containing protein 86 n=2 Tax=A... [more]
A0A7S2SQR5_9STRA2.300e-1543.41Coiled-coil domain-containing protein 86 n=1 Tax=R... [more]
A0A418DN57_9STRA4.580e-1547.20RTR1-type domain-containing protein n=7 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:681280..681666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144320|gw1.63.55.1
BRITEko00000,ko03009
KEGG koko:K14822
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Preferred nameCCDC86
DescriptionCgr1 family
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4538@1|root,KOG4538@2759|Eukaryota
Evalue4.97e-29
Seed ortholog2880.D7G2I9
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_001690.1
TranscriptId144642
TrackFilteredModels1
ProteinId144320
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144320gene_10329Tribonema minus UTEX_B_3156 geneContig_63 681280..681666 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10329_1exon_10329_1Tribonema minus UTEX_B_3156 exonContig_63 681280..681666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10329CDS_10329Tribonema minus UTEX_B_3156 CDSContig_63 681280..681666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144320Trimin1|144320|gw1.63.55.1Tribonema minus UTEX_B_3156 polypeptideContig_63 681280..681666 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10329 ID=mRNA_10329|Name=jgi.p|Trimin1|144320|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_63:681280..681666+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGCAGCCGGTGCTTGGCCGAAATGTCAGCGGGCGGCTGTGGAAAAGCAG
GAGCCAGTCACAAAGGGCTATTGCTCAAAGAACAACGGGTACGAAGGAGC
TTAGCAGCAGCTGGAAAGCCAAGGAGGCGGAGAGGACGAAATTGGCGGCT
GTGAAGCAGAAGGAGCGCGAGATGAGGGAGGCTAAGATAGCGGAAAAGGA
GGCATTAAAGGCAGCTAAGTTGGAGAGAGAGAAGAGGCGTGCTGAGAACG
AAATGAAGAGCAGCACTTTCCAGACGATAACAAAGACGCACAAGCTCAAG
GGCATGAGCAAGAAGCAGCTCAGGCAGATCAAGAAGATGCAGGTCAATAG
CAAGACAGGGCAGGTGGAGCTCGTGTCGCCTTGGAGC
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protein sequence of jgi.p|Trimin1|144320

>Trimin1|144320|gw1.63.55.1 ID=Trimin1|144320|gw1.63.55.1|Name=jgi.p|Trimin1|144320|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
AQPVLGRNVSGRLWKSRSQSQRAIAQRTTGTKELSSSWKAKEAERTKLAA
VKQKEREMREAKIAEKEALKAAKLEREKRRAENEMKSSTFQTITKTHKLK
GMSKKQLRQIKKMQVNSKTGQVELVSPWS
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mRNA from alignment at Contig_63:681280..681666+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10329 ID=mRNA_10329|Name=jgi.p|Trimin1|144320|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_63:681280..681666+ (Tribonema minus UTEX_B_3156 )
GCGCAGCCGGTGCTTGGCCGAAATGTCAGCGGGCGGCTGTGGAAAAGCAG GAGCCAGTCACAAAGGGCTATTGCTCAAAGAACAACGGGTACGAAGGAGC TTAGCAGCAGCTGGAAAGCCAAGGAGGCGGAGAGGACGAAATTGGCGGCT GTGAAGCAGAAGGAGCGCGAGATGAGGGAGGCTAAGATAGCGGAAAAGGA GGCATTAAAGGCAGCTAAGTTGGAGAGAGAGAAGAGGCGTGCTGAGAACG AAATGAAGAGCAGCACTTTCCAGACGATAACAAAGACGCACAAGCTCAAG GGCATGAGCAAGAAGCAGCTCAGGCAGATCAAGAAGATGCAGGTCAATAG CAAGACAGGGCAGGTGGAGCTCGTGTCGCCTTGGAGC
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Coding sequence (CDS) from alignment at Contig_63:681280..681666+

>mRNA_10329 ID=mRNA_10329|Name=jgi.p|Trimin1|144320|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_63:681280..681666+ (Tribonema minus UTEX_B_3156 )
GCGCAGCCGGTGCTTGGCCGAAATGTCAGCGGGCGGCTGTGGAAAAGCAG
GAGCCAGTCACAAAGGGCTATTGCTCAAAGAACAACGGGTACGAAGGAGC
TTAGCAGCAGCTGGAAAGCCAAGGAGGCGGAGAGGACGAAATTGGCGGCT
GTGAAGCAGAAGGAGCGCGAGATGAGGGAGGCTAAGATAGCGGAAAAGGA
GGCATTAAAGGCAGCTAAGTTGGAGAGAGAGAAGAGGCGTGCTGAGAACG
AAATGAAGAGCAGCACTTTCCAGACGATAACAAAGACGCACAAGCTCAAG
GGCATGAGCAAGAAGCAGCTCAGGCAGATCAAGAAGATGCAGGTCAATAG
CAAGACAGGGCAGGTGGAGCTCGTGTCGCCTTGGAGC
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