mRNA_10323 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Match: A0A835YVX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX5_9STRA) HSP 1 Score: 320 bits (821), Expect = 5.760e-111 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 Query: 1 EGIVKLAESLGDVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVSWGRRFVFQPVGANLPK 468 EGIVKLAESLGDVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVSWGRRFVFQPVGANLPK Sbjct: 1 EGIVKLAESLGDVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVSWGRRFVFQPVGANLPK 156
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Match: A0A835YWW1_9STRA (F420_oxidored domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWW1_9STRA) HSP 1 Score: 278 bits (710), Expect = 6.290e-93 Identity = 131/156 (83.97%), Postives = 145/156 (92.95%), Query Frame = 1 Query: 1 EGIVKLAESLGDVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVSWGRRFVFQPVGANLPK 468 EGI KLAESLGDVTGK IIDVTNPLS +P +EVRWKQGTS AEVLQ+ALPNAI+YKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKND+VATLIKAMGWIPAYVGP RYARNLEA+AE+WIH+ VP AG+T V WGR FVF+P+GA++P+ Sbjct: 76 EGITKLAESLGDVTGKVIIDVTNPLSAFPGLEVRWKQGTSGAEVLQAALPNAIIYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDQVATLIKAMGWIPAYVGPIRYARNLEAIAELWIHLGVPPAGTTSVFWGRNFVFEPIGASIPE 231
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Match: A0A836C3N3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C3N3_9CHLO) HSP 1 Score: 175 bits (444), Expect = 2.930e-53 Identity = 90/149 (60.40%), Postives = 113/149 (75.84%), Query Frame = 1 Query: 4 GIVKLAESL--GDVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVSWGRRFVFQ 444 GI +A+SL + GK IID TNPL+ YP +EVRW++GTSA EVL +ALPN++VYKAFNT+GVE+MSH DGS TG QLSM++ GGPE+ + V +I A+G+ PAYVGP RYARNLEA+AE+W+H+ VP AG T WGR F FQ Sbjct: 25 GIKTVADSLLGPNAAGKVIIDTTNPLNSYPNLEVRWREGTSAGEVLAAALPNSVVYKAFNTVGVEHMSHPDGSLI---TGQQLSMLFCGGPERLEEVEEVISAVGFDPAYVGPIRYARNLEAMAELWLHLGVPGAG-TAHKWGRNFHFQ 169
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Match: A0A835YZP3_9STRA (Glycosyl hydrolases family 18-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP3_9STRA) HSP 1 Score: 185 bits (469), Expect = 2.150e-51 Identity = 87/156 (55.77%), Postives = 110/156 (70.51%), Query Frame = 1 Query: 1 EGIVKLAESLGD-VTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVSWGRRFVFQPVGANLP 465 E +A S G + GK ++D T+P++DYP+M RW++GTS EVLQ LP+ VYKAFNT+GV M+HGDG+ AGW+GG L+M+YAG PEK D +I A+GW PAYVGP RYARNLEALAE+WIH+ +P +G WG F FQPVG P Sbjct: 764 EAYAAIAASFGPGIKGKVLLDATDPVTDYPEMAWRWEKGTSGGEVLQGLLPDTTVYKAFNTVGVGMMAHGDGATVAGWSGGTLTMLYAGAPEKRDVAEQVISAIGWNPAYVGPIRYARNLEALAELWIHLCIPPSGLAGTWWGLNFHFQPVGIQTP 919
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Match: A0A2J7ZZV8_9CHLO (Metalloreductase STEAP3 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZZV8_9CHLO) HSP 1 Score: 163 bits (412), Expect = 7.930e-48 Identity = 84/150 (56.00%), Postives = 104/150 (69.33%), Query Frame = 1 Query: 4 GIVKLAESLGD-VTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVSWGRRFVFQPV 450 GI A SLG + GK +ID TNPL+ +P +EVRW GTS EVL + LP+ IVYKAFNT+GV MSH DGS TG QL+M++AGGP + + +I A+G+ P YVGP RYARNLEA+AE+WIH+SVP G T WGR F FQ + Sbjct: 73 GIKSTAASLGPGIAGKVLIDATNPLTSWPGLEVRWTAGTSGGEVLAAVLPDTIVYKAFNTIGVNQMSHADGSAI---TGQQLTMLFAGGPAQREAAEEVISAVGFKPEYVGPIRYARNLEAIAELWIHLSVPGVG-TAEKWGRDFHFQTI 218
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Match: A0A836C515_9CHLO (F420_oxidored domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C515_9CHLO) HSP 1 Score: 159 bits (401), Expect = 3.870e-46 Identity = 82/150 (54.67%), Postives = 107/150 (71.33%), Query Frame = 1 Query: 4 GIVKLAESLG-DVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVSWGRRFVFQPV 450 G+ +AESLG +V GK +ID TNPL +P ++ RWK+GTSA EV+ +ALPN++VYKAFNT+ E M+ D G+ G ++M+AGGPE+ D V +IK +G+ PAYVGP RYARNLEA AE+W+H+ VP AG T WGR F FQ V Sbjct: 74 GVKAIAESLGPEVAGKVVIDATNPLGGWPGLDARWKEGTSAGEVMAAALPNSVVYKAFNTVPFEYMA--DTKGYI--PGLSPTLMFAGGPERKDEVEAVIKGVGFEPAYVGPIRYARNLEAFAELWVHLGVPGAG-TSAKWGRTFHFQVV 218
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Match: A0A835VZB3_CHLIN (F420_oxidored domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VZB3_CHLIN) HSP 1 Score: 155 bits (392), Expect = 1.020e-44 Identity = 84/157 (53.50%), Postives = 113/157 (71.97%), Query Frame = 1 Query: 4 GIVKLAESLG-DVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVS-WGRRFVFQPVGANLPK 468 GI +A+SLG DVTGK +ID NPLS +P +E RWK+GTS EVL + LP A+V+KAFNT+ VE M+ DGS GG L+++YAGGPE+ + +I+A+G+ P +VGP RYARNLE++AEM++H+SVP AG VS WGR + Q +G + PK Sbjct: 72 GIKAIAKSLGPDVTGKVLIDACNPLSAWPGLESRWKEGTSFGEVLAAELPGAVVFKAFNTVPVEIMASADGSTLPE-AGGPLTLLYAGGPERQELAEEVIRAVGFTPVHVGPIRYARNLESIAEMYVHLSVPGAGVPGVSKWGRLWHLQVLG-DFPK 226
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Match: A0A8J4FFJ3_9CHLO (F420_oxidored domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4FFJ3_9CHLO) HSP 1 Score: 156 bits (394), Expect = 1.730e-44 Identity = 82/148 (55.41%), Postives = 100/148 (67.57%), Query Frame = 1 Query: 4 GIVKLAESLG-DVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVSWGRRFVFQ 444 GI ++A +LG D+ GK ++D TNP++ YP +EVRW G SA EVL LP+ VYKAFNT+G M H DGSG TG QL+MM+AGGP+ V +I G+ P YVGP RYARNLEALAE+WIH+ VP G T WGR F FQ Sbjct: 125 GIREIASNLGPDIKGKVLVDATNPVTPYPSLEVRWT-GKSAGEVLSEVLPDTAVYKAFNTIGANQMEHADGSGI---TGEQLTMMFAGGPDHKGLVEEVIADTGFKPVYVGPIRYARNLEALAELWIHLGVPGVG-TAEKWGRDFHFQ 267
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Match: A0A836B5N8_9CHLO (F420_oxidored domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B5N8_9CHLO) HSP 1 Score: 152 bits (383), Expect = 2.410e-43 Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 1 Query: 4 GIVKLAESLG-DVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNA-IVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVS-WGRRFVFQPVGANLPK 468 GI +A+SLG +V GK +ID NPLS +P +E RWK+G+S EVL + LP+ +VYKAFNT+ VE M+ DGS GG L+++YAGGPE+ + +IKA+G+ P YVGP RYARNLE++AE+++H+SVP AG V+ WGR + Q +G LPK Sbjct: 72 GIKAIAKSLGPEVKGKIVIDACNPLSAWPGLESRWKEGSSFGEVLAAELPSGTVVYKAFNTVPVEVMAAADGSTIPA-AGGPLTLLYAGGPERQEAAEEVIKAVGFKPLYVGPIRYARNLESIAELYVHLSVPGAGIPGVAKWGRMWHLQALGDGLPK 228
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Match: A0A150FY09_GONPE (F420_oxidored domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FY09_GONPE) HSP 1 Score: 149 bits (377), Expect = 1.500e-42 Identity = 79/149 (53.02%), Postives = 103/149 (69.13%), Query Frame = 1 Query: 1 EGIVKLAESLG-DVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPNAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATLIKAMGWIPAYVGPNRYARNLEALAEMWIHVSVPEAGSTPVSWGRRFVFQ 444 +GI +A LG ++ GK +ID TNP+S YP +EVRW G S EVL ALP++ V+KAFNT+GVE+M+ DGS +G QL+M++AGGP + ++ A G+ PAYVGP RYARNLEA+AE+WIH+ VP G T WGR F FQ Sbjct: 72 DGIKAIAAGLGTEIRGKVVIDATNPVSPYPALEVRWT-GKSGGEVLAEALPDSHVFKAFNTVGVEHMAQPDGSAISGE---QLTMLFAGGPAGREAAEEVVAAAGFKPAYVGPIRYARNLEAIAELWIHLGVPGVG-TADKWGRSFHFQ 215 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169397 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10323 ID=mRNA_10323|Name=jgi.p|Trimin1|169397|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_63:652055..653733+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGGGCATTGTGAAACTGGCAGAGTCTCTGGGCGACGTAACTGGCAAGCCback to top protein sequence of jgi.p|Trimin1|169397 >Trimin1|169397|e_gw1.63.21.1 ID=Trimin1|169397|e_gw1.63.21.1|Name=jgi.p|Trimin1|169397|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp EGIVKLAESLGDVTGKPIIDVTNPLSDYPQMEVRWKQGTSAAEVLQSALPback to top mRNA from alignment at Contig_63:652055..653733+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10323 ID=mRNA_10323|Name=jgi.p|Trimin1|169397|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1679bp|location=Sequence derived from alignment at Contig_63:652055..653733+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_63:652055..653733+ >mRNA_10323 ID=mRNA_10323|Name=jgi.p|Trimin1|169397|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_63:652055..653733+ (Tribonema minus UTEX_B_3156 )back to top |