mRNA_10305 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152568
Unique NamemRNA_10305
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A835YMA1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMA1_9STRA)

HSP 1 Score: 308 bits (788), Expect = 7.490e-106
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1
Query:    1 PSTAAATPSTANLKALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
            PSTAAATPSTANLKALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI
Sbjct:    1 PSTAAATPSTANLKALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 159          
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A836CRK4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRK4_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.570e-90
Identity = 138/153 (90.20%), Postives = 142/153 (92.81%), Query Frame = 1
Query:   19 TPSTANLKALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
            TP T   KALYFTETTMRSLAKA+VWRV AAVITL SGLVFSKNL+ AASIVGSDFVTKSGFMFLGER WNKVNWGKGAKTDGAKRSLAKALLWRVFA GNTLICGAFLAGDLSVALKIAGSDTVFKT LFYINERMWARVEWGKEY+ +FVI
Sbjct:   95 TPPTDTGKALYFTETTMRSLAKAVVWRVTAAVITLISGLVFSKNLKTAASIVGSDFVTKSGFMFLGERVWNKVNWGKGAKTDGAKRSLAKALLWRVFAAGNTLICGAFLAGDLSVALKIAGSDTVFKTFLFYINERMWARVEWGKEYEIEFVI 247          
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A6H5KZ71_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ71_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 7.490e-62
Identity = 100/160 (62.50%), Postives = 121/160 (75.62%), Query Frame = 1
Query:    1 PSTAAATPSTANLK-ALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
            P T  A P+T  L+ AL + E+  RS  KA+VWR+ A V+TL SGLVFS +L  A SIVGSDFVTKSGFMF GER WNKV WG+    D  KRSLAKA+LWRVFA  NTLICG FLA DLSVA KIAG+DT+FKT LF++NER W +++WGKEY+ ++ +
Sbjct:   86 PETPDAPPTTEELRPALVYGESAARSFVKALVWRLTAGVVTLVSGLVFSGSLATAMSIVGSDFVTKSGFMFAGERLWNKVKWGQDKSGDSTKRSLAKAVLWRVFAASNTLICGVFLAKDLSVASKIAGTDTLFKTALFFLNERAWTKIDWGKEYEPEYYL 245          
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A7S2UXG1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXG1_9STRA)

HSP 1 Score: 173 bits (439), Expect = 8.650e-52
Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 1
Query:   52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWG-----KGAKT--DGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
            FTET  RS+ KA++WR+ A +IT  +  +FS +L  AA IVG DFV+K+GFM++GER W+KVNWG     K +KT  D   RSL KAL+WR FA  NTL+   F+A D+S+A KIA SDTVFKT LFYINER+W+RVEWGKEY  ++ I
Sbjct:   79 FTETNKRSIVKALLWRLTAGIITFITSFIFSGDLSTAAKIVGGDFVSKAGFMYVGERVWSKVNWGRTKGNKDSKTAMDSKSRSLTKALVWRAFAATNTLVMSFFMAKDVSIAGKIASSDTVFKTFLFYINERIWSRVEWGKEYQLEYNI 227          
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A7R9ZQP1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQP1_9STRA)

HSP 1 Score: 157 bits (396), Expect = 7.050e-46
Identity = 82/142 (57.75%), Postives = 98/142 (69.01%), Query Frame = 1
Query:   52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
            F+ETT RS  KA  WR+ A  +T  + L FS +L  A SIVGSDF +KS  MF+GER  NK N G+ A  DGA RSLAKAL+WR+FA  NTL    F+A D+S+A KIAGSD +FKT L +  ER WA+VEWGKEYD  F I
Sbjct:   40 FSETTARSAVKAFAWRIIAGAVTFFTSLRFSGSLATALSIVGSDFFSKSFTMFIGERLMNKSNAGRTAGGDGAGRSLAKALIWRLFAICNTLTMAIFVAKDISIASKIAGSDAIFKTALMFFYERAWAKVEWGKEYDPGFSI 181          
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A4D9CUV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUV7_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.080e-45
Identity = 75/141 (53.19%), Postives = 105/141 (74.47%), Query Frame = 1
Query:   58 ETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKT-DGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
            E+ +RSL KA  WR+ AA+ITL++ L FS++ +MAASIV SDF++K+G M+LGER WNKV+WGK AK+ D A RS+ KA  WR FA  NTLI   F A  + VA +IA +DT+ KT L+ ++ER+W+R++WG+ YD ++ I
Sbjct:   67 ESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAASIVSSDFLSKAGTMYLGERLWNKVSWGKEAKSGDAASRSIMKAFAWRAFAMVNTLIISIFFAKSVKVAGQIASTDTIIKTSLYVVHERVWSRIDWGRSYDVEYNI 207          
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A1E7EW78_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EW78_9STRA)

HSP 1 Score: 154 bits (389), Expect = 9.140e-45
Identity = 76/142 (53.52%), Postives = 103/142 (72.54%), Query Frame = 1
Query:   52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
            F+ETT RS  KA++WRV A  +T  + L FS +++ A +IVGSDF++K+  MF+GER  NK N G+ +  DGA RSL KAL+WR+FA  NTL    F+A D+++A KIAGSD +FKT L ++ ER+WA++EWGKEY  DF I
Sbjct:   44 FSETTARSAVKALMWRVIAGSVTFITSLRFSGSMKTALTIVGSDFLSKAFTMFIGERLMNKSNAGRESGADGAGRSLMKALVWRLFAICNTLTMAIFIAKDITMASKIAGSDAIFKTGLMFVYERVWAKIEWGKEYQVDFFI 185          
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A7R9ZQR0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQR0_9STRA)

HSP 1 Score: 157 bits (396), Expect = 9.830e-45
Identity = 82/142 (57.75%), Postives = 98/142 (69.01%), Query Frame = 1
Query:   52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
            F+ETT RS  KA  WR+ A  +T  + L FS +L  A SIVGSDF +KS  MF+GER  NK N G+ A  DGA RSLAKAL+WR+FA  NTL    F+A D+S+A KIAGSD +FKT L +  ER WA+VEWGKEYD  F I
Sbjct:  132 FSETTARSAVKAFAWRIIAGAVTFFTSLRFSGSLATALSIVGSDFFSKSFTMFIGERLMNKSNAGRTAGGDGAGRSLAKALIWRLFAICNTLTMAIFVAKDISIASKIAGSDAIFKTALMFFYERAWAKVEWGKEYDPGFSI 273          
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A7S1Y2U4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y2U4_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.380e-43
Identity = 78/142 (54.93%), Postives = 98/142 (69.01%), Query Frame = 1
Query:   52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
            F+ETT RS  KA  WR+ A  +T  + L FS +L+ A +IVGSDF +K+  MF+GER  NK N G+    D  KRSLAKALLWR+FA  NTL    F+A DLS+A KIAGSD +FKT L +  ER+WA++EWGKEY  +F I
Sbjct:  109 FSETTGRSAVKAFCWRLIAGSVTFVTSLRFSGSLKTALTIVGSDFFSKAFTMFIGERLMNKSNAGRKGGADDVKRSLAKALLWRLFAIANTLTMAVFIAKDLSMASKIAGSDAIFKTALMFGYERVWAKIEWGKEYQVEFSI 250          
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Match: A0A7S1B4Q8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4Q8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 4.670e-43
Identity = 76/142 (53.52%), Postives = 101/142 (71.13%), Query Frame = 1
Query:   52 FTETTMRSLAKAIVWRVAAAVITLASGLVFSKNLRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLWRVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWGKEYDADFVI 477
            F E+T RSL K+I+WR+ A  +T  + L FS ++++A SIVGSDF +K+  MFLGER  N  + G+G+  D  KRSL KAL+WR+FA  NTL    F+A DLS+A KIA SD V KT + Y  ER+W++VEWGKEY+A+F I
Sbjct:  161 FKESTTRSLVKSIMWRMVAGTVTFITSLRFSGSVKVALSIVGSDFFSKALTMFLGERLMNNSSLGRGSSGDNKKRSLIKALIWRLFAIANTLTVAVFVAKDLSIASKIASSDAVIKTTMMYFYERIWSKVEWGKEYEAEFFI 302          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152568 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMA1_9STRA7.490e-106100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CRK4_9STRA1.570e-9090.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KZ71_9PHAE7.490e-6262.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UXG1_9STRA8.650e-5257.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9ZQP1_9STRA7.050e-4657.75Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A4D9CUV7_9STRA3.080e-4553.19Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1E7EW78_9STRA9.140e-4553.52Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7R9ZQR0_9STRA9.830e-4557.75Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1Y2U4_9STRA3.380e-4354.93Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1B4Q8_9STRA4.670e-4353.52Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:482443..482919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152568|gw1.63.110.1
DescriptionPredicted membrane protein (DUF2061)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2DTXE@1|root,2S6IU@2759|Eukaryota
Evalue4.67e-63
Seed ortholog2880.D8LRA7
Hectar predicted targeting categoryother localisation
TranscriptId152890
TrackFilteredModels1
ProteinId152568
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152568gene_10305Tribonema minus UTEX_B_3156 geneContig_63 482443..482919 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10305_1exon_10305_1Tribonema minus UTEX_B_3156 exonContig_63 482443..482919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10305CDS_10305Tribonema minus UTEX_B_3156 CDSContig_63 482443..482919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152568Trimin1|152568|gw1.63.110.1Tribonema minus UTEX_B_3156 polypeptideContig_63 482443..482919 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10305 ID=mRNA_10305|Name=jgi.p|Trimin1|152568|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=477bp|location=Sequence derived from alignment at Contig_63:482443..482919+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCTTCGACCGCCGCCGCAACGCCCAGCACAGCCAACTTGAAGGCGCTTTA
CTTCACGGAGACAACGATGCGCTCGCTCGCGAAGGCCATCGTGTGGCGCG
TCGCCGCCGCCGTCATCACGCTCGCCAGCGGCCTCGTCTTCTCCAAGAAC
CTCAGGATGGCGGCGTCCATCGTCGGCTCCGACTTCGTCACCAAGAGCGG
CTTCATGTTCCTGGGTGAGCGCGCCTGGAACAAGGTGAACTGGGGCAAGG
GCGCCAAGACGGACGGCGCGAAGCGCAGCCTCGCAAAGGCGCTGCTGTGG
CGCGTCTTCGCAACGGGGAACACGCTCATCTGCGGCGCGTTCCTCGCGGG
GGACCTGTCCGTCGCGCTCAAGATTGCGGGCTCGGACACTGTCTTCAAGA
CCATCCTCTTCTACATCAACGAGCGCATGTGGGCGCGCGTGGAGTGGGGC
AAGGAGTACGACGCAGATTTTGTCATC
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protein sequence of jgi.p|Trimin1|152568

>Trimin1|152568|gw1.63.110.1 ID=Trimin1|152568|gw1.63.110.1|Name=jgi.p|Trimin1|152568|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=159bp
PSTAAATPSTANLKALYFTETTMRSLAKAIVWRVAAAVITLASGLVFSKN
LRMAASIVGSDFVTKSGFMFLGERAWNKVNWGKGAKTDGAKRSLAKALLW
RVFATGNTLICGAFLAGDLSVALKIAGSDTVFKTILFYINERMWARVEWG
KEYDADFVI
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mRNA from alignment at Contig_63:482443..482919+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10305 ID=mRNA_10305|Name=jgi.p|Trimin1|152568|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=477bp|location=Sequence derived from alignment at Contig_63:482443..482919+ (Tribonema minus UTEX_B_3156 )
CCTTCGACCGCCGCCGCAACGCCCAGCACAGCCAACTTGAAGGCGCTTTA CTTCACGGAGACAACGATGCGCTCGCTCGCGAAGGCCATCGTGTGGCGCG TCGCCGCCGCCGTCATCACGCTCGCCAGCGGCCTCGTCTTCTCCAAGAAC CTCAGGATGGCGGCGTCCATCGTCGGCTCCGACTTCGTCACCAAGAGCGG CTTCATGTTCCTGGGTGAGCGCGCCTGGAACAAGGTGAACTGGGGCAAGG GCGCCAAGACGGACGGCGCGAAGCGCAGCCTCGCAAAGGCGCTGCTGTGG CGCGTCTTCGCAACGGGGAACACGCTCATCTGCGGCGCGTTCCTCGCGGG GGACCTGTCCGTCGCGCTCAAGATTGCGGGCTCGGACACTGTCTTCAAGA CCATCCTCTTCTACATCAACGAGCGCATGTGGGCGCGCGTGGAGTGGGGC AAGGAGTACGACGCAGATTTTGTCATC
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Coding sequence (CDS) from alignment at Contig_63:482443..482919+

>mRNA_10305 ID=mRNA_10305|Name=jgi.p|Trimin1|152568|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=477bp|location=Sequence derived from alignment at Contig_63:482443..482919+ (Tribonema minus UTEX_B_3156 )
CCTTCGACCGCCGCCGCAACGCCCAGCACAGCCAACTTGAAGGCGCTTTA
CTTCACGGAGACAACGATGCGCTCGCTCGCGAAGGCCATCGTGTGGCGCG
TCGCCGCCGCCGTCATCACGCTCGCCAGCGGCCTCGTCTTCTCCAAGAAC
CTCAGGATGGCGGCGTCCATCGTCGGCTCCGACTTCGTCACCAAGAGCGG
CTTCATGTTCCTGGGTGAGCGCGCCTGGAACAAGGTGAACTGGGGCAAGG
GCGCCAAGACGGACGGCGCGAAGCGCAGCCTCGCAAAGGCGCTGCTGTGG
CGCGTCTTCGCAACGGGGAACACGCTCATCTGCGGCGCGTTCCTCGCGGG
GGACCTGTCCGTCGCGCTCAAGATTGCGGGCTCGGACACTGTCTTCAAGA
CCATCCTCTTCTACATCAACGAGCGCATGTGGGCGCGCGTGGAGTGGGGC
AAGGAGTACGACGCAGATTTTGTCATC
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