mRNA_10290 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169351
Unique NamemRNA_10290
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|169351 vs. uniprot
Match: A0A835YM90_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM90_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.020e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 
Query:    1 MANEGHAIDVPTCHSVLAAASDTRTAQELLKRMKLWSLTPDMTTYTLAVRACRGPHALSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDADRALALFRDMEAAPRCAEAAADVRSWNRLLAALTAALRPDAVLETWGEMAQRGVAPDEISYAYALAARAARGERD 504
            MANEGHAIDVPTCHSVLAAASDTRTAQELLKRMKLWSLTPDMTTYTLAVRACRGPHALSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDADRALALFRDMEAAPRCAEAAADVRSWNRLLAALTAALRPDAVLETWGEMAQRGVAPDEISYAYALAARAARGERD
Sbjct:    1 MANEGHAIDVPTCHSVLAAASDTRTAQELLKRMKLWSLTPDMTTYTLAVRACRGPHALSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDADRALALFRDMEAAPRCAEAAADVRSWNRLLAALTAALRPDAVLETWGEMAQRGVAPDEISYAYALAARAARGERD 168
[Close]
BLAST of jgi.p|Trimin1|169351 vs. uniprot
Match: A0A835ZBY4_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.080e-6
Identity = 56/126 (44.44%), Postives = 70/126 (55.56%), Query Frame = 1 
Query:  121 DMTTYTLAVRACRGPHALSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRDADRALALFRDMEAAPRCAEAAADVRSWNRLLAALTAALRPDAVLETWGEMAQRGVAPDEISYAYALAARAARGE 498
            ++TTY LA++ACR   A+  A           XXXXXXXXXXXXXXXX  RD  RA+ +FRDMEA      A  D   WN LL  L+A   P + L+   +MA+RG AP   +Y     A A  G+
Sbjct:    9 NLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHL---AFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGD 131
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169351 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YM90_9STRA2.020e-87100.00PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835ZBY4_9STRA3.080e-644.44PPR_long domain-containing protein (Fragment) n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:379716..380219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169351|e_gw1.63.107.1
Hectar predicted targeting categoryother localisation
TranscriptId169673
TrackFilteredModels1
ProteinId169351
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169351gene_10290Tribonema minus UTEX_B_3156 geneContig_63 379716..380219 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10290_1exon_10290_1Tribonema minus UTEX_B_3156 exonContig_63 379716..380219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10290CDS_10290Tribonema minus UTEX_B_3156 CDSContig_63 379716..380219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169351Trimin1|169351|e_gw1.63.107.1Tribonema minus UTEX_B_3156 polypeptideContig_63 379716..380219 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10290 ID=mRNA_10290|Name=jgi.p|Trimin1|169351|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_63:379716..380219+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAATGAGGGGCACGCGATCGATGTACCGACCTGCCACAGCGTGCT
CGCTGCCGCTTCCGACACGAGAACCGCGCAGGAGCTGCTGAAGCGCATGA
AGCTGTGGAGCCTCACGCCGGATATGACCACATACACCCTGGCCGTGCGC
GCGTGCAGAGGCCCGCACGCCCTGTCGACGGCCGACGGCCTGCTACAGGA
GGCGAAGGCGGCGGGCCTAGAGCCCGACGCCGTCATGTTCAGCGCCATGC
TCAGGGCGTGCAAGCTCTCGCGCGACGCAGACCGCGCGCTGGCGCTCTTC
CGCGACATGGAGGCCGCGCCGCGCTGCGCGGAGGCGGCGGCCGACGTGCG
CTCGTGGAACCGCCTGCTTGCGGCCCTCACCGCGGCGCTGCGCCCCGACG
CTGTGCTCGAAACATGGGGCGAGATGGCGCAGCGCGGCGTCGCGCCCGAC
GAGATCTCGTACGCGTACGCGCTGGCCGCGCGCGCGGCGCGCGGCGAGCG
CGAC
back to top

protein sequence of jgi.p|Trimin1|169351

>Trimin1|169351|e_gw1.63.107.1 ID=Trimin1|169351|e_gw1.63.107.1|Name=jgi.p|Trimin1|169351|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
MANEGHAIDVPTCHSVLAAASDTRTAQELLKRMKLWSLTPDMTTYTLAVR
ACRGPHALSTADGLLQEAKAAGLEPDAVMFSAMLRACKLSRDADRALALF
RDMEAAPRCAEAAADVRSWNRLLAALTAALRPDAVLETWGEMAQRGVAPD
EISYAYALAARAARGERD
back to top

mRNA from alignment at Contig_63:379716..380219+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10290 ID=mRNA_10290|Name=jgi.p|Trimin1|169351|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_63:379716..380219+ (Tribonema minus UTEX_B_3156 )
ATGGCGAATGAGGGGCACGCGATCGATGTACCGACCTGCCACAGCGTGCT
CGCTGCCGCTTCCGACACGAGAACCGCGCAGGAGCTGCTGAAGCGCATGA
AGCTGTGGAGCCTCACGCCGGATATGACCACATACACCCTGGCCGTGCGC
GCGTGCAGAGGCCCGCACGCCCTGTCGACGGCCGACGGCCTGCTACAGGA
GGCGAAGGCGGCGGGCCTAGAGCCCGACGCCGTCATGTTCAGCGCCATGC
TCAGGGCGTGCAAGCTCTCGCGCGACGCAGACCGCGCGCTGGCGCTCTTC
CGCGACATGGAGGCCGCGCCGCGCTGCGCGGAGGCGGCGGCCGACGTGCG
CTCGTGGAACCGCCTGCTTGCGGCCCTCACCGCGGCGCTGCGCCCCGACG
CTGTGCTCGAAACATGGGGCGAGATGGCGCAGCGCGGCGTCGCGCCCGAC
GAGATCTCGTACGCGTACGCGCTGGCCGCGCGCGCGGCGCGCGGCGAGCG
CGAC
back to top

Coding sequence (CDS) from alignment at Contig_63:379716..380219+

>mRNA_10290 ID=mRNA_10290|Name=jgi.p|Trimin1|169351|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_63:379716..380219+ (Tribonema minus UTEX_B_3156 )
ATGGCGAATGAGGGGCACGCGATCGATGTACCGACCTGCCACAGCGTGCT
CGCTGCCGCTTCCGACACGAGAACCGCGCAGGAGCTGCTGAAGCGCATGA
AGCTGTGGAGCCTCACGCCGGATATGACCACATACACCCTGGCCGTGCGC
GCGTGCAGAGGCCCGCACGCCCTGTCGACGGCCGACGGCCTGCTACAGGA
GGCGAAGGCGGCGGGCCTAGAGCCCGACGCCGTCATGTTCAGCGCCATGC
TCAGGGCGTGCAAGCTCTCGCGCGACGCAGACCGCGCGCTGGCGCTCTTC
CGCGACATGGAGGCCGCGCCGCGCTGCGCGGAGGCGGCGGCCGACGTGCG
CTCGTGGAACCGCCTGCTTGCGGCCCTCACCGCGGCGCTGCGCCCCGACG
CTGTGCTCGAAACATGGGGCGAGATGGCGCAGCGCGGCGTCGCGCCCGAC
GAGATCTCGTACGCGTACGCGCTGGCCGCGCGCGCGGCGCGCGGCGAGCG
CGAC
back to top