mRNA_10270 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A836CBB9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBB9_9STRA) HSP 1 Score: 694 bits (1791), Expect = 3.690e-249 Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 1
Query: 1 MEVVISDSADDGKRANGSGXXXXXXXXXXXXXXXXXXXXXXXXXSAAAARRTASSEKRTAVSSGVKKRAQPAPPVGIRTGKRRMQVSAKQVAKRIKEHPDVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAANATILCSG 1200
MEVVISDSADDGKRANGSGXXXXXXXXXXXXXXXXXXXXXXXXXSAAAARRTASSEKRTAVSSGVKKRAQPAPPVGIRTGKRRMQVSAKQVAKRIKEHPDVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAANATILCSG
Sbjct: 1 MEVVISDSADDGKRANGSGXXXXXXXXXXXXXXXXXXXXXXXXXSAAAARRTASSEKRTAVSSGVKKRAQPAPPVGIRTGKRRMQVSAKQVAKRIKEHPDVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAANATILCSG 400
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A836CA16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA16_9STRA) HSP 1 Score: 231 bits (588), Expect = 3.940e-64 Identity = 137/320 (42.81%), Postives = 191/320 (59.69%), Query Frame = 1
Query: 217 PPVGIRTGKRRMQVSAKQVAKRIKEHPDVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAA 1176
PP+G R+GKRR V+ VA+RIKEHP + GRL+C +C TE AE+KT+V+RH+ +KHI+ + K R + L ++F + AKG+SL+D + ++R++TLRML+IS IP+ KL+GPLR ALE +SLT+SSHM EL+ V EEM L +E+AG+ ++VIFDGTT LAV A RWWSEFE+L +LT+E+ ++ S+GS ++A L++ + QATY LEGDGPL+M+ +D+I+ L S R DLLP+M FPAVQ LAA
Sbjct: 28 PPIGARSGKRRPTVNDSNVARRIKEHPGDFRKEEGRLFCIICVTECAEEKTAVNRHVKSSKHITRKAALEHRAIATKERIKTLRQHFNASQAKGSSLSDMESVYRLETLRMLMISGIPISKLDGPLRLALEHNNYSLTDSSHMRELIIVVAGEEMKALCEELAGQHIAVIFDGTTD-----HAEVLAVVA---------RWWSEFELLANILTVEETSQSDSKGSMLSALLRTEKL----------------------------------------QATYQLEGDGPLSMVAHDVIERLSSIRTDLLPDMDFPAVQMLAA 293
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A6S7JYZ8_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JYZ8_PARCT) HSP 1 Score: 112 bits (281), Expect = 5.910e-24 Identity = 92/312 (29.49%), Postives = 157/312 (50.32%), Query Frame = 1
Query: 271 VAKRIKEHPDVLAADA----GRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDT-----VTKSLIPKWRITANQRA-ITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDLLPNMLFPAVQQLAA 1176
VA RI+E P D G +C C+ E++ ++++ HI KH+S EK K + + +L Y E + G +L+ ++FR+ + + + I ++K+ R LE + LT+ ++MA+L+P V +EE +E+ GR++S++FDGTTR+ L++ +++F +D W + L++ L L + + G +A + S L + DT T+ L+ I AN A + E+ A +PFV+ TY LEGDGPL + YD I L++ R M P V Q+++
Sbjct: 37 VAVRIQEFPQECFKDTAIGKGAFFCEACREEISVKRSTIINHINTHKHLSGKEKLHQKAKRERDLAEVLRAYDEENHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINC-FRSILEESAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTRLGEALVI---------IVRF-LDSEWKIQQRLLRFLLLAK----SLAGEEVAREIISV---LAREDTGTAPATTRKLLD---IIANSEAKLKIEIAATVDAGEPFVKKTYSLEGDGPLVLEAYDAIIELENCVR----LMHMPNVTQISS 323
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A2B4RQL6_STYPI (Protein sidekick-2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQL6_STYPI) HSP 1 Score: 104 bits (259), Expect = 8.830e-20 Identity = 93/371 (25.07%), Postives = 156/371 (42.05%), Query Frame = 1
Query: 319 GRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRV-------------------LVTLLMTTLAVKADDV---------IQFQID----------------------------------------------------RWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGLDSARRDL-LPNMLFPAVQQLAANATI 1188
G+ +C C ++ KT ++ H+ +KH S E+ K A + ++ L EY + KG SL+ A +++ V +R + + +PLHK++ R LE SLT+S H+++ + + ++E +++EI GR +S+IFDGTT V L+ LL+ T + +++ + F I RWWS++E+++QV L A +G I + + SL ++ IT + A KPFVQ+TY LEGDG L + Y +++ L++ R+L PN AV + AN I
Sbjct: 1731 GQAFCNACCEQIGLKKTLIENHVKSSKHASGKERLEKKEARERDIAKSLKEYDNQFLPKGESLSVALRVYTVKVVRSFMKAGVPLHKIDC-FRELLEEEAFSLTSSRHLSDFIDVIAKDERKKVKEEIEGRDVSIIFDGTTHVAKALNIILRFVTEWKVHQQLIRLLLVTKPMNGEELAHQLLSTLSVDFSIPPSSLLAAARDRASVKNEAKFMKSWVGLFAHSARSRNAFKETTGQFPNSYLETRWWSKYEMMVQVHDLFGDTIAFVKGDQIPEVTARKLQDILNDQQKLASLKVEFAITVD-------------AMKPFVQSTYQLEGDGSLCLQAYQIVRKLEAEMRNLHFPNCC--AVIRNIANGNI 2085
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A6S7HVZ4_PARCT (RNA-directed DNA polymerase from transposon BS n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HVZ4_PARCT) HSP 1 Score: 85.1 bits (209), Expect = 4.440e-14 Identity = 50/162 (30.86%), Postives = 88/162 (54.32%), Query Frame = 1
Query: 271 VAKRIKEHPDVLAADA----GRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTR 744
VA RI+E P D G +C C+ E++ ++++ HI KH+S EK K + + +L Y E + G +L+ ++FR+ + + + I ++K+ R LE + LT+ ++MA+L+P V +EE +E+ GR++S++FDGTTR
Sbjct: 20 VAVRIQEFPQECFKDTAIGKGAFFCEACREEISVKRSTIINHINTHKHLSGKEKLHQKAKRERDLAEVLRAYDEENHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINC-FRSILEESAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTR 180
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A6S7G7N1_PARCT (RNA-directed DNA polymerase from transposon BS n=6 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G7N1_PARCT) HSP 1 Score: 85.1 bits (209), Expect = 7.480e-14 Identity = 50/162 (30.86%), Postives = 88/162 (54.32%), Query Frame = 1
Query: 271 VAKRIKEHPDVLAADA----GRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTR 744
VA RI+E P D G +C C+ E++ ++++ HI KH+S EK K + + +L Y E + G +L+ ++FR+ + + + I ++K+ R LE + LT+ ++MA+L+P V +EE +E+ GR++S++FDGTTR
Sbjct: 37 VAVRIQEFPQECFKDTAIGKGAFFCEACREEISVKRSTIINHINTHKHLSGKEKLHQKAKRERDLAEVLRAYDEENHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINC-FRSILEESAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTR 197
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A1X7T065_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T065_AMPQE) HSP 1 Score: 77.8 bits (190), Expect = 1.330e-11 Identity = 48/158 (30.38%), Postives = 85/158 (53.80%), Query Frame = 1
Query: 277 KRIKEHPDV-LAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRV 747
+R+KE P+ L G+L+C C+ EL T V H+ KH EK + ++ Y + + G +L++ Q++R ++ L + +PL+K++ R LE G L +++L+PF+ ++E+ + QEI R++SVIF+GTTR+
Sbjct: 6 QRVKEFPNENLTVSGGKLFCNGCREELGLKATVVKLHVKSNKHKLGKEKLQGRNKEEIDIAQAFDTYNQKEHLAGETLSNDLQVYRTKVVKTFLKAGVPLNKVD-LFRDILEEHGLQLAGRRVLSDLVPFICKQEVIKISQEIEEREVSVIFNGTTRI 162
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: UPI00138FABF8 (uncharacterized protein LOC116604706 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FABF8) HSP 1 Score: 66.6 bits (161), Expect = 3.850e-8 Identity = 79/290 (27.24%), Postives = 130/290 (44.83%), Query Frame = 1
Query: 253 QVSAKQVAKRIKEHPDVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRL---LSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTRVLVTLLMTTLAVKADDVIQFQIDRWWSEFEVLMQVLTLEQQWEAASRGSAIAAFLQSAAVKLPKNDTVTKSLIPKWRITANQRAITFELVCLQAAAKPFVQATYLLEGDGPLAMITYDLIQGL 1113
+VSAKQ + K D++ + ++C CK E+ K S+ + H+ K+ K LGK + L +Y + KG +L+ + ++FR+ ++ L S L+++E R E G SL++SS+M +L+PF+L EE + + GR++ G RV+ ++ RWWS +E VL ++W S S F +++ KL + N + E L K FV+ATY LEGDG L I ++ + L
Sbjct: 68 KVSAKQRVEEFKGE-DLIVRN-NEVYCAACK-EVVSVKMSI-----MKVHVKELNKEKLKK-LGKREEDIVQALHKYDQAHHPKGQTLSTSTRVFRIKVVQAFLKSGTSLNRVEF-FREIFEEAGMSLSSSSNMRQLIPFILEEEYKSTTS-MKGRRVWKNLTG--RVMP---------------RYNSTRWWSLWECAKVVL---EEWAHVS-ASHDEEFAKASWQKLSD------------ALLHNPVQLRVEFAALMELEK-FVKATYTLEGDGALVFIAFEKLDEL 312
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A7S0LT69_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LT69_9EUKA) HSP 1 Score: 58.5 bits (140), Expect = 2.870e-6 Identity = 50/173 (28.90%), Postives = 86/173 (49.71%), Query Frame = 1
Query: 238 GKRRMQVSAKQVAKRIKEHP--DVLAADAGRLWCRLCKTELAEDKTSVDRHIAITKHISAAEKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQ--LFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTR 744
G+R+ + S +++R++E P + AD G+L+CR CK + K ++ H H K+ L E+F N K ++ L+R + L L + + K++ L G L++ ++T+S +M + +P V E L+ EI G+K++VIFDGTTR
Sbjct: 30 GERKTRESLVPLSQRLREFPGQSFIIAD-GKLFCRCCKETIRNHKGTIATHAKGQTHEGKLVAWEKKLGTQNDVKEFLFEHF-RANPKELFASEPMDTLLWRFNVLETFLAAGLEPTKIDD-LAGLLKQ---AVTDSGNMRQFIPKVEGFEFRRLKNEIEGQKVTVIFDGTTR 196
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Match: A0A6S7KMY7_PARCT (RNA-directed DNA polymerase from transposon BS (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KMY7_PARCT) HSP 1 Score: 59.3 bits (142), Expect = 9.450e-6 Identity = 32/110 (29.09%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 415 EKDAAKVALGKTRSRLLSEYFAETNAKGASLTDAQQLFRVDTLRMLLISAIPLHKLEGPLRGALERGGHSLTNSSHMAELLPFVLREEMATLRQEIAGRKLSVIFDGTTR 744
++D + + + +L Y E + G +L+ ++FR+ + + + I ++K+ R LE + LT+ ++MA+L+P V +EE +E+ GR++S++FDGTTR
Sbjct: 23 DEDGEEAKRERDLAEVLRAYDEENHPIGETLSMNTRVFRLKVVTAFMKAGIAINKINC-FRSILEESAYKLTDRTNMAQLIPVVHQEEKKNTLEELTGREISIVFDGTTR 131 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350435 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10270 ID=mRNA_10270|Name=jgi.p|Trimin1|350435|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1472bp|location=Sequence derived from alignment at Contig_63:124395..127641- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGAGGTGGTCATCAGCGATTCCGCTGATGATGGCAAGAGGGCCAACGGback to top protein sequence of jgi.p|Trimin1|350435 >Trimin1|350435|estExt_Genemark1.C_Ctg_630014 ID=Trimin1|350435|estExt_Genemark1.C_Ctg_630014|Name=jgi.p|Trimin1|350435|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=401bp MEVVISDSADDGKRANGSGSDGGGSDGGGSDGGGSDGGGSDDSGSAAAARback to top mRNA from alignment at Contig_63:124395..127641- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10270 ID=mRNA_10270|Name=jgi.p|Trimin1|350435|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3247bp|location=Sequence derived from alignment at Contig_63:124395..127641- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_63:124395..127641- >mRNA_10270 ID=mRNA_10270|Name=jgi.p|Trimin1|350435|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1203bp|location=Sequence derived from alignment at Contig_63:124395..127641- (Tribonema minus UTEX_B_3156 )back to top |