mRNA_10265 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|82115
Unique NamemRNA_10265
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|82115 vs. uniprot
Match: A0A835YNE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.050e-39
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:   45 MLLLLLLPAAWPAAAVQDVQLKLHTLAARVEELPAAAVTGARVCLRDRARHRYRSIKSRAWTNARAHNLSA 257
            MLLLLLLPAAWPAAAVQDVQLKLHTLAARVEELPAAAVTGARVCLRDRARHRYRSIKSRAWTNARAHNLSA
Sbjct:    1 MLLLLLLPAAWPAAAVQDVQLKLHTLAARVEELPAAAVTGARVCLRDRARHRYRSIKSRAWTNARAHNLSA 71
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|82115 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YNE2_9STRA2.050e-39100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:85491..86038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|82115|CE82114_5
Hectar predicted targeting categorysignal peptide
TranscriptId82437
TrackFilteredModels1
ProteinId82115
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|82115gene_10265Tribonema minus UTEX_B_3156 geneContig_63 85491..86038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|82115Trimin1|82115|CE82114_5Tribonema minus UTEX_B_3156 polypeptideContig_63 85779..85994 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10265_2exon_10265_2Tribonema minus UTEX_B_3156 exonContig_63 85491..85578 -
exon_10265_1exon_10265_1Tribonema minus UTEX_B_3156 exonContig_63 85701..86038 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10265UTR3_10265Tribonema minus UTEX_B_3156 three_prime_UTRContig_63 85701..85778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10265CDS_10265Tribonema minus UTEX_B_3156 CDSContig_63 85779..85994 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10265UTR5_10265Tribonema minus UTEX_B_3156 five_prime_UTRContig_63 85995..86038 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10265 ID=mRNA_10265|Name=jgi.p|Trimin1|82115|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=426bp|location=Sequence derived from alignment at Contig_63:85491..86038- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGATCATCCTCAAGGTAGGGCGACCGGACGGCAGCCCGGGCCTATGCTG
CTGCTGCTGCTGCTGCCTGCTGCCTGGCCTGCTGCTGCTGTTCAAGATGT
TCAACTCAAACTTCACACACTGGCAGCCAGGGTGGAAGAACTCCCAGCAG
CAGCAGTAACAGGCGCAAGGGTGTGCCTCAGAGACAGGGCGCGGCACAGG
TATCGTAGCATCAAGAGCAGGGCTTGGACCAACGCACGAGCGCATAATCT
ATCCGCATAGCTGGTGCTGCGCTGGTCGCGGTCCAGCATATAGGAAGCCG
AACTCTGGAGCATTGACACGCTCAGCGGCAGGTGGCAGGTTGGCAGCAGC
AGCGCACGTCCCAGCGGCTTCAGGTCAGACCTGGTCGAAGCTGCTTGGCT
GAAAGAGCTGGCCGACTTAGACGACG
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protein sequence of jgi.p|Trimin1|82115

>Trimin1|82115|CE82114_5 ID=Trimin1|82115|CE82114_5|Name=jgi.p|Trimin1|82115|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=72bp
MLLLLLLPAAWPAAAVQDVQLKLHTLAARVEELPAAAVTGARVCLRDRAR
HRYRSIKSRAWTNARAHNLSA*
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mRNA from alignment at Contig_63:85491..86038-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10265 ID=mRNA_10265|Name=jgi.p|Trimin1|82115|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=548bp|location=Sequence derived from alignment at Contig_63:85491..86038- (Tribonema minus UTEX_B_3156 )
GAGATCATCCTCAAGGTAGGGCGACCGGACGGCAGCCCGGGCCTATGCTG
CTGCTGCTGCTGCTGCCTGCTGCCTGGCCTGCTGCTGCTGTTCAAGATGT
TCAACTCAAACTTCACACACTGGCAGCCAGGGTGGAAGAACTCCCAGCAG
CAGCAGTAACAGGCGCAAGGGTGTGCCTCAGAGACAGGGCGCGGCACAGG
TATCGTAGCATCAAGAGCAGGGCTTGGACCAACGCACGAGCGCATAATCT
ATCCGCATAGCTGGTGCTGCGCTGGTCGCGGTCCAGCATATAGGAAGCCG
AACTCTGGAGCATTGACACGCTCAGCGGCAGGTGGCAGGTGAGACTGATA
ATAGTGGCTGCTCCCTCACTGTCGGATGCCATTTGTTCCGGCGTCAGAGT
GCAGCCACTGTTGCTGCTCATAATCACCTCACCGCCCGCAACCTCCCGCG
CTCTTGCCAGGTTGGCAGCAGCAGCGCACGTCCCAGCGGCTTCAGGTCAG
ACCTGGTCGAAGCTGCTTGGCTGAAAGAGCTGGCCGACTTAGACGACG
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Coding sequence (CDS) from alignment at Contig_63:85491..86038-

>mRNA_10265 ID=mRNA_10265|Name=jgi.p|Trimin1|82115|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=216bp|location=Sequence derived from alignment at Contig_63:85491..86038- (Tribonema minus UTEX_B_3156 )
ATGCTGCTGCTGCTGCTGCTGCCTGCTGCCTGGCCTGCTGCTGCTGTTCA
AGATGTTCAACTCAAACTTCACACACTGGCAGCCAGGGTGGAAGAACTCC
CAGCAGCAGCAGTAACAGGCGCAAGGGTGTGCCTCAGAGACAGGGCGCGG
CACAGGTATCGTAGCATCAAGAGCAGGGCTTGGACCAACGCACGAGCGCA
TAATCTATCCGCATAG
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