mRNA_10216 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|4828
Unique NamemRNA_10216
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|4828 vs. uniprot
Match: A0A835ZGB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGB1_9STRA)

HSP 1 Score: 273 bits (699), Expect = 5.600e-92
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 2 
Query:   89 MRRAAARPSSHGKVTFRCPTLSRVIAFVVIVVLCQHQCDLYIIHGLHRLSLSLSRARSRRNLPPGREPKLAFIRGNVGNDLAALDRALTSQCSYCPREPPWPLYGGPRGSWKGGSWGGGGVTGARTRTASRQAA 490
            MRRAAARPSSHGKVTFRCPTLSRVIAFVVIVVLCQHQCDLYIIHGLHRLSLSLSRARSRRNLPPGREPKLAFIRGNVGNDLAALDRALTSQCSYCPREPPWPLYGGPRGSWKGGSWGGGGVTGARTRTASRQAA
Sbjct:    1 MRRAAARPSSHGKVTFRCPTLSRVIAFVVIVVLCQHQCDLYIIHGLHRLSLSLSRARSRRNLPPGREPKLAFIRGNVGNDLAALDRALTSQCSYCPREPPWPLYGGPRGSWKGGSWGGGGVTGARTRTASRQAA 134
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|4828 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZGB1_9STRA5.600e-92100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:337618..338212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|4828|CE4827_76
Hectar predicted targeting categorysignal peptide
TranscriptId5150
TrackFilteredModels1
ProteinId4828
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|4828gene_10216Tribonema minus UTEX_B_3156 geneContig_104 337618..338212 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10216_1exon_10216_1Tribonema minus UTEX_B_3156 exonContig_104 337618..338212 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10216UTR3_10216Tribonema minus UTEX_B_3156 three_prime_UTRContig_104 337618..337719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10216CDS_10216Tribonema minus UTEX_B_3156 CDSContig_104 337720..338124 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10216UTR5_10216Tribonema minus UTEX_B_3156 five_prime_UTRContig_104 338125..338212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|4828Trimin1|4828|CE4827_76Tribonema minus UTEX_B_3156 polypeptideContig_104 337720..338124 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10216 ID=mRNA_10216|Name=jgi.p|Trimin1|4828|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=595bp|location=Sequence derived from alignment at Contig_104:337618..338212- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTTCTGACGGAAAAAACACCTATGGATTGTATTCGGAGGCACAGCAACGG
GGGAAAGCGGGGCGGGGTCGTAGCTGTGTTTCTAGCGCATGCGCAGGGCA
GCCGCGCGGCCCTCGTCGCATGGAAAGGTTACCTTTCGTTGCCCGACCCT
CTCGCGTGTCATTGCCTTCGTCGTCATTGTCGTCTTGTGTCAACACCAGT
GTGACCTGTATATAATACACGGACTGCATCGGCTCTCTCTCTCTCTCTCG
CGCGCGCGCTCGCGAAGAAACCTGCCCCCGGGGCGGGAACCGAAACTAGC
GTTCATTCGTGGTAACGTAGGTAACGACTTGGCAGCGCTCGACCGCGCGC
TCACAAGTCAGTGCTCATACTGTCCTCGAGAGCCCCCGTGGCCCCTGTAC
GGGGGGCCAAGGGGGTCTTGGAAAGGTGGCAGTTGGGGGGGGGGGGGGGT
TACGGGCGCTCGCACTCGCACAGCAAGCAGGCAGGCAGCTTAGAGTTAGG
GTTAAAGTTAGGTTTAGCTAACCCTAACCCTACGCTAGCTACCACACACC
CCTGTGTCTGTGGGAGGCCGAGGGCAGAACACGACAACATCTGCC
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protein sequence of jgi.p|Trimin1|4828

>Trimin1|4828|CE4827_76 ID=Trimin1|4828|CE4827_76|Name=jgi.p|Trimin1|4828|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp
MRRAAARPSSHGKVTFRCPTLSRVIAFVVIVVLCQHQCDLYIIHGLHRLS
LSLSRARSRRNLPPGREPKLAFIRGNVGNDLAALDRALTSQCSYCPREPP
WPLYGGPRGSWKGGSWGGGGVTGARTRTASRQAA*
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mRNA from alignment at Contig_104:337618..338212-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10216 ID=mRNA_10216|Name=jgi.p|Trimin1|4828|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=595bp|location=Sequence derived from alignment at Contig_104:337618..338212- (Tribonema minus UTEX_B_3156 )
TTTCTGACGGAAAAAACACCTATGGATTGTATTCGGAGGCACAGCAACGG
GGGAAAGCGGGGCGGGGTCGTAGCTGTGTTTCTAGCGCATGCGCAGGGCA
GCCGCGCGGCCCTCGTCGCATGGAAAGGTTACCTTTCGTTGCCCGACCCT
CTCGCGTGTCATTGCCTTCGTCGTCATTGTCGTCTTGTGTCAACACCAGT
GTGACCTGTATATAATACACGGACTGCATCGGCTCTCTCTCTCTCTCTCG
CGCGCGCGCTCGCGAAGAAACCTGCCCCCGGGGCGGGAACCGAAACTAGC
GTTCATTCGTGGTAACGTAGGTAACGACTTGGCAGCGCTCGACCGCGCGC
TCACAAGTCAGTGCTCATACTGTCCTCGAGAGCCCCCGTGGCCCCTGTAC
GGGGGGCCAAGGGGGTCTTGGAAAGGTGGCAGTTGGGGGGGGGGGGGGGT
TACGGGCGCTCGCACTCGCACAGCAAGCAGGCAGGCAGCTTAGAGTTAGG
GTTAAAGTTAGGTTTAGCTAACCCTAACCCTACGCTAGCTACCACACACC
CCTGTGTCTGTGGGAGGCCGAGGGCAGAACACGACAACATCTGCC
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Coding sequence (CDS) from alignment at Contig_104:337618..338212-

>mRNA_10216 ID=mRNA_10216|Name=jgi.p|Trimin1|4828|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_104:337618..338212- (Tribonema minus UTEX_B_3156 )
ATGCGCAGGGCAGCCGCGCGGCCCTCGTCGCATGGAAAGGTTACCTTTCG
TTGCCCGACCCTCTCGCGTGTCATTGCCTTCGTCGTCATTGTCGTCTTGT
GTCAACACCAGTGTGACCTGTATATAATACACGGACTGCATCGGCTCTCT
CTCTCTCTCTCGCGCGCGCGCTCGCGAAGAAACCTGCCCCCGGGGCGGGA
ACCGAAACTAGCGTTCATTCGTGGTAACGTAGGTAACGACTTGGCAGCGC
TCGACCGCGCGCTCACAAGTCAGTGCTCATACTGTCCTCGAGAGCCCCCG
TGGCCCCTGTACGGGGGGCCAAGGGGGTCTTGGAAAGGTGGCAGTTGGGG
GGGGGGGGGGGTTACGGGCGCTCGCACTCGCACAGCAAGCAGGCAGGCAG
CTTAG
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