mRNA_10197 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173631
Unique NamemRNA_10197
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Match: A0A836CMY7_9STRA (Serine/threonine-protein kinase 38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMY7_9STRA)

HSP 1 Score: 994 bits (2569), Expect = 0.000e+0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 1
Query:    1 MSKKPAAAPASPPQPAAVSRPSDANRAKAERLKEMLANKYTKQKETTEEMSRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDASYFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLPRDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFAGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEETSRWGGQKKVGRRDKDNDFVGYTYSRRSVGGRESISTLFEQKAEGA 1518
            MSKKPAAAPASPPQPAAVSRPSDANRAKAERLKEMLANKYTKQKETTEEMSRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDASYFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLPRDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFAGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEETSRWGGQKKVGRRDKDNDFVGYTYSRRSVGGRESISTLFEQKAEGA
Sbjct:    1 MSKKPAAAPASPPQPAAVSRPSDANRAKAERLKEMLANKYTKQKETTEEMSRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDASYFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLPRDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFAGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEETSRWGGQKKVGRRDKDNDFVGYTYSRRSVGGRESISTLFEQKAEGA 506          
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Match: A0A835Z9M2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M2_9STRA)

HSP 1 Score: 841 bits (2172), Expect = 4.680e-305
Identity = 422/486 (86.83%), Postives = 450/486 (92.59%), Query Frame = 1
Query:   64 SDANRAKAERLKEMLANKYTKQKETTEEMSRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDASYFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLPRDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFAGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEETSRWGGQKKVGRRDKDNDFVGYTYSRRSVGGRESIST-LFEQKAEGA 1518
            S+ NR KAERLK+ML  KY+KQ+E TEEMSRRR ELEEQM+GMNLNEAQKKKYR+ELGK+EAQSRREGMRRLTTDDFT LSIIGRGAFGEVRLVRKND+GEV+ALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYM MEFLPGGDLMSLLMKEDTFPE AT+QYMAEMIQAVACVH LGY+HRDLKPDNILLDWQGHLKLTDLGLSKKVEIDA YFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLPRDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQF DVPDH+SRALS  C++F++SFVCNA+SRLGRTSMDEIR+HPWFAGLDW   +LR+APAPYKPD AD I  LL  IRTL+  D RMAAAVNQLT+NFDDFEEE+ SRWGGQKKVGRRDKDNDFVGYT+ R + G R +++T LF   AEGA
Sbjct:   25 SETNRLKAERLKDMLETKYSKQREDTEEMSRRRAELEEQMQGMNLNEAQKKKYRDELGKLEAQSRREGMRRLTTDDFTPLSIIGRGAFGEVRLVRKNDSGEVFALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMVMEFLPGGDLMSLLMKEDTFPEGATRQYMAEMIQAVACVHGLGYVHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDAGYFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLPRDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFFDVPDHISRALSTSCMDFLLSFVCNADSRLGRTSMDEIRSHPWFAGLDW--GALRAAPAPYKPDRADQIGGLLEQIRTLDARDGRMAAAVNQLTSNFDDFEEEDQSRWGGQKKVGRRDKDNDFVGYTFRRAAPGARGAVATSLFS--AEGA 506          
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Match: D8LEW4_ECTSI (Serine/threonine-protein kinase 38 (Ndr2 protein kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW4_ECTSI)

HSP 1 Score: 595 bits (1533), Expect = 3.810e-209
Identity = 295/385 (76.62%), Postives = 331/385 (85.97%), Query Frame = 1
Query:   82 KAERLKEMLANKYTKQKETTEEMSRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDASYFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLP---------RDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFAGL 1209
            KAERLKEML  KY++QKE T+EM +RR +LE QM  M+L+E QKK YREELGKMEAQ+ RE  +RL+TDDF  L+IIGRGAFGEVRLVRK DTG VWALKSMTK+AMV KNQVGHVQAERD+LA++DN W+VGL++SFQDDINLYM MEFLPGGDLMSLLMKED FPE AT+QYMAEMI AVA VH LGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEI  SYFG  PEDLNV+AAAAR DTRP+P +   HVRG T +          +DRKLA+STVGTPDYIAPEVL+QKGYG ECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQF +VPD+V R LSP+C++FMMSFVC + +RLGR +MDEI++HPWFA L
Sbjct:   28 KAERLKEMLKQKYSRQKEETDEMEKRRNKLEAQMNEMSLSEEQKKTYREELGKMEAQTMRETRKRLSTDDFNSLAIIGRGAFGEVRLVRKKDTGVVWALKSMTKDAMVVKNQVGHVQAERDILAASDNAWVVGLEYSFQDDINLYMIMEFLPGGDLMSLLMKEDIFPEVATRQYMAEMIVAVATVHRLGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEISPSYFGVKPEDLNVHAAAAREDTRPMPAKPVGHVRGHTGIQGPNKGNKVNKDRKLAFSTVGTPDYIAPEVLAQKGYGAECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFFNVPDNVVRKLSPECMDFMMSFVCESSTRLGRQNMDEIKSHPWFASL 412          
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Match: A0A6H5KD50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD50_9PHAE)

HSP 1 Score: 584 bits (1505), Expect = 1.220e-202
Identity = 307/471 (65.18%), Postives = 361/471 (76.65%), Query Frame = 1
Query:   82 KAERLKEMLANKYTKQKETTEEMSRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKK-VEIDASYFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLP---------RDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFAGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEETSRWGGQKKVGRR-DKDNDFVGYTYSRR 1461
            KAERLKEML  KY++QKE T+EM +RR +LE QM  M+L+E QKK YREELGKMEAQ+ RE  +RL+TDDF  L+IIGRGAFGEVRLVRK DTG VWALKSMTK+AMV KNQVGHVQAERD+LA++DN W+VGL++SFQDDINLYM MEFLPGGDLMSLLMKED FPEAATKQ +           A   +H    P          L  +      + VEI  SYFG  PEDLNV+AAAAR DTRP+P +   HVRG T +          +DRKLA+STVGTPDYIAPEVL+QKGYG ECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQF +VPD+V R LSP+C++FMMSFVC + +RLGR +MDEI++HPWFA L+W +  LR  PAPYKPDGAD ++ LL S++ +  +D  M   V ++TANFDDF+EE+ +R+GGQKKV RR DKDN FVGYTY R+
Sbjct:   28 KAERLKEMLKQKYSRQKEETDEMEKRRNKLEAQMNEMSLSEEQKKTYREELGKMEAQTMRETRKRLSTDDFNSLAIIGRGAFGEVRLVRKKDTGVVWALKSMTKDAMVVKNQVGHVQAERDILAASDNAWVVGLEYSFQDDINLYMIMEFLPGGDLMSLLMKEDIFPEAATKQAIHGRDDRCCRNRARLGLH---PPRPEARQHPARLAGSPQAYGPRAVEISPSYFGVKPEDLNVHAAAAREDTRPMPAKPVGHVRGHTGMQGPNKGNKVNKDRKLAFSTVGTPDYIAPEVLAQKGYGAECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFFNVPDNVVRKLSPECMDFMMSFVCESSTRLGRQNMDEIKSHPWFASLNWNT--LRDGPAPYKPDGADDMSVLLESVKHVAATDPEMPRLVKKITANFDDFKEEDATRFGGQKKVVRRGDKDNHFVGYTYKRK 493          
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Match: A0A7S1TZ34_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZ34_9STRA)

HSP 1 Score: 502 bits (1292), Expect = 1.190e-171
Identity = 262/475 (55.16%), Postives = 333/475 (70.11%), Query Frame = 1
Query:   79 AKAERLKEMLANKYTKQKETTEEMSRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDASYFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLPRDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFAGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEETSRWGGQKKVGRRDKDNDFVGYTYSRRSVGGRESIST-LFE 1500
            A+A+RLK  L  KY   + T E    +R+ LE QM  M +++A++ +   E  +   Q R E  RRLTT+ FT L +IGRGAFGEVRLVRK DT +++ALKSM KEAMV KNQV HV AERDVLA ADN WIV LQ+SFQDD +LYM MEFLPGGDLM+LLM+EDTF E  T+ YMAEM  AVA VHAL YIHRDLKPDN+LLDW GHLKLTDLGL KKV++      A   DL+              +             R+R L YSTVGTPDYIAPEVLSQ+GY   CDWWSLGVIMYECLVGYTPFYAD+P+MTCRKILRW++FL++P    + LS +C++F++S +  A+ RLGR  +DEI+ HPWF+GLDW +  LRS PAPY+P+G++ +  LL  +  ++ SDAR    + Q+T NFD+F+EE   +WGG+K++ R D+D +F+GY++ R+    R +I   LF+
Sbjct:   12 ARADRLKSYLEGKYKGMRRTNEATQAQRESLEGQMSQMQISQAERDRMLNEFDRRVGQERIESRRRLTTEAFTSLVVIGRGAFGEVRLVRKKDTKKIFALKSMIKEAMVVKNQVSHVIAERDVLAEADNPWIVRLQYSFQDDTHLYMVMEFLPGGDLMTLLMREDTFTEDKTRVYMAEMCLAVASVHALQYIHRDLKPDNVLLDWDGHLKLTDLGLCKKVDVPE----ARGLDLSAEXXXXXXXXXXXSEMVVETSGSGRKTHRERHLVYSTVGTPDYIAPEVLSQQGYNHSCDWWSLGVIMYECLVGYTPFYADEPIMTCRKILRWRKFLEIPAATQQKLSSECVDFLLSLMTAADRRLGRNGIDEIKAHPWFSGLDWDN--LRSQPAPYRPEGSEVLRDLLGELEGVDKSDARYEILLEQITLNFDNFDEE--GKWGGRKRIRRGDRDANFLGYSFKRKQQEARAAIGAELFD 478          
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Match: A0A7R9YG78_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG78_9STRA)

HSP 1 Score: 493 bits (1270), Expect = 2.390e-168
Identity = 253/473 (53.49%), Postives = 331/473 (69.98%), Query Frame = 1
Query:   79 AKAERLKEMLANKYTKQKETTEEMSRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDASYFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLPRDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFAGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEETSRWGGQKKVGRRDKDNDFVGYTYSRRSVGGRESISTLF 1497
            AKA+RLK  L  KY   +   EE+ +RR                            A  R E  RRLTTD FT L +IGRGAFGEVRLVRK DT +++ALKSM KEAMV KNQVGHV+AERDVLA ADN WIV LQ++FQD+ NLYM MEFLPGGDLM+LLM+EDTFPE  TK YMAEM  AVA VH+L YIHRDLKPDN+LLDW GHLKLTDLGL KKV++  +       +++  A+     +  + +R      G+    R+R L YSTVGTPDYIAPEVLSQ+GY   CDWWSLGVIMYECLVGYTPFYAD+P+MTCRKILRW++FL++P    ++LSP+C++F++S + +A+ R+GR  ++EI+ HPWF G+DW +  LR+ PAPY+P+G++ +  LL+ + T++ +D R    + Q+T NFD+F+EE    WGG++++ + D++NDF+GY++ R+    R  +  LF
Sbjct:   14 AKADRLKNYLEGKYKGMRRNNEEVDQRRANXXXXXXXXXXXXXXXXXXXXXXXXQVAADRIEERRRLTTDAFTSLVVIGRGAFGEVRLVRKKDTKQIYALKSMIKEAMVVKNQVGHVRAERDVLAEADNPWIVRLQYTFQDETNLYMVMEFLPGGDLMTLLMREDTFPEDKTKIYMAEMCLAVASVHSLNYIHRDLKPDNVLLDWDGHLKLTDLGLCKKVDVPEAKGIDIASEVSAAASEGEGKSSLVVERSNA---GKKKTHRERHLVYSTVGTPDYIAPEVLSQQGYDHSCDWWSLGVIMYECLVGYTPFYADEPIMTCRKILRWRKFLEIPAATQQSLSPECVDFLLSLMTSADRRVGRHGIEEIKEHPWFRGMDWEN--LRAQPAPYRPEGSEVLRDLLAELETVDVNDRRYRLLIEQITTNFDNFDEE--GNWGGKRRM-KIDRNNDFLGYSFKRKQAEARGQVGELF 478          
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Match: A0A812SRU8_SYMMI (STK38L protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SRU8_SYMMI)

HSP 1 Score: 493 bits (1268), Expect = 1.080e-167
Identity = 261/500 (52.20%), Postives = 342/500 (68.40%), Query Frame = 1
Query:   76 RAKAERLKEMLANKYTKQKETTEEMSRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKND--TGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDASYFGATPED--LNVNAAAARLDTR--------------PLPDRKATHVRGQTNLP--------------------RDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFAGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEETSRWGGQKKVGRRDKDNDFVGYTYSRR 1461
            RA+AE  K  L  KY K K+   E   RR+ LE+ M+ M L ++ K++YR+ L K+EA   R+  +RLTT+DF  L++IG+GAFGEVRLVR  +  + E++A+KSM KEAM+ KNQVGHV+AERD+L  ++N WIV L +SFQD+ NLYM ME+LPGGDLM LLM+EDTF EAATK Y+AE++QAV+ VHALGYIHRDLKPDN+LLDW GHLKLTDLGL KKV++     G  P+   +N++AAAA  D++              P    +A      ++ P                    RDR L YSTVGTPDYIAPEVL Q+GYG  CDWWSLGVIMYECLVGYTPFYA++PV+TCRKILRWQQFL+VP  V   LSP+CL F+ S + +A  R+G+  +D IR HPWF GLDW +  LR  PAPY P+G+  + + L  +R ++ S  +  + + Q+T NFD FE++  + W   K V R+D+D++F+GYT+ R+
Sbjct:   18 RARAEAAKASLEKKYGKMKKDRTEAESRRKSLEDHMEAMQLTDSDKERYRDYLMKVEADDMRDQRKRLTTNDFEALALIGKGAFGEVRLVRMKERFSREIYAMKSMLKEAMIMKNQVGHVRAERDILTESENPWIVTLYYSFQDNRNLYMVMEYLPGGDLMGLLMREDTFSEAATKFYIAELVQAVSSVHALGYIHRDLKPDNVLLDWNGHLKLTDLGLCKKVDMGPDD-GPAPDAAAINMHAAAALGDSKIGASAGVPKSDADCPSSKTQAMDTSAPSSTPAASELEPSASSAPGGTKPTHRDRGLVYSTVGTPDYIAPEVLLQRGYGKTCDWWSLGVIMYECLVGYTPFYAEEPVLTCRKILRWQQFLEVPTDVEGTLSPECLNFLFSLMTDASKRIGKNGVDSIRAHPWFDGLDWDT--LRDQPAPYTPEGSIQMKSALQELRDVDSSSPKFRSLLAQITTNFDKFEDD-GNLWCSSKAVTRKDRDHEFIGYTFKRK 513          
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Match: W7TRL9_9STRA (Serine threonine-protein kinase cbk1 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRL9_9STRA)

HSP 1 Score: 493 bits (1270), Expect = 1.740e-167
Identity = 260/441 (58.96%), Postives = 311/441 (70.52%), Query Frame = 1
Query:  238 KMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDASYFGATPEDLNVNAAAARLDTRPLPDRKATHV-----------------------RGQTNLP-----RDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWF--AGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEE--TSRWGGQKKVGRRDKDNDFVGYTYSRRS 1464
            +MEA+ R E  RRLTT+DF  L IIGRGAFGEVRLVRK   GE++A+KSM KEAMV KNQVGHV+AERDVLA ADN WIV L +SFQDD  L+M MEFLPGGDLM+LL++EDTFPEAAT+QYMAEMI AVA VHALGYIHRDLKPDNILLDW+GHLKL+D+GL KK+E   ++       L+++A+       P P   A                             ++LP     RDR+LAYSTVGTPDYIAPEVL QKGYG ECDWWSLGVIMYECLVGYTPFYA++PVMTCRKILRWQQ L+VP  V   +SP CL+FM S +  AE RLGR   +EI+ HPWF  +GLDW +  L++APAPYKP+G + + A+L  +R +   D R    + Q+TANFDDF E E      GG    GR++K ++F+GYTY R S
Sbjct:   80 RMEAEYRTEQQRRLTTNDFDPLVIIGRGAFGEVRLVRKRADGEIYAMKSMIKEAMVRKNQVGHVRAERDVLAVADNPWIVTLHYSFQDDHMLHMVMEFLPGGDLMTLLIREDTFPEAATRQYMAEMIMAVASVHALGYIHRDLKPDNILLDWEGHLKLSDMGLCKKMETGEAHLLTDNASLSIHASPHGAGACPTPPASAHFAPPPHXXPHPQYXXXXXXXXXXXXXSTSSLPPSSPARDRRLAYSTVGTPDYIAPEVLMQKGYGKECDWWSLGVIMYECLVGYTPFYAEEPVMTCRKILRWQQHLEVPGEVRARVSPACLDFMFSLMAPAERRLGRHGWEEIKAHPWFVESGLDWDA--LKTAPAPYKPEGWEVLRAMLEDLRQVPKEDVRYRPLLEQITANFDDFPETEGGLGAVGGGGAAGRKEKGHEFIGYTYKRGS 518          
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Match: A0A835Z234_9STRA (NDR and related serine/threonine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z234_9STRA)

HSP 1 Score: 467 bits (1201), Expect = 1.740e-157
Identity = 260/485 (53.61%), Postives = 327/485 (67.42%), Query Frame = 1
Query:   58 RPSDANRAKAERLKEMLANKYTKQKET---TEEMSRRRQE-----LEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDA--SYFGATPEDLNVNAAAARLDTRP-LPDRKATHVRGQTNLP---RDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFA---GLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEETSRWGGQKKVG-RRDKDNDFVGYTYSR 1458
            RP     +  +R+K  LA  Y +QK     TE M R   +     LE +M+ M ++E  K ++R+++ +    S RE  RR+   DF  L+IIGRGAFGEVRLVRK DT EV+A+KSM KE M+ KNQ+ HV+AERDV+A ADN WIVGLQ+SF DDINLYM ME+LPGGDLM LLMK DTF EAAT+ YMAE   A+A VH LGYIHRDLKPDNIL+DW GH+KLTDLGL  ++E D   + F  T   +++++A       P +P  +    +G T  P   RDR L YSTVGTPDYIAPEVL QKGYG ECDWWSLGVIMYECLVGYTPFYA+DPV TCRKIL W++FL+VP   + A+S  C++F+++ V +AE+RLGR  + +I  H WFA   G+DW+   +R   +PY P+G+   A LL  +R     D   AAAV  LTANF+ FEE  +  W    +   RRDKD +F+GYTY R
Sbjct:    7 RPGGGGVSAGQRVKAKLALAYIEQKYANLKTENMERAESQKRADLLEAKMEQMGIHENDKLRFRKQVWEECLSSIRERRRRILKTDFEPLAIIGRGAFGEVRLVRKRDTREVFAVKSMLKEHMILKNQITHVKAERDVMAEADNPWIVGLQYSFHDDINLYMVMEYLPGGDLMGLLMKHDTFSEAATRMYMAETAMAIAHVHELGYIHRDLKPDNILIDWTGHVKLTDLGLCTRIEQDPMLNVFDVTKHGMDIDSADITSPPPPTVPTGQGVWAKGNTPPPPTHRDRALVYSTVGTPDYIAPEVLLQKGYGKECDWWSLGVIMYECLVGYTPFYAEDPVTTCRKILNWRRFLEVPREAAAAVSSLCIDFLLALVTDAEARLGRRGLGDIMAHAWFADWAGMDWSR--IRELRSPYIPEGSARRAELLERLRXXXXGDEGFAAAVAALTANFEKFEE--SGLWEQPNRAAHRRDKDQNFIGYTYKR 487          
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Match: A0A6H5L5B9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5B9_9PHAE)

HSP 1 Score: 453 bits (1165), Expect = 6.900e-151
Identity = 245/457 (53.61%), Postives = 307/457 (67.18%), Query Frame = 1
Query:  142 EEMSRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTRLSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVLASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQYMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDA-SYFGATPED------------LNVNAAAARLDTRPL---PDRKATHVRGQTNLPRDRKLAYSTVGTPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKILRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWFAGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLTANFDDFEEEETSRWGGQKKVG-RRDKDNDFVGYTYSRR 1461
            EE  ++ Q L  +M  M + E+++ +YR+ + +    + REG +RLT  DF  L++IGRGAFGEVRLVRK DTGEV+A+KSM KE M+ KNQV HV+AERDV+A AD+ WIV L +SFQDD+NLYM MEFLPGGDLM LLMK DTF E AT+ YMAE   A+A VH LGYIHRDLKPDNILLDW GH+KLTDLGL  K++ +  +     PED            +   A AA+         P R ++   G     RDR L YSTVGTPDYIAPEVL QKGYG ECDWWSLGVIM+ECLVGYTPFYA+DPV TCRKIL W +FL++P+  + ++S  C+ F+ S +  A  RLG+  + E+    W AG+ W    +R   APY  DGA  +  +L+ +  LEP DAR AAAV  +T+NFD F +    RW    +V  RRD+DNDF+GYTY R+
Sbjct:  115 EESQQKIQILNARMDQMGIAESERDQYRQRVWQECLTNIREGRKRLTKADFEALAMIGRGAFGEVRLVRKRDTGEVYAMKSMLKEHMILKNQVTHVKAERDVMAEADDPWIVKLMYSFQDDVNLYMVMEFLPGGDLMGLLMKYDTFGEDATRVYMAETAMAIARVHELGYIHRDLKPDNILLDWDGHVKLTDLGLCTKMQPEKLNLLPDVPEDDLMEGMEVCQPPIAGQAGAAQAGGAGXGGDPGRSSSATPGH----RDRTLVYSTVGTPDYIAPEVLQQKGYGKECDWWSLGVIMFECLVGYTPFYAEDPVTTCRKILNWPRFLEIPEETAISVSEPCMRFLTSLISAAPDRLGKNGVGEVMASTWLAGVPWER--IREMRAPYVTDGAARVKDVLAQLSKLEPGDARQAAAVELVTSNFDKFSDNGEVRWEKAARVAQRRDRDNDFIGYTYKRK 565          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173631 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMY7_9STRA0.000e+0100.00Serine/threonine-protein kinase 38 n=1 Tax=Tribone... [more]
A0A835Z9M2_9STRA4.680e-30586.83Kinase-like domain-containing protein n=1 Tax=Trib... [more]
D8LEW4_ECTSI3.810e-20976.62Serine/threonine-protein kinase 38 (Ndr2 protein k... [more]
A0A6H5KD50_9PHAE1.220e-20265.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1TZ34_9STRA1.190e-17155.16Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YG78_9STRA2.390e-16853.49Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812SRU8_SYMMI1.080e-16752.20STK38L protein n=1 Tax=Symbiodinium microadriaticu... [more]
W7TRL9_9STRA1.740e-16758.96Serine threonine-protein kinase cbk1 n=4 Tax=Monod... [more]
A0A835Z234_9STRA1.740e-15753.61NDR and related serine/threonine kinase n=1 Tax=Tr... [more]
A0A6H5L5B9_9PHAE6.900e-15153.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:209742..215045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173631|e_gw1.104.65.1
DescriptionSerine/Threonine protein kinases, catalytic domain
COG categoryT
Max annot lvl4776|Peronosporales
EggNOG OGsKOG0605@1|root,KOG0605@2759|Eukaryota,3Q8FH@4776|Peronosporales
Evalue3.29e-150
Seed ortholog164328.Phyra86801
Hectar predicted targeting categoryother localisation
TranscriptId173953
TrackFilteredModels1
ProteinId173631
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173631gene_10197Tribonema minus UTEX_B_3156 geneContig_104 209742..215045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173631Trimin1|173631|e_gw1.104.65.1Tribonema minus UTEX_B_3156 polypeptideContig_104 209742..215045 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10197_6exon_10197_6Tribonema minus UTEX_B_3156 exonContig_104 209742..210157 -
exon_10197_5exon_10197_5Tribonema minus UTEX_B_3156 exonContig_104 210885..211254 -
exon_10197_4exon_10197_4Tribonema minus UTEX_B_3156 exonContig_104 211800..211949 -
exon_10197_3exon_10197_3Tribonema minus UTEX_B_3156 exonContig_104 212573..212791 -
exon_10197_2exon_10197_2Tribonema minus UTEX_B_3156 exonContig_104 213576..213717 -
exon_10197_1exon_10197_1Tribonema minus UTEX_B_3156 exonContig_104 214822..215045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10197CDS_10197Tribonema minus UTEX_B_3156 CDSContig_104 214822..215045 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10197 ID=mRNA_10197|Name=jgi.p|Trimin1|173631|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1521bp|location=Sequence derived from alignment at Contig_104:209742..215045- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAAAAGCCTGCAGCGGCACCGGCGTCGCCCCCACAGCCAGCGGC
TGTCAGCAGGCCTAGCGATGCCAATCGAGCAAAAGCGGAGCGGCTGAAAG
AAATGCTTGCCAACAAGTACACGAAGCAGAAGGAGACCACGGAAGAGATG
AGCAGGCGGCGCCAGGAGCTTGAGGAGCAGATGAAGGGCATGAATCTGAA
CGAGGCGCAGAAGAAGAAGTACCGCGAGGAACTCGGCAAGATGGAGGCGC
AGAGCAGGCGCGAGGGCATGCGGCGCCTGACCACGGACGACTTCACCAGG
CTGAGCATCATCGGCCGCGGCGCGTTCGGCGAAGTGCGCCTCGTCCGCAA
GAACGACACGGGCGAGGTCTGGGCGCTCAAATCGATGACGAAAGAAGCCA
TGGTCCACAAGAATCAGGTCGGACACGTGCAGGCGGAGCGCGATGTGCTG
GCATCCGCAGACAACAACTGGATTGTGGGCCTGCAGTTCTCCTTCCAGGA
CGACATCAATCTGTACATGGCGATGGAGTTCCTGCCGGGCGGCGACCTCA
TGAGCCTGCTCATGAAAGAAGACACTTTCCCCGAGGCGGCAACAAAGCAG
TACATGGCAGAGATGATCCAGGCTGTGGCCTGCGTGCACGCGCTTGGTTA
CATACACCGCGACCTGAAGCCAGACAACATCCTGCTGGACTGGCAGGGGC
ACCTGAAGCTCACCGACCTGGGCCTCTCCAAGAAGGTCGAGATCGACGCC
AGCTACTTTGGCGCGACCCCAGAGGACCTCAACGTCAACGCCGCAGCAGC
ACGGCTCGACACGCGCCCCCTCCCCGACAGGAAGGCCACGCACGTACGCG
GGCAGACCAACCTCCCGCGCGACCGCAAGCTCGCCTACTCCACCGTGGGA
ACCCCCGACTACATCGCGCCGGAGGTCCTCAGCCAGAAGGGCTACGGGCC
CGAGTGCGACTGGTGGAGCCTGGGGGTGATCATGTACGAGTGCCTCGTGG
GGTACACGCCATTCTACGCGGATGACCCCGTGATGACGTGCAGGAAGATC
CTGCGCTGGCAGCAGTTCCTCGACGTGCCGGACCACGTCAGCCGCGCGCT
CTCACCGCAATGCCTCGAGTTCATGATGTCCTTTGTGTGCAACGCGGAGT
CGCGCCTCGGCCGCACCTCCATGGACGAAATCCGCAATCACCCCTGGTTC
GCGGGGCTCGACTGGACCTCAGCATCGCTCCGCTCCGCCCCCGCCCCCTA
CAAGCCCGACGGCGCCGACTCCATTGCAGCGCTGCTCAGCAGCATCAGGA
CCCTGGAGCCGTCGGACGCGCGCATGGCTGCCGCGGTGAATCAGCTCACC
GCCAACTTTGATGATTTCGAAGAGGAGGAGACGAGCAGGTGGGGGGGGCA
GAAGAAGGTCGGGCGGCGCGACAAGGACAATGATTTCGTTGGGTACACGT
ATTCGCGGCGCTCCGTGGGGGGGCGCGAGTCGATTTCCACTCTATTCGAG
CAGAAGGCTGAGGGGGCCTAG
back to top

protein sequence of jgi.p|Trimin1|173631

>Trimin1|173631|e_gw1.104.65.1 ID=Trimin1|173631|e_gw1.104.65.1|Name=jgi.p|Trimin1|173631|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=507bp
MSKKPAAAPASPPQPAAVSRPSDANRAKAERLKEMLANKYTKQKETTEEM
SRRRQELEEQMKGMNLNEAQKKKYREELGKMEAQSRREGMRRLTTDDFTR
LSIIGRGAFGEVRLVRKNDTGEVWALKSMTKEAMVHKNQVGHVQAERDVL
ASADNNWIVGLQFSFQDDINLYMAMEFLPGGDLMSLLMKEDTFPEAATKQ
YMAEMIQAVACVHALGYIHRDLKPDNILLDWQGHLKLTDLGLSKKVEIDA
SYFGATPEDLNVNAAAARLDTRPLPDRKATHVRGQTNLPRDRKLAYSTVG
TPDYIAPEVLSQKGYGPECDWWSLGVIMYECLVGYTPFYADDPVMTCRKI
LRWQQFLDVPDHVSRALSPQCLEFMMSFVCNAESRLGRTSMDEIRNHPWF
AGLDWTSASLRSAPAPYKPDGADSIAALLSSIRTLEPSDARMAAAVNQLT
ANFDDFEEEETSRWGGQKKVGRRDKDNDFVGYTYSRRSVGGRESISTLFE
QKAEGA*
back to top

mRNA from alignment at Contig_104:209742..215045-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10197 ID=mRNA_10197|Name=jgi.p|Trimin1|173631|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5304bp|location=Sequence derived from alignment at Contig_104:209742..215045- (Tribonema minus UTEX_B_3156 )
ATGAGCAAAAAGCCTGCAGCGGCACCGGCGTCGCCCCCACAGCCAGCGGC TGTCAGCAGGCCTAGCGATGCCAATCGAGCAAAAGCGGAGCGGCTGAAAG AAATGCTTGCCAACAAGTACACGAAGCAGAAGGAGACCACGGAAGAGATG AGCAGGCGGCGCCAGGAGCTTGAGGAGCAGATGAAGGGCATGAATCTGAA CGAGGCGCAGAAGAAGAAGTACCGGTGAGCGCAAAAGTAGGTTGCTAAAT AGATACCATGTTGTTTTCTAATTTCATGCCGTAAAGCCGACGATCGGGCA GCCAGTTTCGTTGCGAGCAGCCACTGGCGGCTCCACATCTGCTAGGAGGT TTGAGATCGCCTGTCACCATAGGTGTGCTGCTGTTCTGTCAAGCATTTGC AACAAAAGGTGACAAGCGATCACGCTTTGGATGGGCATGCTTCAGGTACA ATGGGGCACGTCTATGGAAAGAGGCGTTTCTGCACTAACTTCAAATTGCA GCGCACCATTCAGTTTTTGGTGTTCAGCATACAACCAGACCCTCACCGTT TCTGTCCACACTTGTACAAACGACAAAAGTAGGTGTGTGCACATCTGCAC ATAAGACTTTCTGTGTCTTGGCCTTGTATCATTTCAGTATCAGCTGTCAC CTCGTCATGTACCTTCAATTAAGTAGAGCAGCTTTGAACCTTGGATTACT GTGCAGCTGGCATTGCTGACAGCATGTGTGCTTACATATCCATGTGCATC TAATGTTATACGGCACCGCATCCTGCCAGAGTGTATGTCGCGACTGCAGA ACGAAATGGCCAGGCAGTGGCGGGAACTGGCATGCATATGCAGGAGTCGG TAAAGTGCCGTGAGTGGGACTCACCAATAGCGCGCACCCATAGAGCTGTC ACCACATTCTGAATACTGGGGAAGTCAACGAGTGAGTCGCTAAGCAGTGC TGCACAATCTGAGCACTGACACACTGGAGCACCTGCAGTGCGCACAGTGG CTCTTATGCTAGCAACATGCTGACAAGTTGGTCATGATTAGTGACCGACG CTGGGTGTATCGTGCGAGCAGACCTCAATGCTGCCATCAACCACGAGGTC AAGGCTTGCTGTGGCGAGCTCAGGCAGGTGGGAGGCCTGCAGCGAATCGA TTTAGAAGGACCAGGCACAAGTATGCAAATGTCCCGTCCCAAGTAGTGAT TGCGTACAACACCGCAGAAACTGAGCCGTGCTGCTGCAACAACCTACAGC CACACGTCAGAGCGCTGAACAGCCACTACAACTGAGCACTGCCTCAACAA CTTCAACGTATTGCCGCTACTGCCGCAGCGAGGAACTCGGCAAGATGGAG GCGCAGAGCAGGCGCGAGGGCATGCGGCGCCTGACCACGGACGACTTCAC CAGGCTGAGCATCATCGGCCGCGGCGCGTTCGGCGAAGTGCGCCTCGTCC GCAAGAACGACACGGGCGAGGTGAGATCAACTTCAAGTTGAACTATCCCA TTCACCAGGCTGAGCATCATCGGCCGCGGCGCGTTCGGCGAAGTGCGCCT CGACCGCAAAAACGACATGGGTGAGGTGAACACACAACTTCAACTTGAAG TGGTCCCCTGCAGGTGCTTGCGTATGCATGTAGGTATTCGTGTGATAAGC TTGTATGTGGTACTTGACGTGCTCTGACGCGCCAGCACTTGCCCCTGCCC AAAGGTGTACTCGCACGCGCTGTCACATGATACTAGCCACGGATCCCTAT GACGTGCTTGCACTGCAAGGAAAGTCATGTCAGCGCATGCCAGAGCCATC AGATATTTCAATGACAAGCATTCCAGACACTCGTGCCACGTCTCTTTACT TTACGAGCTAATGCTTGACCACGGCTTCCCTCCAGGTCTGGGTGCTGTGG TCCATGATCATTGAAGTTCTTGAAGTACGGTTGTGTGTCTGTACTTCACA AGTGACGCTCACCTTCATTGCTCAACTGCCGTACCCTTTCAGGTTGGAAC ACTCCGGTCCATAATAATAACCATGGTCCACAAGAACTGCCACACTGCAA CACTTGAAGTTGTGTTACTCTACTTCACGAGTGACGCTGACCTCCGTTGC TCAGCCGCCGCACCCTTCGAGACGGGCGCTCAAGCCCATAACCGATGACG CAATGGTCTACACGCGCCATCATATACTTCAAGTACATTCACGTGTGTCT CTACTTCACAAGTGACTCTCACCTTTGTCGCCTCAACCGCCGCCGTCCCT CCAGGTCTGGGCGCTCAAATCGATGACGAAAGAAGCCATGGTCCACAAGA ATCAGGTCGGACACGTGCAGGCGGAGCGCGATGTGCTGGCATCCGCAGAC AACAACTGGATTGTGGGCCTGCAGTTCTCCTTCCAGGACGACATCAATCT GTACATGGCGATGGAGTTCCTGCCGGGCGGCGACCTCATGAGCCTGCTCA TGAAAGAAGACACTTTCCCCGAGGTGCGTGCTGCTGTTTTGTAAGGGTTA GGGGTTAGGGTTAGGGGTGTTAGGAATAGGGTGAGGGGTTACATTTAACC CTGAACCTAACCCTAATCCTGCCGGGCGGCGACCTCATGAGCCTGCTCAT GAAGGAAGACACTTTCCCTGAGTGAGTGCTGCGCGTTTTGTTTCCAAACT TGAAATCATAGCATGCGATGCAGCGGTATTGATGCTCATGAGATTGGTGG GACCGCAAAGAGGTCACCGCGCCTGACTGCTACTCTGGCGCGTCTAGAAG GTCACCTAACCTCTCTTGAAGTTATGTATGTATGCACAGTCATTCTTTCG AACAGCAAGATCGGTCAGGTCAGGGTCACAATTAGAGTGACGGTTTTGGC ATGCTGCATCACAATGGGCACTGTGGGGTGGCCATGGAGATGTGTGACAA CGGACTGAAGTGCTTGCTGAGGGAACCAAAGTGTATTTGTTTTCAAATTG ACTGGCAACTTTGAGCACATCGGCTGTACGTTAAACATGCGTGCTGCCAT TCCTATTTTAGGCAACGACCAGACAGATGAGTTGGACTTGACTGTGCTCA TCCCGCGTGACAGCACATCTGTTCGGTTGTGTCTCTGTGTGATCAGGCGG CAACAAAGCAGTACATGGCAGAGATGATCCAGGCTGTGGCCTGCGTGCAC GCGCTTGGTTACATACACCGCGACCTGAAGCCAGACAACATCCTGCTGGA CTGGCAGGGGCACCTGAAGCTCACCGACCTGGGCCTCTCCAAGAAGGTAC GCGCACACGAAATCATGAATATGCATCCTTCATGAATACTTGTGATGACT GATTGACATGACTGCAGTGGCATGTCAAGCTCACCGACATGGGCCTCTCC AAGAAGGTATGCGCAAACGATTCACTCATGAATATGCATCCATCATGAAC ATGTGTGATGATTCGCTGATGAATGAACATGATTGGCAGAGGGGCACCAC AAGCTTTACCGGCTCGGGTCTCCCTCTCAAGGAAGGTGCGTGATTCACAC ATGACAAGTTTCATCCATGCAAGTGATGTCATGCTTCAAGGCTGGAGCAC CTCAACATGTAACAGCAGGCTCAGATTCCCCTCTTTGCCCCCCCAACACC CCCCTTCCTCCCCCCCCCCCCCCCCGCCCCCCGCTGTCTAGGTCAGAATT GACGCCATCTACTTTGGCGTCATACAAGGGATGTCACACTTGCAGGCTGG GGCGTTTAACAACAGGCTCAGCGCATTCGATGCCCCCCCCTGATTGCCCC CCCTAACCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCTCAGGTCGAGATC GACGCCAGCTACTTTGGCGCGACCCCAGAGGACCTCAACGTCAACGCCGC AGCAGCACGGCTCGACACGCGCCCCCTCCCCGACAGGAAGGCCACGCACG TACGCGGGCAGACCAACCTCCCGCGCGACCGCAAGCTCGCCTACTCCACC GTGGGAACCCCCGACTACATCGCGCCGGAGGTCCTCAGCCAGAAGGGCTA CGGGCCCGAGTGCGACTGGTGGAGCCTGGGGGTGATCATGTACGAGTGCC TCGTGGGGTACACGCCATTCTACGCGGATGACCCCGTGATGACGTGCAGG AAGATCCTGCGCTGGCAGCAGTTCCTCGACGTGCCGGACCACGTCAGCCG CGCGCTCTCACGTGAGTGCACAGTGCTCAACATTTTTTTTGCGCTCAGCC AAGTACTTTCTGCATTGCAACATTATGCGCAGCAGTGCAACGGGCGCTAC GTCAGCCGCGCGCTCTCGCGTGAGTGCAGTCAGATCCACTAGTGTTTTCG GGTGATAGTATGCGCAGCAGTGCAATGGATCACGTCAGCCGCGCGCTGTC ACGTGAGAGTGCGCAGTGCTCAACTTCTCTGTCTTGTGGCAGCAATGAGT TGCAGTTTTGTAGTCATGTGCAGCAGTGAAACGGACCTTGTCAGCTGCGC GCTCCTGCGTGAGCAGTGCTTGATCCCCCTTCAGCAGCGCTCAATCAGAT GCAGCACATCGTAACCCGCAACTGCCGCAACTGCCGCAGTGCACAACGGA CCATATACGCGGTGCGCTCTCTCCATAGTCGCAACGTGTATTCAGCAGGC AGTGCTCGACCTCATATTCAACAACAGCTGTAGCCCTAACCTAACGCTAG CCTTGACCCACTCCTCCACCCAAATCTGGACAAAGGCTGCTGTCTCGCCC ATATGCGCCAGAGTCAACAACCCATGCGCAGAACCCCCCAAAGTTGCCCT ACCATACATACCCCTGCCCACATCCGTACATCACCATCACCCTCGCAGCC TCGACACACCCAACACAAACGTTCATCTCATTCCGCACCCGTGCCCCCCT CGCCTCCACCCCTCTCCGCCCCCCCCCCCCCCCCCCAGCGCAATGCCTCG AGTTCATGATGTCCTTTGTGTGCAACGCGGAGTCGCGCCTCGGCCGCACC TCCATGGACGAAATCCGCAATCACCCCTGGTTCGCGGGGCTCGACTGGAC CTCAGCATCGCTCCGCTCCGCCCCCGCCCCCTACAAGCCCGACGGCGCCG ACTCCATTGCAGCGCTGCTCAGCAGCATCAGGACCCTGGAGCCGTCGGAC GCGCGCATGGCTGCCGCGGTGAATCAGCTCACCGCCAACTTTGATGATTT CGAAGAGGAGGAGACGAGCAGGTGGGGGGGGCAGAAGAAGGTCGGGCGGC GCGACAAGGACAATGATTTCGTTGGGTACACGTATTCGCGGCGCTCCGTG GGGGGGCGCGAGTCGATTTCCACTCTATTCGAGCAGAAGGCTGAGGGGGC CTAG
back to top

Coding sequence (CDS) from alignment at Contig_104:209742..215045-

>mRNA_10197 ID=mRNA_10197|Name=jgi.p|Trimin1|173631|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1521bp|location=Sequence derived from alignment at Contig_104:209742..215045- (Tribonema minus UTEX_B_3156 )
ATGAGCAAAAAGCCTGCAGCGGCACCGGCGTCGCCCCCACAGCCAGCGGC
TGTCAGCAGGCCTAGCGATGCCAATCGAGCAAAAGCGGAGCGGCTGAAAG
AAATGCTTGCCAACAAGTACACGAAGCAGAAGGAGACCACGGAAGAGATG
AGCAGGCGGCGCCAGGAGCTTGAGGAGCAGATGAAGGGCATGAATCTGAA
CGAGGCGCAGAAGAAGAAGTACCGCGAGGAACTCGGCAAGATGGAGGCGC
AGAGCAGGCGCGAGGGCATGCGGCGCCTGACCACGGACGACTTCACCAGG
CTGAGCATCATCGGCCGCGGCGCGTTCGGCGAAGTGCGCCTCGTCCGCAA
GAACGACACGGGCGAGGTCTGGGCGCTCAAATCGATGACGAAAGAAGCCA
TGGTCCACAAGAATCAGGTCGGACACGTGCAGGCGGAGCGCGATGTGCTG
GCATCCGCAGACAACAACTGGATTGTGGGCCTGCAGTTCTCCTTCCAGGA
CGACATCAATCTGTACATGGCGATGGAGTTCCTGCCGGGCGGCGACCTCA
TGAGCCTGCTCATGAAAGAAGACACTTTCCCCGAGGCGGCAACAAAGCAG
TACATGGCAGAGATGATCCAGGCTGTGGCCTGCGTGCACGCGCTTGGTTA
CATACACCGCGACCTGAAGCCAGACAACATCCTGCTGGACTGGCAGGGGC
ACCTGAAGCTCACCGACCTGGGCCTCTCCAAGAAGGTCGAGATCGACGCC
AGCTACTTTGGCGCGACCCCAGAGGACCTCAACGTCAACGCCGCAGCAGC
ACGGCTCGACACGCGCCCCCTCCCCGACAGGAAGGCCACGCACGTACGCG
GGCAGACCAACCTCCCGCGCGACCGCAAGCTCGCCTACTCCACCGTGGGA
ACCCCCGACTACATCGCGCCGGAGGTCCTCAGCCAGAAGGGCTACGGGCC
CGAGTGCGACTGGTGGAGCCTGGGGGTGATCATGTACGAGTGCCTCGTGG
GGTACACGCCATTCTACGCGGATGACCCCGTGATGACGTGCAGGAAGATC
CTGCGCTGGCAGCAGTTCCTCGACGTGCCGGACCACGTCAGCCGCGCGCT
CTCACCGCAATGCCTCGAGTTCATGATGTCCTTTGTGTGCAACGCGGAGT
CGCGCCTCGGCCGCACCTCCATGGACGAAATCCGCAATCACCCCTGGTTC
GCGGGGCTCGACTGGACCTCAGCATCGCTCCGCTCCGCCCCCGCCCCCTA
CAAGCCCGACGGCGCCGACTCCATTGCAGCGCTGCTCAGCAGCATCAGGA
CCCTGGAGCCGTCGGACGCGCGCATGGCTGCCGCGGTGAATCAGCTCACC
GCCAACTTTGATGATTTCGAAGAGGAGGAGACGAGCAGGTGGGGGGGGCA
GAAGAAGGTCGGGCGGCGCGACAAGGACAATGATTTCGTTGGGTACACGT
ATTCGCGGCGCTCCGTGGGGGGGCGCGAGTCGATTTCCACTCTATTCGAG
CAGAAGGCTGAGGGGGCCTAG
back to top