mRNA_10195 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351952
Unique Name	mRNA_10195
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351952 vs. uniprot
Match: A0A836CMT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT5_9STRA)

HSP 1 Score: 529 bits (1363), Expect = 4.050e-188
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 3

Query:   15 MRTTALTLLLTVGLLPALGFSAFWQPRVKGLRATRRQRHHEGYDLRPNSAIQSADPNLCIFNKIALLSGGGAASVDTPMNSKAVKIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKRSEAAATE 803
            MRTTALTLLLTVGLLPALGFSAFWQPRVKGLRATRRQRHHEGYDLRPNSAIQSADPNLCIFNKIALLSGGGAASVDTPMNSKAVKIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKRSEAAATE
Sbjct:    1 MRTTALTLLLTVGLLPALGFSAFWQPRVKGLRATRRQRHHEGYDLRPNSAIQSADPNLCIFNKIALLSGGGAASVDTPMNSKAVKIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKRSEAAATE 263

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BLAST of jgi.p|Trimin1|351952 vs. uniprot
Match: A0A836CIU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU2_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.110e-62
Identity = 107/201 (53.23%), Postives = 140/201 (69.65%), Query Frame = 3

Query:  207 ALLSGGGAASVDTPMNSKAVK--IGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKRSEAAATE 803
            AL   GGAA+ D  + S + +   G AS+WGVLSVLAI  NA +RL P+A++P +  D   LT   W  Y G   L+ Y +G +A ++KFS  VVQRALTLD+  A PLR++LAGPYSMGLF A+R+RK  SW +  A +G+++ ++K+PYPWRSI+D GV+AGL WG GA+ YYWVRSW G +PGVD Q+P   E A TE
Sbjct:   73 ALRMSGGAAADDNTVASTSGRSSFGLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGD---LTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKS-AGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLPLE-EPAKTE 268

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BLAST of jgi.p|Trimin1|351952 vs. uniprot
Match: A0A835ZF77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF77_9STRA)

HSP 1 Score: 202 bits (513), Expect = 8.510e-60
Identity = 105/215 (48.84%), Postives = 143/215 (66.51%), Query Frame = 3

Query:  195 FNKIALLSGGGAA---SVDTPMNSKAVK--IGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEAT--PLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPK-RSEAAATE*MRS 815
            F     LSGGG     SV  P  S   +   G+AS+WGVLSVL+I A A RRL P+A++P +  D   L+   W  Y    AL+ Y++G +A ++KFS  VVQRALTLDQ   +  PLR++LAGPY MGLF A R+RK  SW + ++ + ++ V++++PYPWRSI+DAGV+AGL WG  A+ Y+WVRSW G  PGVD QMP+ + EA A + +R+
Sbjct:   17 FTAALRLSGGGIGRGKSVAPPPPSAPARSSFGFASAWGVLSVLSILAGALRRLVPIALQPFKAGD---LSYGHWALYMSFVALMAYVEGHKAFQKKFSPMVVQRALTLDQARTSFGPLRIILAGPYCMGLFYATRKRKIVSWTLYISVIALVTVVRQLPYPWRSIIDAGVVAGLSWGASAILYFWVRSWFGRAPGVDAQMPESKEEAPAKQPLRA 228

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BLAST of jgi.p|Trimin1|351952 vs. uniprot
Match: A0A8J6CDI7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDI7_DIALT)

HSP 1 Score: 155 bits (393), Expect = 4.650e-42
Identity = 88/195 (45.13%), Postives = 119/195 (61.03%), Query Frame = 3

Query:  204 IALLSGGGAASVDTPMNSKAVKIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQ--GEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKR 782
            +A     GA++V  PM   A     AS WGV+ V+AI ANA  RL P+A EP +    GGL  + W  YA   A   Y++G +A + KFS  VV RA TL    G AT LR +LA  YSMGLF A R+RK  SW + +A + I+ V+K++PYPWRSIVDAGV+AGL WG  ++ + +V++  G  P V  ++P +
Sbjct:   34 VARARARGASTV--PMRPSA-----ASHWGVVGVMAILANAIGRLAPIAAEPFRY---GGLAPLHWASYAATIAAFAYVEGYKAFQLKFSPLVVSRAFTLGPQGGRATALRSVLAPFYSMGLFHATRKRKVISWTISLAVIVIVGVVKRLPYPWRSIVDAGVVAGLTWGVTSIGWIYVKAIGGSLPNVSTELPPK 218

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BLAST of jgi.p|Trimin1|351952 vs. uniprot
Match: A0A7S3SW48_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SW48_EMIHU)

HSP 1 Score: 154 bits (388), Expect = 5.030e-41
Identity = 83/208 (39.90%), Postives = 123/208 (59.13%), Query Frame = 3

Query:  171 SADPNLCIFNKIALLSGGGAASVDTPMNSKAVKIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEATP--LRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKRSE 788
            SA P +    +  L++   +AS   P+ +     G  ++WGV   L I A A  RL P+A++P+   D   +T +QW  Y G  A   Y +G +A + KFS  VVQRA+TL      P  L  +LA  YSMGLF A+++RK  SW + +    II ++K++PYPWRS+VDAGV  GL WGG ++   ++R+ +G +PGVDP++PK  +
Sbjct:   41 SARPAIGRAARADLIAASASAS---PVPTADAARGLRTAWGVCGFLGILAQAIGRLAPIAMQPILQRD---ITMLQWGLYGGTMAFFAYTEGYKAFQCKFSPLVVQRAMTLSTRSPPPPLLHSVLAPFYSMGLFHASKKRKTVSWSISLGVACIIGLVKRLPYPWRSVVDAGVCTGLLWGGTSIGVIYLRALAGKSPGVDPELPKEDK 242

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BLAST of jgi.p|Trimin1|351952 vs. uniprot
Match: A0A0M0JX49_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX49_9EUKA)

HSP 1 Score: 147 bits (372), Expect = 6.340e-39
Identity = 74/185 (40.00%), Postives = 112/185 (60.54%), Query Frame = 3

Query:  231 ASVDTPMNSKAVKIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKRS 785
            AS   P N+  + +    +WGV   L I A+A +RL P+A++P    D   L+ +QW  Y G   +  Y++G  A ++KFS  VV+RA+TL Q   +P+ + LA  YSMGL  A ++RK  SW + ++   ++ ++K++PYPWRSIVDAGV  GL WG  ++   + R+ +G  PGVDP +P  S
Sbjct:   45 ASPAAPRNAHGIAV----AWGVCGFLGILASAIKRLAPIAMQPFLQRD---LSWLQWGFYGGSMGIFAYVEGYGAFQKKFSPLVVERAMTLKQS-TSPVHIALAPFYSMGLMHATKKRKIVSWSVSMSVAMVVGIVKRLPYPWRSIVDAGVCTGLAWGAVSIVIIYARALAGTPPGVDPCLPSSS 221

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BLAST of jgi.p|Trimin1|351952 vs. uniprot
Match: A0A7S2WJT5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJT5_9STRA)

HSP 1 Score: 148 bits (373), Expect = 4.140e-38
Identity = 82/197 (41.62%), Postives = 117/197 (59.39%), Query Frame = 3

Query:  201 KIALLSGGGAASVDTPMNSKAVKIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQ----GEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRS-WSGINPGVDPQMP 776
            K+A +SGGG  S D       +    AS+WG L V+ I AN  +RL PVA++P   +  G L+ + WV YA     +GY +G +A + KF   VV RA TL++    G    LR  LA  YSMGLF A+++R   SW  ++    I+  +K++PYPWRSI+D GV+ GL WG  ++AY ++R  ++G  P VDPQ+P
Sbjct:  104 KMAAISGGGKLSKDEQSPLGFI----ASTWGALGVMYILANPIKRLLPVALQPF--ASPGDLSAMHWVAYALWCVFMGYTEGYKAFQLKFCPLVVSRAATLERQDCRGPGWWLRAALAPLYSMGLFHASKKRLIVSWSFVIGISAIVATVKRLPYPWRSIIDGGVVFGLSWGAASIAYLYLRKIFTGQIPEVDPQLP 294

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BLAST of jgi.p|Trimin1|351952 vs. uniprot
Match: W7TVP9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVP9_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.500e-37
Identity = 78/199 (39.20%), Postives = 125/199 (62.81%), Query Frame = 3

Query:  201 KIALLSGGGAASVDTPMNSKAVKIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMS-DKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEATPL-RVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKRSEA 791
            K+A ++GG A +V+T   S+      ++ WGV+ V+A+ +NA RRL P+A+EP + +      T + W  Y G   ++ Y +G +  + KFS  VV+RALTL  G  +PL   +LA PYSMGLF A+++R+  SW + +  +G++K +K + +P+RSIVDAGV+AGL WG  ++A  + ++  G  P +DP +P   +A
Sbjct:   96 KLAKITGGAAPAVET---SQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTL--GPRSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPDVKKA 289

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BLAST of jgi.p|Trimin1|351952 vs. uniprot
Match: D8LTY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY0_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.910e-36
Identity = 86/246 (34.96%), Postives = 130/246 (52.85%), Query Frame = 3

Query:  108 RATRRQRHHEGYDLRPNSAIQSA----DPNLCIFNKIALLSGGGAASVDTPMNSKAVKIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEAT---------------PLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKRSE 788
            R T+RQ+ ++    RP+++  +A       L +  K   ++GGGA +        A   G AS+WGV+SV+ I  NA +RL P+A++P   +  G                          ++KFS  VV+RALTLDQ  A                PLR+LLAGPYSMGLF A ++RK  SW +    + +++++K++PYPWRSIVDAGV+ GL +G  ++   W R+  G  P +DP +P+  +
Sbjct:   92 RETQRQQKNDDLLQRPHASPVAAAVAPKNTLPLMGKALFVTGGGAGAGAAGKGEPA-GFGVASAWGVVSVVFILMNAVKRLAPIAMQPFSRASLG-------------------------FQKKFSPLVVKRALTLDQAAAAVPAADGGQKRRRRAGPLRLLLAGPYSMGLFHATKKRKTVSWSLTAGVLCLVQMVKRLPYPWRSIVDAGVVVGLSYGTLSICVIWARAILGKAPSIDPALPEEKK 311

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BLAST of jgi.p|Trimin1|351952 vs. uniprot
Match: A0A8J2SZF0_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZF0_9STRA)

HSP 1 Score: 139 bits (351), Expect = 7.290e-36
Identity = 72/169 (42.60%), Postives = 103/169 (60.95%), Query Frame = 3

Query:  270 IGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMP 776
            +G A +WG L + AI  NA RR+ PVA+EP   S    L    W  YA     + Y++G +A  RKFS  VV RALTL   +A    V LA  Y+MGLF A+++R A+SWG +V    ++K++K + YPWR++VD GV+AGL  G  ++ Y++ RS  G++P  D  +P
Sbjct:   54 LGIAPAWGALGMTAILGNAIRRVLPVALEPFS-SGAAALAPPTWAAYAAFVVFMTYVEGYKAFHRKFSPMVVARALTLR--DAPLHHVALAPLYAMGLFHASKKRLATSWGFVVGIAALVKLVKTLDYPWRAVVDGGVVAGLSVGAASILYHYGRSLGGVDPPADAALP 219

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351952 vs. uniprot

BLAST of jgi.p|Trimin1|351952 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CMT5_9STRA	4.050e-188	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CIU2_9STRA	2.110e-62	53.23	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZF77_9STRA	8.510e-60	48.84	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A8J6CDI7_DIALT	4.650e-42	45.13	Uncharacterized protein n=2 Tax=Diacronema lutheri...	[more]
A0A7S3SW48_EMIHU	5.030e-41	39.90	Hypothetical protein n=2 Tax=Emiliania huxleyi Tax...	[more]
A0A0M0JX49_9EUKA	6.340e-39	40.00	Uncharacterized protein n=1 Tax=Chrysochromulina t...	[more]
A0A7S2WJT5_9STRA	4.140e-38	41.62	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
W7TVP9_9STRA	1.500e-37	39.20	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]
D8LTY0_ECTSI	1.910e-36	34.96	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A8J2SZF0_9STRA	7.290e-36	42.60	Hypothetical protein n=2 Tax=Pelagomonas calceolat...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_104	contig	Contig_104:201291..205610 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351952\|estExt_Genemark1.C_Ctg_1040034
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2BRVF@1\|root,2S1X8@2759\|Eukaryota
Evalue	2.02e-43
Seed ortholog	2903.EOD04443
Hectar predicted targeting category	signal peptide
TranscriptId	352274
Track	FilteredModels1
ProteinId	351952

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351952	gene_10195	Tribonema minus UTEX_B_3156	gene	Contig_104 201291..205610 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351952	Trimin1\|351952\|estExt_Genemark1.C_Ctg_1040034	Tribonema minus UTEX_B_3156	polypeptide	Contig_104 201305..205285 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_10195_1	exon_10195_1	Tribonema minus UTEX_B_3156	exon	Contig_104 201291..201461 +
exon_10195_2	exon_10195_2	Tribonema minus UTEX_B_3156	exon	Contig_104 201667..201869 +
exon_10195_3	exon_10195_3	Tribonema minus UTEX_B_3156	exon	Contig_104 202333..202390 +
exon_10195_4	exon_10195_4	Tribonema minus UTEX_B_3156	exon	Contig_104 202827..202903 +
exon_10195_5	exon_10195_5	Tribonema minus UTEX_B_3156	exon	Contig_104 203494..203616 +
exon_10195_6	exon_10195_6	Tribonema minus UTEX_B_3156	exon	Contig_104 204588..204743 +
exon_10195_7	exon_10195_7	Tribonema minus UTEX_B_3156	exon	Contig_104 205268..205610 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_10195	UTR5_10195	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_104 201291..201304 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_10195	CDS_10195	Tribonema minus UTEX_B_3156	CDS	Contig_104 201305..201461 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_10195	UTR3_10195	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_104 205286..205610 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_104:201291..205610+
coding sequence from alignment at Contig_104:201291..205610+

spliced messenger RNA

>mRNA_10195 ID=mRNA_10195|Name=jgi.p|Trimin1|351952|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1131bp|location=Sequence derived from alignment at Contig_104:201291..205610+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGGGCGAATCGCAATGCGGACGACCGCGCTGACACTGCTGCTGACCGTC
GGCCTGCTTCCAGCTCTTGGATTCTCCGCATTCTGGCAGCCACGCGTCAA
AGGTCTGCGTGCAACTCGACGTCAGCGGCATCACGAAGGATACGATCTTC
GACCTAACTCCGCGATCCAATCCGCGGATCCTAATTTATGCATCTTCAAT
AAGATAGCATTGCTATCAGGAGGCGGTGCAGCATCTGTGGACACGCCAAT
GAACAGCAAAGCCGTCAAGATAGGCTGGGCCAGCTCCTGGGGAGTTCTGT
CCGTGCTGGCCATATTTGCAAATGCCGCACGACGGCTGGGCCCTGTGGCG
ATTGAGCCACTGCAGATGAGTGATAAAGGTGGCCTGACAACGGTGCAGTG
GGTCTGCTATGCGGGGTGCACTGCTCTTATTGGCTACATGAAGGGCGAGC
GCGCCATCCGCCGCAAGTTCAGCCGACACGTGGTGCAGAGGGCGCTCACT
CTCGACCAGGGCGAAGCTACGCCATTGCGCGTGCTACTGGCGGGCCCCTA
CAGCATGGGGCTGTTCCGTGCCAACCGCAGGCGCAAGGCCTCCAGCTGGG
GAATGCTGGTGGCAGCAGTGGGCATCATCAAGGTCATCAAGAAAATGCCA
TATCCGTGGCGCAGCATAGTGGATGCGGGTGTGCTGGCAGGCCTGTGCTG
GGGCGGCGGAGCCGTGGCGTACTACTGGGTTCGGTCCTGGTCTGGCATAA
ACCCAGGAGTTGACCCGCAGATGCCCAAACGCAGCGAGGCTGCCGCCACA
GAGTGAATGCGCAGCACCGCCACCTGGCCTTGGCCACTATCGCGTCCATG
TGCGGACAGTGGCGGCTGCCTTTGCAGCAGCGCTCCATCATTGTCATCAG
TGTTTTGTTACATGCGTCAAGAACCACAGGCAGCAGTAAGCTTAGTGTAG
TGTCAGAGTACATGTGTGTCATTCACATAGGTGCCAGAGCAAGAGCCCAC
AACATCGGCACCAAATGCACCAAGTGGTGACGATCAGCTCTTGAAGTGCG
CGCTGCTTCTTGAAGTAGTTGATTGGGCGAGTGTGTTCTGACAAGTGCTT
CCACGGGCGGCCAATAAAGATTTCAGTTTGC

protein sequence of jgi.p|Trimin1|351952

>Trimin1|351952|estExt_Genemark1.C_Ctg_1040034 ID=Trimin1|351952|estExt_Genemark1.C_Ctg_1040034|Name=jgi.p|Trimin1|351952|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=264bp
MRTTALTLLLTVGLLPALGFSAFWQPRVKGLRATRRQRHHEGYDLRPNSA
IQSADPNLCIFNKIALLSGGGAASVDTPMNSKAVKIGWASSWGVLSVLAI
FANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRR
KFSRHVVQRALTLDQGEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVA
AVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVD
PQMPKRSEAAATE*

mRNA from alignment at Contig_104:201291..205610+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10195 ID=mRNA_10195|Name=jgi.p|Trimin1|351952|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4320bp|location=Sequence derived from alignment at Contig_104:201291..205610+ (Tribonema minus UTEX_B_3156 )
AGGGGCGAATCGCAATGCGGACGACCGCGCTGACACTGCTGCTGACCGTC
GGCCTGCTTCCAGCTCTTGGATTCTCCGCATTCTGGCAGCCACGCGTCAA
AGGTCTGCGTGCAACTCGACGTCAGCGGCATCACGAAGGATACGATCTTC
GACCTAACTCCGCGATCCAATGTAAGCGGTATCTGCCCACTCCTGCGACC
CCCTGACTGTCTTATGAATGTTTTTCGCGCATGCCTTACATGATTCGTTG
CGGTGGAACATGCTGATACGGCTGGATCGGATGCATGTGCTGGTGTGTGT
ACATTCATAAAACTTGGAGATTTTTTTGCTGAACCCGCGCTTCTGCTTTT
GATGCACCATTGCGAGGTCACAGCAGCCGCGGATCCTAATTTATGCATCT
TCAATAAGATAGCATTGCTATCAGGAGGCGGTGCAGCATCTGTGGACACG
CCAATGAACAGCAAAGCCGTCAAGATAGGCTGGGCCAGCTCCTGGGGAGT
TCTGTCCGTGCTGGCCATATTTGCAAATGCCGCACGACGGCTGGGCCCTG
TGGCGATTGAGCCACTGCAGATGAGTGATGTGAGTTTGCAAGGCTTAATA
ATCGTCTGTCAGACATATCAGCACAAGTCTCAGTGCCTGCGCTTGTGCGA
GCTGCAACTCCTCATGAAGTGAATGACTTCACCGCCCCTACTTGTTTGCA
GCGAGGTATTACATCAACATGCTAGTTCTAAGAACCTCCAAGGCTCATTG
CGCAGGACTTGGGCATCTAGAGCAGACCCCGAGCATTACGAACATGGCCT
TACGCTGTATTAAAGGGTACAGGCATCCCATTACACCATTATGCCAATAT
GCAATCGGCTTGACCAGTTCAGTGAGGTGCCACTGTAACGCCCGGGCTGC
CTTGCAAAGCCATGAAAATCTTGAAGTTTACAAACAAACAACGCATTTGA
GCCGGTGTATTCGTCACACTCCGTAGCTTCGCTGTACCAGCGTTCCTGAT
CTGTCCTGTGTGCTGCTCGCATCATTTCTTGTTGCCACGCAGAAAGGTGG
CCTGACAACGGTGCAGTGGGTCTGCTATGCGGGGTGCACTGCTCTTATTG
GTAAGTTCTGGCAATATACTATCCCGTGGTTGAAGTCATGGTTGCAGCGT
CAAGCGCAAGAATATGGTTTAGCGCATAAAACACACTTCAGGTTGCAGCG
TTTTGTTCTTGACGGCAGTACTGTGAAAGGTCGTGATCACACTTATGAGT
GTCCTGGCTGCACAAAATCAGGTTAAGTGTAAGAAAAAGGGTTAAATCAA
CATCAAGCGACGGCTGCCGGCGGCTCGCATTGCCTGCCTGCTGATGCGCA
CTTGCTGCTCGTGCATGCATGCGTATTCCTGCAGGTTTCTTGTGAGGGGA
CCGCCTTTACCGGCAGTGGACATCGATGATCACTGACATGATCACAACAT
GATCACACTCATGATGACATGCATGATCACATTCGTGAATTTGCGTGCTG
TGACTCCACCTGGTTGCTGCGTACCTGCGCTGGCAGGCTACATGAAGGGC
GAGCGCGCCATCCGCCGCAAGTTCAGCCGACACGTGGTGCAGAGGGCGCT
CACTCTCGACCAGGTGCGTATGGCATGTAAAATTTCCTCAAACTTCATGA
CTTGAAGTTGATGCATCCTTCTCTTTGGCTGGCACTTCAAGTGGCGGTGT
TGGTCTAGACGTGATGCTATACTGTGATGAGCCGAAGCGGACACAGTACA
TCTCAATGAGAAGAGCACTGACAGTGATGGTGGCTACCAGCGTGATCCGA
GCATTCATGGGTGACAAGCCCGGGCCGGCGGGCCCGACCTGTGGTATTTG
GTCTGTGCTGGCGCTTCGGTCCTGATGAAGTACCTCAGCCTTGGTCAACC
CCATGCGTTTTTTACAAGATGTATCAATTGTCAAGTGTAGCACGCAACAG
CTTGAAACATGCAAAAAAGTACTCTGATATCTTTTGCTGACACATGGGGG
GGGGGGTCACGATATAAGAGCAGGTCGTTTCCGCCAGCCTCACCGCTCTT
ATACTCTGATTGCTCCTACATTATCCTTGGGCTTGAGTAGGGTCAGCGCA
AACCTTAGGCTAACCGTAACCTTGGCTATAGGGCCAGAGAAAAACATTAT
GATGTCTGTTTCCAATACTGTTTGAAACTGTTTGTGCTGTTTTCTGCAAC
CAGGGCGAAGCTACGCCATTGCGCGTGCTACTGGCGGGCCCCTACAGCAT
GGGGCTGTTCCGTGCCAACCGCAGGCGCAAGGCCTCCAGCTGGGGAATGC
TGGTGGCAGCAGTGGGCATCATCAAGGTATGTATGTATACACGTTGTTCA
CTTGTGCCTACGTAGGGCGCGAAAAGCTGTAATGAGCTTGAAAAGAGCAA
CAACAAGCTTGTCAGCAGTGGGCATCATCAAGGTGTTCATCTTGTTCACT
TTTGCTTACGTAGGGTGCGAAAAGTAAAAAGGCGTGTGAATTGAGCAACA
TACTGAAGGTTTTTTTAGCAGAAGTCTCCAAAATGAATGTTTTTATACTT
CAATAAGCCAGCTTGCCAGCAGCGCCGATACCTTGACACGAAATGCATAA
ATGCTTGTTGAATGACATCTAGAATCATAAGCTAACCGGCATTGCCAAAG
GGGAAGTGTTTTTTGATATGGCATTCTTGCAACTGTTAAAGCTTGGGCTA
TGGCCTGTGGGTTTGTTTCTGTGTGAGCCTGTAGTACATCAGCAGTTTGA
CATGCTGGCAGAGACAGTTAACGGCAATGCTGTATCTGCAACAACCATGC
TTGTTTGCGCTTTTGAGTACAATACACTTTTGCCACATGGCGCTTGAGTG
CATGCACCCAAAACGTAGTAGGTGGCAGCAAGGGAAAGCTCTCTTGTCTT
TGTCTTTTGGGAGTTTGATCGAATGTAGGCAATGCTTCCATTTTTCCATC
AGTGTTGGCAGCTTGAAGCGCCTGCAGCCTTGAGTGGTCTGTACAGCAGT
GGTCTTGCCAAGTATGGCGTGTCAGATCTGTACTAAAGCACCATTCATCA
GAGTAGCATGTTGATACTTCAACTGTATTGTTTGGCGTGAAGCGGCATCC
AGTTCTTTGTGTTCAATGCTCAGACCTGTACTGTATCGTGCAGGCCTGCT
GTACACGATGTGCTCCACACGCTCCACAACGCTCAGCGCCGCCGTACTCG
ATGACACTTCAACTTCAAGTTGTGACACTGACGCACCGCTGCGTACCCCC
CAATGCGTGCCCCTTGCTGCATTGCGCGCGCGTACTGTCACGCACAGGTC
ATCAAGAAAATGCCATATCCGTGGCGCAGCATAGTGGATGCGGGTGTGCT
GGCAGGCCTGTGCTGGGGCGGCGGAGCCGTGGCGTACTACTGGGTTCGGT
CCTGGTCTGGCATAAACCCAGGAGTTGACCCGCAGATGCCCAAACGCAGC
GAGGTCAGACCTGATCCTCACTGTAATGCTAACCCGCGATCGTTCACATG
TGCCTAACCCTAACCCTGATTGTAACAACAACCCTCATCGTCCACATGTG
CGGTAGTGTAGCTTGCTGCCAAACGCAGCGAGGTCAGTCCTAACCCTAAC
ACCAATGCTCTCCGCAACCCTACATCTCAGCCTCACCCTGGCATGATGTT
GTGCCAGGCCATACTATGAACATGGCATCTGCATGTTAGAGCGTATTGTG
GTCGAACAACGGCGATGTGAAAGGCAGGTTGCGGCGGGCGCTGCGTTGAC
TACTTCAGAAGCCTGAAGATGTGGATATGTGAAAAGATCAGACAGAGGCA
GAAGCTGACAAAAGCAGATCACGCTTGTAGTGGGCGCATGAGTTGACATG
AAGGAGCTCAGTGGCCACTATGCTTTTGTTCTGCAAGCAGTGACAACACA
TTGTTGTTTGCGTACTTTTGTGAAGGTGTTGCTCACTTTTTTGAGCACTT
GGCTGTGTGTTTTCTCATCCTCCACAGGCTGCCGCCACAGAGTGAATGCG
CAGCACCGCCACCTGGCCTTGGCCACTATCGCGTCCATGTGCGGACAGTG
GCGGCTGCCTTTGCAGCAGCGCTCCATCATTGTCATCAGTGTTTTGTTAC
ATGCGTCAAGAACCACAGGCAGCAGTAAGCTTAGTGTAGTGTCAGAGTAC
ATGTGTGTCATTCACATAGGTGCCAGAGCAAGAGCCCACAACATCGGCAC
CAAATGCACCAAGTGGTGACGATCAGCTCTTGAAGTGCGCGCTGCTTCTT
GAAGTAGTTGATTGGGCGAGTGTGTTCTGACAAGTGCTTCCACGGGCGGC
CAATAAAGATTTCAGTTTGC

Coding sequence (CDS) from alignment at Contig_104:201291..205610+

>mRNA_10195 ID=mRNA_10195|Name=jgi.p|Trimin1|351952|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=792bp|location=Sequence derived from alignment at Contig_104:201291..205610+ (Tribonema minus UTEX_B_3156 )
ATGCGGACGACCGCGCTGACACTGCTGCTGACCGTCGGCCTGCTTCCAGC
TCTTGGATTCTCCGCATTCTGGCAGCCACGCGTCAAAGGTCTGCGTGCAA
CTCGACGTCAGCGGCATCACGAAGGATACGATCTTCGACCTAACTCCGCG
ATCCAATCCGCGGATCCTAATTTATGCATCTTCAATAAGATAGCATTGCT
ATCAGGAGGCGGTGCAGCATCTGTGGACACGCCAATGAACAGCAAAGCCG
TCAAGATAGGCTGGGCCAGCTCCTGGGGAGTTCTGTCCGTGCTGGCCATA
TTTGCAAATGCCGCACGACGGCTGGGCCCTGTGGCGATTGAGCCACTGCA
GATGAGTGATAAAGGTGGCCTGACAACGGTGCAGTGGGTCTGCTATGCGG
GGTGCACTGCTCTTATTGGCTACATGAAGGGCGAGCGCGCCATCCGCCGC
AAGTTCAGCCGACACGTGGTGCAGAGGGCGCTCACTCTCGACCAGGGCGA
AGCTACGCCATTGCGCGTGCTACTGGCGGGCCCCTACAGCATGGGGCTGT
TCCGTGCCAACCGCAGGCGCAAGGCCTCCAGCTGGGGAATGCTGGTGGCA
GCAGTGGGCATCATCAAGGTCATCAAGAAAATGCCATATCCGTGGCGCAG
CATAGTGGATGCGGGTGTGCTGGCAGGCCTGTGCTGGGGCGGCGGAGCCG
TGGCGTACTACTGGGTTCGGTCCTGGTCTGGCATAAACCCAGGAGTTGAC
CCGCAGATGCCCAAACGCAGCGAGGCTGCCGCCACAGAGTGA